View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0587_low_12 (Length: 382)

Name: NF0587_low_12
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0587_low_12
NF0587_low_12
[»] chr3 (3 HSPs)
chr3 (142-287)||(15259681-15259826)
chr3 (145-284)||(33590882-33591020)
chr3 (7-75)||(15259546-15259614)
[»] chr7 (6 HSPs)
chr7 (142-287)||(13937635-13937780)
chr7 (142-287)||(39286666-39286811)
chr7 (142-286)||(9987461-9987604)
chr7 (7-75)||(39286878-39286946)
chr7 (7-73)||(13937850-13937916)
chr7 (145-287)||(17218303-17218444)
[»] chr2 (2 HSPs)
chr2 (153-287)||(31140366-31140500)
chr2 (7-75)||(31140588-31140656)
[»] scaffold0094 (1 HSPs)
scaffold0094 (142-287)||(6844-6988)
[»] chr5 (2 HSPs)
chr5 (142-287)||(21724317-21724461)
chr5 (142-287)||(21804053-21804197)
[»] chr8 (2 HSPs)
chr8 (142-287)||(14330845-14330989)
chr8 (176-286)||(24251537-24251645)
[»] chr4 (3 HSPs)
chr4 (146-290)||(30231037-30231180)
chr4 (197-279)||(18748671-18748751)
chr4 (176-220)||(18748626-18748670)
[»] chr1 (1 HSPs)
chr1 (146-290)||(23246698-23246840)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 142 - 287
Target Start/End: Original strand, 15259681 - 15259826
Alignment:
Q  142 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  15259681 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagaacactaaaaaccctaataagtaaaacaaaataaacacaagaaattgaaccaaaaat 15259780  T
Q  242 caggtacaagtttatgggaacatggttgatttgttgaagagaacac 287  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  15259781 caagtacaagtttatgggaacatggttgatttgttgaagagaacac 15259826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 33591020 - 33590882
Alignment:
Q  145 atttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcag 244  Q
    ||||||||| |||| ||||||||||||| | |||||||||||||| ||||| | ||| |||||||| ||||||||  | | ||||||||| || ||||||    
T  33591020 atttcaacagcaaacgtgaatccaggtctaggtagttaagcacaccaaaaaccttaataagtaaaataaaataaatccta-aaattgaactaagaatcag 33590922  T
Q  245 gtacaagtttatgggaacatggttgatttgttgaagagaa 284  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  33590921 gtacaagtttatggaaacatggttgatttgttgaagagaa 33590882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 15259546 - 15259614
Alignment:
Q  7 aatagaaaccaaaggaacacccacctaagcaaaacagcacctaaaaacaatgctaagggaataaaaatc 75  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  15259546 aatataaaccaaagcaacacccacctaagcaaaacagcacctaaaaacaatactaagggagtaaaaatc 15259614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 7e-65; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 13937780 - 13937635
Alignment:
Q  142 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||    
T  13937780 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagaacactaaaaaccctaataagtaaaacaaaataaatacaagaaattgaaccaaaaat 13937681  T
Q  242 caggtacaagtttatgggaacatggttgatttgttgaagagaacac 287  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  13937680 caagtacaagtttatgggaacatggttgatttgttgaagagaacac 13937635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 39286811 - 39286666
Alignment:
Q  142 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||    
T  39286811 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagaacactaaaaaccctaataagtaaaacaaaataaaaacaagaaattgaaccaaaaat 39286712  T
Q  242 caggtacaagtttatgggaacatggttgatttgttgaagagaacac 287  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  39286711 caagtacaagtttatgggaacatggttgatttgttgaagagaacac 39286666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 142 - 286
Target Start/End: Complemental strand, 9987604 - 9987461
Alignment:
Q  142 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 241  Q
