View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0587_low_20 (Length: 315)
Name: NF0587_low_20
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0587_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 24 - 286
Target Start/End: Complemental strand, 25924231 - 25923969
Alignment:
| Q |
24 |
tcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaacttta |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25924231 |
tcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaacttta |
25924132 |
T |
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| Q |
124 |
tttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttagg |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25924131 |
tttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatctattacaaacttgtttcagagttagg |
25924032 |
T |
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| Q |
224 |
tgaagaaacatgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcat |
286 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25924031 |
tgaagaaacatgtaaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcat |
25923969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 25905390 - 25905126
Alignment:
| Q |
22 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25905390 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaactt |
25905291 |
T |
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| Q |
122 |
tatttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagtta |
221 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25905290 |
catttccgtcaaaaataacaaccttcacatcaaccaatcaaccacttattcaatactcgaaaactctgaaacaatcaattacaaacttgtttcagagtta |
25905191 |
T |
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| Q |
222 |
ggtgaagaaacatgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcat |
286 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25905190 |
ggcgaagaaacatgtaaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcat |
25905126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 25884056 - 25883792
Alignment:
| Q |
22 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25884056 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaactt |
25883957 |
T |
|
| Q |
122 |
tatttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagtta |
221 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
25883956 |
catttccgtcaaaaacaacaacattcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatccgttacaaacttgtttcggagtta |
25883857 |
T |
|
| Q |
222 |
ggtgaagaaa-catgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcat |
286 |
Q |
| |
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|| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25883856 |
gg-gaagaaagcatgtaaaaccatgtcaatttctgtaacattgggaattacaaatactggaagcat |
25883792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 25961036 - 25961300
Alignment:
| Q |
22 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961036 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactt |
25961135 |
T |
|
| Q |
122 |
tatttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagtta |
221 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||| |||||| |
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| T |
25961136 |
catttccgtcaaaaataacaaccttcacatcaaccaatcaaccacttattcaatactcgaaaaatctcaaacaatccattacaaacttgtttcggagtta |
25961235 |
T |
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| Q |
222 |
ggtgaagaaa-catgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcat |
286 |
Q |
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|| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25961236 |
gg-gaagaaagcatgtaaaaccatgtcaatttctgtaacattgggaattacaaatactggaagcat |
25961300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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