View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0587_low_10 (Length: 418)

Name: NF0587_low_10
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0587_low_10
NF0587_low_10
[»] chr3 (2 HSPs)
chr3 (74-320)||(25601802-25602048)
chr3 (74-268)||(25597049-25597252)
[»] chr4 (6 HSPs)
chr4 (128-268)||(36636745-36636885)
chr4 (128-268)||(36643440-36643580)
chr4 (138-241)||(36613165-36613268)
chr4 (183-268)||(36668463-36668548)
chr4 (160-268)||(35968458-35968566)
chr4 (128-195)||(36909764-36909831)
[»] chr5 (2 HSPs)
chr5 (138-267)||(19658151-19658280)
chr5 (138-267)||(19674990-19675119)
[»] chr1 (1 HSPs)
chr1 (176-268)||(42602730-42602822)
[»] chr6 (2 HSPs)
chr6 (230-268)||(33840185-33840223)
chr6 (206-268)||(33844153-33844215)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 74 - 320
Target Start/End: Complemental strand, 25602048 - 25601802
Alignment:
Q  74 gtgagatgaagaaacacattggagaatgagatcattatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaa 173  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25602048 gtgacatgaagaaacacattggagaatgagatcactatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaa 25601949  T
Q  174 atctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagatga 273  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25601948 atctttttgaggagtcgaggctggatgttaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagacga 25601849  T
Q  274 atgccgcaaaactctttatagtgggaaattcagaggaatgcaatata 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25601848 atgccgcaaaactctttatagtgggaaattcagaggaatgcaatata 25601802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 74 - 268
Target Start/End: Complemental strand, 25597252 - 25597049
Alignment:
Q  74 gtgagatgaagaaacacattggagaatgagatcattatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaa 173  Q
    |||| ||||||||||||| || ||||||||| || |||||||||||||| ||| |||||||||  | || |||||||||||||| |||||||| | |||     
T  25597252 gtgacatgaagaaacacaatgaagaatgagaccactatcacccctaacagagattcctaattcccgaaggtgggaattatgagaagaaacatagtctaat 25597153  T
Q  174 atctttttgaggagtcgaggctggatattaccatc---------acagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatct 264  Q
    |||||||||||||||  || | |||||||||||||         || ||||||||||||||||| || ||||| || ||||||||||||||| |||||||    
T  25597152 atctttttgaggagttcagacgggatattaccatcatagggtgtacggtcaagatcaagagcatgcagtgaagttgtgctatcacgaagagttaaaatct 25597053  T
Q  265 taga 268  Q
    ||||    
T  25597052 taga 25597049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 128 - 268
Target Start/End: Original strand, 36636745 - 36636885
Alignment:
Q  128 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagca 227  Q
    |||||| || ||||| |||| |||||| ||||||||||| |||||||||||||| |||||| ||||||  || ||||||| || |||||||||||||||     
T  36636745 tcctaaatcctggaggtgggtattatgggaggaaacatagtttaaaatctttttaaggagttgaggctcaatgttaccatgacggtcaagatcaagagcg 36636844  T
Q  228 ttcaatgaagctgagctatcacgaagagtcaaaatcttaga 268  Q
    | || || || |||| |||||||||||||||| || |||||    
T  36636845 tgcagtgcagttgaggtatcacgaagagtcaatatgttaga 36636885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 268
Target Start/End: Original strand, 36643440 - 36643580
Alignment:
Q  128 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagca 227  Q
    ||||||||||||||| |||| |||||| ||| ||| ||| |||||||||||||| |||||| |||| |  |||| ||||  ||  |||||||  |||||     
T  36643440 tcctaattcgtggaggtgggtattatgggagcaaatataatttaaaatctttttaaggagttgaggttcaatatcaccacgacgatcaagattgagagct 36643539  T
Q  228 ttcaatgaagctgagctatcacgaagagtcaaaatcttaga 268  Q
    | ||  |||| ||||||||  |||||||||||||| |||||    
T  36643540 tgcagagaagttgagctattgcgaagagtcaaaatgttaga 36643580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 36613165 - 36613268
Alignment:
Q  138 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 237  Q
    ||||| |||| |||||  ||||||||||| || ||||||||||| |||| ||||||||  ||||||||   |||||||| |||||| |||| ||||| ||    
T  36613165 tggaggtgggtattatctgaggaaacataattcaaaatctttttaaggattcgaggctcaatattacctctacagtcaaaatcaagggcatccaatgcag 36613264  T
Q  238 ctga 241  Q
    ||||    
T  36613265 ctga 36613268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 36668463 - 36668548
Alignment:
Q  183 aggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttaga 268  Q
    ||||||||||| |  | |||||||| || ||||| ||||||| |   ||||| || ||||||||||||||||||||||||||||||    
T  36668463 aggagtcgaggttcaaaattaccattacggtcaacatcaagaacgcgcaatgcagttgagctatcacgaagagtcaaaatcttaga 36668548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 268
Target Start/End: Complemental strand, 35968566 - 35968458
Alignment:
Q  160 aaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaa 259  Q
    ||||||| | ||||| |||||  |||||| ||| ||  |||||||||| || ||||| ||||||||| | || || |  |||| ||||||||||||||||    
T  35968566 aaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaa 35968467  T
Q  260 aatcttaga 268  Q
    |||||||||    
T  35968466 aatcttaga 35968458  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 36909831 - 36909764
Alignment:
Q  128 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggct 195  Q
    ||||||||| ||||| |||| |||||| || | |||||| |||||||||||||| |||||| ||||||    
T  36909831 tcctaattcatggaggtgggtattatgggaagtaacatagtttaaaatctttttaaggagttgaggct 36909764  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 19658151 - 19658280
Alignment:
Q  138 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 237  Q
    ||||| |||| |||||| ||| ||||||| | |||||||||||| |||| ||||||||  |||| ||||| || |||||||||||| || | |||||||     
T  19658151 tggaggtgggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaa 19658250  T
Q  238 ctgagctatcacgaagagtcaaaatcttag 267  Q
     |||| ||||||||||||||||||||||||    
T  19658251 ttgaggtatcacgaagagtcaaaatcttag 19658280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 19674990 - 19675119
Alignment:
Q  138 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 237  Q
    ||||| |||| |||||| ||| ||||||| | |||||||||||| |||| ||||||||  |||| ||||| || |||||||||||| || | |||||||     
T  19674990 tggaggtgggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaa 19675089  T
Q  238 ctgagctatcacgaagagtcaaaatcttag 267  Q
     |||| ||||||||||||||||||||||||    
T  19675090 ttgaggtatcacgaagagtcaaaatcttag 19675119  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 42602730 - 42602822
Alignment:
Q  176 ctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttaga 268  Q
    |||||| |||||| | ||||  ||| |||||| || || |||||||||||||| || || || |||| |||||||||||||||||||||||||    
T  42602730 ctttttaaggagttgcggctcaatactaccatgacggtgaagatcaagagcatgcagtgcagttgaggtatcacgaagagtcaaaatcttaga 42602822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 33840185 - 33840223
Alignment:
Q  230 caatgaagctgagctatcacgaagagtcaaaatcttaga 268  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  33840185 caatgcagctgagttatcacgaagagtcaaaatcttaga 33840223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 33844153 - 33844215
Alignment:
Q  206 atcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttaga 268  Q
    |||||| |||| |||||||  || || || ||||||| |||||||||||||||||||||||||    
T  33844153 atcacactcaaaatcaagaatatgcagtgcagctgagttatcacgaagagtcaaaatcttaga 33844215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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