    |||||||||||| ||||  |||||| ||||| | |||||||||||||||||||| ||||| || ||||||||||||||| |  |||||||||| || |||    
T  9987604 tatatttcaacatcaaacatgaatctaggtctaggtagttaagcacactaaaaaccctaataaataaaacaaaataaaccct-gaaattgaacaaagaat 9987506  T
Q  242 caggtacaagtttatgggaacatggttgatttgttgaagagaaca 286  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||    
T  9987505 caggcacaagtttatgggaacatggttgatttgttgaaaagaaca 9987461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 39286946 - 39286878
Alignment:
Q  7 aatagaaaccaaaggaacacccacctaagcaaaacagcacctaaaaacaatgctaagggaataaaaatc 75  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  39286946 aatataaaccaaagcaacacccacctaagcaaaacatcacctaaaaacaatactaagggaataaaaatc 39286878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 13937916 - 13937850
Alignment:
Q  7 aatagaaaccaaaggaacacccacctaagcaaaacagcacctaaaaacaatgctaagggaataaaaa 73  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  13937916 aatataaaccaaagcaacacccacctaagcaaaacatcacctaaaaacaatactaagggaataaaaa 13937850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 287
Target Start/End: Original strand, 17218303 - 17218444
Alignment:
Q  145 atttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcag 244  Q
    ||||||||| ||||  |||||||||||| |  | || |||||| ||||||  ||||| |||||||||||||||||| | | |||   |||||| |||||     
T  17218303 atttcaacagcaaacatgaatccaggtctagatggtaaagcactctaaaatccctaataagtaaaacaaaataaacccta-aaacaaaaccaagaatcaa 17218401  T
Q  245 gtacaagtttatgggaacatggttgatttgttgaagagaacac 287  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  17218402 gtacaagtttatgggaacatggttgattttttgaagataacac 17218444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 153 - 287
Target Start/End: Complemental strand, 31140500 - 31140366
Alignment:
Q  153 aacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcaggtacaagt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31140500 aacaaaggtgaatccaggtccatgtagttaagcacactaaaaaccctattaagtaaaacaaaataaacacaagaaattgaaccaaaaatcaggtacaaat 31140401  T
Q  253 ttatgggaacatggttgatttgttgaagagaacac 287  Q
    |||||||||||||||||||||||||||||||||||    
T  31140400 ttatgggaacatggttgatttgttgaagagaacac 31140366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 31140656 - 31140588
Alignment:
Q  7 aatagaaaccaaaggaacacccacctaagcaaaacagcacctaaaaacaatgctaagggaataaaaatc 75  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31140656 aatataaaccaaagcaacacccacctaagcaaaacagcacctaaaaacaatactaagggaataaaaatc 31140588  T

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Target: scaffold0094 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 6988 - 6844
Alignment:
Q  142 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 241  Q
    ||||||||||||| |||  |||||||||||| | || || ||| || ||||||| ||||| |||||||||||||||||| | | |||||||||||| |||    
T  6988 tatatttcaacaataaacatgaatccaggtctaggtggtaaaggacgctaaaaaccctaataagtaaaacaaaataaacccta-aaattgaaccaagaat 6890  T
Q  242 caggtacaagtttatgggaacatggttgatttgttgaagagaacac 287  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  6889 caggtacaagtttatgggaacatggttgatttattgaagagaacac 6844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 21724461 - 21724317
Alignment:
Q  142 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 241  Q
    |||||||||||| ||||  |||||||||||| | |||||||||||||||||||| ||||| || ||||||||||||||| |  |||||||||| || |||    
T  21724461 tatatttcaacatcaaacatgaatccaggtctaggtagttaagcacactaaaaaccctaataaataaaacaaaataaac-cctgaaattgaacaaagaat 21724363  T
Q  242 caggtacaagtttatgggaacatggttgatttgttgaagagaacac 287  Q
    |||| ||||||||||||| ||||||||||||||||||  |||||||    
T  21724362 caggcacaagtttatgggtacatggttgatttgttgacaagaacac 21724317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 21804197 - 21804053
