View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0587_low_22 (Length: 311)
Name: NF0587_low_22
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0587_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 52 - 304
Target Start/End: Original strand, 49169760 - 49170025
Alignment:
| Q |
52 |
aaaaaagggaagagatttcaaataagttcaacttcaatagaatgattaaactcaaatctggacaaaaaagggaagagatttcaaataagttcaacttcga |
151 |
Q |
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| T |
49169760 |
aaaaaagataagagatttcaaatgagttcaacttcaatagaatgattaaactcaaatctggacaaaaaagggaagagatttcaaataagttcaacttcga |
49169859 |
T |
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| Q |
152 |
cagtttgattaaactcaaatctagtattgact---nnnnnnnnntttaga---------tatcaagctcacatttgactttgagggcgcagaactgaaga |
239 |
Q |
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| T |
49169860 |
cagtttgattaaactcaaatctagtattgactaaaaaaaaaaaaattagatatcaaagatatcaagctcacatttgactttgagggcgcagaactgaaga |
49169959 |
T |
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| Q |
240 |
aattcattttccgcttttaatgatcttagctcgtctcatttg-aaaactatatatgagaataatct |
304 |
Q |
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| T |
49169960 |
aattcattttccgcttttaacgatcttagctcgtctcatttgaaaaactatatatgataataatct |
49170025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 49169772 - 49169881
Alignment:
| Q |
1 |
agatttcaaataagttcaacttcaatagaatgattaaactcaaatctggacaaaaaagggaagagatttcaaataagttcaacttcaatagaatgattaa |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |
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| T |
49169772 |
agatttcaaatgagttcaacttcaatagaatgattaaactcaaatctggacaaaaaagggaagagatttcaaataagttcaacttcgacagtttgattaa |
49169871 |
T |
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| Q |
101 |
actcaaatct |
110 |
Q |
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| T |
49169872 |
actcaaatct |
49169881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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