View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0587_low_15 (Length: 335)
Name: NF0587_low_15
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0587_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 25602144 - 25602458
Alignment:
| Q |
1 |
cttgtatctgatgaattttgccttttacggtgatgaaagcagttgtgttgaaccctttttgtcctttaaaatgttgaatagtttggtcattcagaattgt |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25602144 |
cttgtatctgatgaattttgccttttgcggtgatgaaagcagttgtgttgaaccctttttggcctttaaaatgttgaatagtttggtcattcagaattgt |
25602243 |
T |
|
| Q |
101 |
gaggtaaggaatgcacgtgtctttgtcatatcaagtgaaaccctagtcaatttatctatctacaatcgttcactcgaatttaccataactgacacaattg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| ||||| |
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| T |
25602244 |
gaggtaaggaacgcacgtgtctttgtcatatcaagtgaaaccctagtcaatttatctatctataaccgttcactcaaatttaccataactgacaaaattg |
25602343 |
T |
|
| Q |
201 |
aactatctactccaagtctttgtacctttacttataatggtagtccttctcagaaaatatgtgagaaaagtcggtcttctattactatatccactcttaa |
300 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25602344 |
aactatctactccaagtcttcgtacctttacttataatggtagtccttctcagaaaatatgtgagaaaggtcggtcttctattactatatccactcttaa |
25602443 |
T |
|
| Q |
301 |
ggtacgtgatgatgt |
315 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
25602444 |
ggtacgttatgatgt |
25602458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 25597360 - 25597635
Alignment:
| Q |
13 |
gaattttgccttttacggtgatgaaagcagttgtgttgaaccctttttgtcctttaaaatgttgaatagtttggtcattcagaattgtgaggtaaggaat |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |
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|
| T |
25597360 |
gaattttgccttttgcggtgatgaaagcagttgtgttgagccctttttcgcctttaaaatgttgaatagtttggtcattcagaaatgtgaggtaagggat |
25597459 |
T |
|
| Q |
113 |
gcacgtgtctttgtcatatcaagtgaaaccctagtcaatttatctatctacaatcgttcactcgaatttaccataactgacacaattgaactatctactc |
212 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||| ||||| | | | |||| ||||||||| |||| |||||| ||||||||| |
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| T |
25597460 |
gcccgtgtcttggtcatatcaagtgaaaccctagtcaatttatctatcaacaatagcccgcacgaagataccataaccgacaaaattgagttatctactc |
25597559 |
T |
|
| Q |
213 |
caagtctttgtacctttacttataatggtagtccttctcagaaaatatgtgagaaaagtcggtcttctattactat |
288 |
Q |
| |
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||||||| ||| |||| |||||| || | | | |||||||||||||||| ||| ||| ||||||||| |||| |
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| T |
25597560 |
caagtctacgtaacttttcttatagaggcaaccatgctcagaaaatatgtgacaaaggtcattcttctatttctat |
25597635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 20994381 - 20994324
Alignment:
| Q |
197 |
attgaactatctactccaagtctttgtacctttacttataatggtagtccttctcaga |
254 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||||| |||||||| ||||| ||||| |
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|
| T |
20994381 |
attgagctatgtactccaagtctttgtacgtttacttttaatggtattccttatcaga |
20994324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 55116949 - 55116748
Alignment:
| Q |
40 |
cagttgtgttgaaccctttttgtcctttaaaatgttgaatagtttggtcattcagaattgtgaggtaaggaatgcacgtgtctttgtcatatcaagtgaa |
139 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||| || |||||||||| |||| | |||||||||||| |||||| |||||| |||||||||||||| |
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| T |
55116949 |
cagttgtgatgagccctttttatcctttaaaaggtcgaatagtttgttcatctgtaggtgtgaggtaagggatgcacatgtcttcatcatatcaagtgaa |
55116850 |
T |
|
| Q |
140 |
a-----ccctagtcaatttatctatctacaatcgttcactcgaatttaccataactgacacaattgaactatctactccaagtctttgtacctttactta |
234 |
Q |
| |
|
|||| || ||||||||||| | ||| ||| |||||| ||| ||||| || |||| | |||||| |||||||||||||||| |||||||| |
