View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0587_low_11 (Length: 405)

Name: NF0587_low_11
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0587_low_11
NF0587_low_11
[»] chr7 (1 HSPs)
chr7 (11-377)||(21397366-21397732)
[»] chr1 (1 HSPs)
chr1 (91-227)||(17909676-17909812)


Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 21397732 - 21397366
Alignment:
Q  11 caaaggcaatatgaacattggcaccacgaccatctatggtcttaaaactgttcatgatcaattcttgcttcagggtgatcaccatgtctctcttgaacac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21397732 caaaggcaatatgaacattggcaccacgaccatctatggtcttaaaactgttcatgatcaattcttgcttcagggtgatcaccatgtctctcttgaacac 21397633  T
Q  111 aatccacaatggcctatcttgaatgacggcgtgacggagagtgccaggtcttgggttcacagggtcgtcatctcttgggttattcacaacgtagtacctt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21397632 aatccacaatggcctatcttgaatgacggcgtgacggagagtgccaggtcttgggttcacagggtcgtcatctcttgggttattcacaacgtagtacctt 21397533  T
Q  211 ccgtcgcggccaccaatagcattgcgaccaaagccaatggcacaatcagccaaccgctttcggcggcggtaccaaagcttgtcacagcgccagcagtcat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21397532 ccgtcgcggccaccaatagcattgcgaccaaagccaatggcacaatcagccaaccgctttcggcggcggtaccaaagcttgtcacagcgccagcagtcat 21397433  T
Q  311 ccattggatttccagtcccacatgagaaaaaactcagactccttctctccgtgtgattgcgtatagt 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21397432 ccattggatttccagtcccacatgagaaaaaactcagactccttctctccgtgtgattgcgtatagt 21397366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 17909812 - 17909676
Alignment:
Q  91 accatgtctctcttgaacacaatccacaatggcctatcttgaatgacggcgtgacggagagtgccaggtcttgggttcacagggtcgtcatctcttgggt 190  Q
    |||||||||||||||||||||||||| | ||| |||||||| || |||||||| || | ||| || || || ||||| |||||||| |||||||||||||    
T  17909812 accatgtctctcttgaacacaatccaaagtggtctatcttggataacggcgtggcgcaaagttcctggcctagggttaacagggtcatcatctcttgggt 17909713  T
Q  191 tattcacaacgtagtaccttccgtcgcggccaccaat 227  Q
     | | ||||| |||||| |||| ||||| ||||||||    
T  17909712 cagtgacaacatagtactttccatcgcgaccaccaat 17909676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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