Alignment:
Q  142 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 241  Q
    |||||||||||| ||||  |||||||||||| | |||||||||||||||||||| ||||| || ||||||||||||||| |  |||||||||| || |||    
T  21804197 tatatttcaacatcaaacatgaatccaggtctaggtagttaagcacactaaaaaccctaataaataaaacaaaataaac-cctgaaattgaacaaagaat 21804099  T
Q  242 caggtacaagtttatgggaacatggttgatttgttgaagagaacac 287  Q
    |||| ||||||||||||| ||||||||||||||||||  |||||||    
T  21804098 caggcacaagtttatgggtacatggttgatttgttgacaagaacac 21804053  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 14330989 - 14330845
Alignment:
Q  142 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 241  Q
    |||||||||||| ||||  |||||||||||| | |||||||||||||||||||| ||||| || ||||| ||||||||| |  |||||||||| || |||    
T  14330989 tatatttcaacatcaaacatgaatccaggtctaggtagttaagcacactaaaaaccctaagaaataaaaaaaaataaac-cctgaaattgaacaaagaat 14330891  T
Q  242 caggtacaagtttatgggaacatggttgatttgttgaagagaacac 287  Q
    |||  ||||||||||||||||||||||||||||||||  |||||||    
T  14330890 cagtcacaagtttatgggaacatggttgatttgttgacaagaacac 14330845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 176 - 286
Target Start/End: Complemental strand, 24251645 - 24251537
Alignment:
Q  176 gtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcaggtacaagtttatgggaacatggttgatttgt 275  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| | | |||||||| ||| || ||||||||||||||||| |||||| |||||||||    
T  24251645 gtagttaagcacactaaaaaccctaataagtaaaacaaaataaacccta-aaattgaa-caagaaccaggtacaagtttatggtaacatgcttgatttgt 24251548  T
Q  276 tgaagagaaca 286  Q
    |||||| ||||    
T  24251547 tgaagaaaaca 24251537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 146 - 290
Target Start/End: Complemental strand, 30231180 - 30231037
Alignment:
Q  146 tttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcagg 245  Q
    |||||||| ||||  |||||||| ||| | |||||||| ||||| ||||||||||| |||||||||||||||||| | | ||||||||||||  |||| |    
T  30231180 tttcaacagcaaacatgaatccaagtctaggtagttaaacacacaaaaaatcctaataagtaaaacaaaataaacccta-aaattgaaccaagcatcatg 30231082  T
Q  246 tacaagtttatgggaacatggttgatttgttgaagagaacactga 290  Q
    ||||||||||||| |||||| ||||||||||||||| ||||||||    
T  30231081 tacaagtttatggtaacatgcttgatttgttgaagaaaacactga 30231037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 18748671 - 18748751
Alignment:
Q  197 cctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcaggtacaagtttatgggaacatggttgatttgttgaa 279  Q
    ||||| |||||||||||||||||| | | ||||||||| || |||||||||||||||||||| |||||| | |||||||||||    
T  18748671 cctaataagtaaaacaaaataaacccta-aaattgaac-aagaatcaggtacaagtttatggtaacatgctagatttgttgaa 18748751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 18748626 - 18748670
Alignment:
Q  176 gtagttaagcacactaaaaatcctaacaagtaaaacaaaataaac 220  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  18748626 gtagttaagcacactaaaaaccctaataagtaaaacaaaataaac 18748670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 146 - 290
Target Start/End: Complemental strand, 23246840 - 23246698
Alignment:
Q  146 tttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcagg 245  Q
    |||||||| ||||  |||||| | ||| | |||||||||||||||||||| ||||| |||||||||||||||||| | | ||||||||| || |||||||    
T  23246840 tttcaacatcaaacatgaatctatgtctaggtagttaagcacactaaaaaccctaataagtaaaacaaaataaacccta-aaattgaac-aagaatcagg 23246743  T
Q  246 tacaagtttatgggaacatggttgatttgttgaagagaacactga 290  Q
    ||||||||||||| |||||| ||||||||||||||| ||||||||    
T  23246742 tacaagtttatggtaacatgcttgatttgttgaagaaaacactga 23246698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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