View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0587_low_14 (Length: 346)
Name: NF0587_low_14
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0587_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 11119442 - 11119686
Alignment:
| Q |
22 |
catcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctcc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119442 |
catcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctcc |
11119541 |
T |
|
| Q |
122 |
atcatcattgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcattt |
221 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
11119542 |
atcatcgttgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccattt |
11119641 |
T |
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| Q |
222 |
cctaaattcaccttaggttcaacatacaattcaacatcacacttc |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119642 |
cctaaattcaccttaggttcaacatacaattcaacatcacacttc |
11119686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 12205970 - 12206175
Alignment:
| Q |
41 |
aaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttca |
140 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
12205970 |
aaccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttca |
12206069 |
T |
|
| Q |
141 |
ccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcaccttaggtt |
240 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12206070 |
ccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttaggtt |
12206169 |
T |
|
| Q |
241 |
caacat |
246 |
Q |
| |
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|||||| |
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| T |
12206170 |
caacat |
12206175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 32741144 - 32741389
Alignment:
| Q |
20 |
gacatcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatct |
119 |
Q |
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|
||||| |||||||| |||||||||| |||||||| ||||||||||||| |||| |||| |||||||||| ||| |||||||||||||||||||||||||| |
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| T |
32741144 |
gacattatcaaacccatcatcaaccgcagccatcttctcttcttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatct |
32741243 |
T |
|
| Q |
120 |
ccatcatcattgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcat |
219 |
Q |
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|
||| |||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||| |
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| T |
32741244 |
ccaccatcgatgtctacttcaccaacatcgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcat |
32741343 |
T |
|
| Q |
220 |
ttcctaaattcaccttaggttcaacatacaattcaacatcacactt |
265 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32741344 |
ttcctaaattcaccttaggttcaacatacaattcaacatcgcactt |
32741389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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