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|
| T |
55116849 |
gtgaagcccttgttaatttatctatttgtaataaatcatcagaatttgccaaaactgccaaaattaagctatctgctccaagtctttgtacttttactta |
55116750 |
T |
|
| Q |
235 |
ta |
236 |
Q |
| |
|
|| |
|
|
| T |
55116749 |
ta |
55116748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 36636389 - 36636336
Alignment:
| Q |
210 |
ctccaagtctttgtacctttacttataatggtagtccttctcagaaaatatgtg |
263 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |||| |||||||||||||| |
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|
| T |
36636389 |
ctccaagtctttgtacctttacttttactggtactcctgttcagaaaatatgtg |
36636336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 38862740 - 38862689
Alignment:
| Q |
196 |
aattgaactatctactccaagtctttgtacctttacttataatggtagtcct |
247 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||| || ||||||||| |
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|
| T |
38862740 |
aattgagctatctactccaagtctatgtacctttacttttagcggtagtcct |
38862689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 36643052 - 36643010
Alignment:
| Q |
203 |
ctatctactccaagtctttgtacctttacttataatggtagtc |
245 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||| |
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|
| T |
36643052 |
ctatctactccaagtctttgtacatttacttttattggtagtc |
36643010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 36643257 - 36643187
Alignment:
| Q |
22 |
cttttacggtgatgaaagcagttgtgttgaaccctttttgtcctttaaaatgttgaatagtttggtcattc |
92 |
Q |
| |
|
||||| ||||| ||||||| |||||| ||| ||||||||| ||||| || |||||||||||||| ||||| |
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|
| T |
36643257 |
cttttgcggtggtgaaagcggttgtgctgatccctttttggcctttccaaagttgaatagtttgggcattc |
36643187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 36629773 - 36629866
Alignment:
| Q |
14 |
aattttgccttttacggtgatgaaagcagttgtgttgaaccctttttgtcctttaaaatgttgaatagtttggtcattcagaattgtgaggtaa |
107 |
Q |
| |
|
||||||||||||| ||| | ||||| | |||||| ||| ||||||| | |||||| || ||||||||||||| || ||| | ||||||||||| |
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|
| T |
36629773 |
aattttgccttttgcggcggtgaaaacggttgtgctgagcccttttcgacctttacaaagttgaatagtttgatccttcgtagttgtgaggtaa |
36629866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 55966666 - 55966578
Alignment:
| Q |
28 |
cggtgatgaaagcagttgtgttgaaccctttttgtcctttaaaatgttgaatagtttggtcattcagaattgtgaggtaaggaatgcac |
116 |
Q |
| |
|
||||||||||| | |||||| ||| ||||||||| ||||| | ||||| |||||||||||||| ||||||||||||| |||||| |
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|
| T |
55966666 |
cggtgatgaaaacggttgtgctgagccctttttgggctttaccaagttgagtagtttggtcattcgtgtttgtgaggtaagggatgcac |
55966578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 42602516 - 42602439
Alignment:
| Q |
14 |
aattttgccttttacggtgatgaaagcagttgtgttgaaccctttttgtcctttaaaatgttgaatagtttggtcatt |
91 |
Q |
| |
|
||||||||||||| ||||||||||| || ||| ||||||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
42602516 |
aattttgccttttgcggtgatgaaaatggtcgtgctgaaccctttttgacctttaccaggttgaatagtttggtcatt |
42602439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 19657805 - 19657759
Alignment:
| Q |
190 |
tgacacaattgaactatctactccaagtctttgtacctttacttata |
236 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
19657805 |
tgacaaaattgagttatctacttcaagtctttgtacctttacttata |
19657759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 19674644 - 19674598
Alignment:
| Q |
190 |
tgacacaattgaactatctactccaagtctttgtacctttacttata |
236 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
19674644 |
tgacaaaattgagttatctacttcaagtctttgtacctttacttata |
19674598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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