View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0587_low_24 (Length: 302)

Name: NF0587_low_24
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0587_low_24
NF0587_low_24
[»] chr7 (3 HSPs)
chr7 (30-265)||(27272926-27273166)
chr7 (32-71)||(9332985-9333024)
chr7 (216-265)||(27282622-27282671)
[»] chr3 (4 HSPs)
chr3 (114-216)||(6077828-6077932)
chr3 (30-83)||(6077743-6077796)
chr3 (32-71)||(22157926-22157965)
chr3 (119-176)||(9765844-9765900)
[»] chr6 (1 HSPs)
chr6 (32-151)||(13550309-13550421)
[»] chr8 (1 HSPs)
chr8 (31-212)||(43651575-43651750)
[»] chr5 (1 HSPs)
chr5 (31-212)||(21114784-21114959)
[»] chr4 (2 HSPs)
chr4 (33-81)||(7807628-7807676)
chr4 (101-216)||(39482402-39482516)
[»] chr2 (1 HSPs)
chr2 (113-212)||(24863595-24863692)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 27273166 - 27272926
Alignment:
Q  30 acaattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacnnnnnnnn-----ccaatgaaaatgggagtatggacgttccaaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||    
T  27273166 acaattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacaaaaaaaaaaaaaccaatgaaaatgggagtatggacgttccaaa 27273067  T
Q  125 ttacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttatcatctctcaaag 224  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27273066 ttacaattgcaagagacgtttcatccacagataaagacgaaaacatgacagggtttcatcaagtttctatctttcttatcccttttatcatctctcaaag 27272967  T
Q  225 aaataatgaaaatgtttgagaaaatcaaacaaggcacaatt 265  Q
     ||||||||||||| ||||||||||||||||||||||||||    
T  27272966 gaataatgaaaatgcttgagaaaatcaaacaaggcacaatt 27272926  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 9333024 - 9332985
Alignment:
Q  32 aattgctaatgagaattgaggattgagcggctctattgtt 71  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  9333024 aattgctaatgagaattgaggaatgagcggttctattgtt 9332985  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 27282671 - 27282622
Alignment:
Q  216 ctctcaaagaaataatgaaaatgtttgagaaaatcaaacaaggcacaatt 265  Q
    ||||||||| ||||||||||||||| ||||||  ||||||||| ||||||    
T  27282671 ctctcaaaggaataatgaaaatgttagagaaacccaaacaaggtacaatt 27282622  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 6077828 - 6077932
Alignment:
Q  114 gacgttccaaattacaattgcaagag--acgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatccctttta 211  Q
    ||||||||||||||||||||||||||  |||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||    
T  6077828 gacgttccaaattacaattgcaagagagacgtttcatccaaagataaagaggaaagcatgacagggtttcaccaagtttctatatttcttttccctttta 6077927  T
Q  212 tcatc 216  Q
    |||||    
T  6077928 tcatc 6077932  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 6077743 - 6077796
Alignment:
Q  30 acaattgctaatgagaattgaggattgagcggctctattgtttttcttctcagg 83  Q
    |||||||| ||||||||||||||||||| | | |||||||||||||||||||||    
T  6077743 acaattgcaaatgagaattgaggattgaccagttctattgtttttcttctcagg 6077796  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 22157965 - 22157926
Alignment:
Q  32 aattgctaatgagaattgaggattgagcggctctattgtt 71  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  22157965 aattgctaatgagaattgaggaatgagcggttctattgtt 22157926  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 9765844 - 9765900
Alignment:
Q  119 tccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagg 176  Q
    ||||||||||||||||||||||| ||||||||| | ||| ||| |||| |||||||||    
T  9765844 tccaaattacaattgcaagagacatttcatccaaagatagagaggaaa-catgacagg 9765900  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 13550421 - 13550309
Alignment:
Q  32 aattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacnnnnnnnnccaatgaaaatgggagtatggacgttccaaattacaat 131  Q
    ||||||||||||||||||||||||||| || |||||||||||      ||||||        |||||||||||||||| | |||||||||||||||||||    
T  13550421 aattgctaatgagaattgaggattgaggggttctattgtttt------caggacaaaaaaa-ccaatgaaaatgggagcagggacgttccaaattacaat 13550329  T
Q  132 tgcaagagacgtttcatcca 151  Q
    | ||||||||||||||||||    
T  13550328 tacaagagacgtttcatcca 13550309  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 43651750 - 43651575
Alignment:
Q  31 caattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacnnnnnnnnccaatgaaaatgggagtatggacgttccaaattacaa 130  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||| ||| |||         ||| ||||||||||| | |||||| |||||||||||    
T  43651750 caattgctaatgagaattgaggattgaacagttctattgtttttcttttcaagacaaagaat--caa-gaaaatgggagcagggacgt-ccaaattacaa 43651655  T
Q  131 ttgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttat 212  Q
    ||||||||||| ||||||||| | ||| ||| |||| ||||||| ||||||||| |   ||||| ||||||||| |||||||    
T  43651654 ttgcaagagacatttcatccaaagatagagaggaaa-catgaca-ggtttcaccgaagatctatatttcttatctcttttat 43651575  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 21114959 - 21114784
Alignment:
Q  31 caattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacnnnnnnnnccaatgaaaatgggagtatggacgttccaaattacaa 130  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||| ||| |||         ||| ||||||||||| | |||||| |||||||||||    
T  21114959 caattgctaatgagaattgaggattgaacagttctattgtttttcttttcaagacaaagaat--caa-gaaaatgggagcagggacgt-ccaaattacaa 21114864  T
Q  131 ttgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttat 212  Q
    ||||||||||| ||||||||| | ||| ||| |||| ||||||| ||||||||| |   ||||| ||||||||| |||||||    
T  21114863 ttgcaagagacatttcatccaaagatagagaggaaa-catgaca-ggtttcaccgaagatctatatttcttatctcttttat 21114784  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 7807676 - 7807628
Alignment:
Q  33 attgctaatgagaattgaggattgagcggctctattgtttttcttctca 81  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  7807676 attgctaataagaattgaggattgagcggtactattgtttttcttctca 7807628  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 39482516 - 39482402
Alignment:
Q  101 aaatgggagtatggacgttccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttct 200  Q
    ||||||||| | ||||||||||||||||||||| ||||||| ||||||| | |  || | | | || ||||||||||||| ||||| | || || ||| |    
T  39482516 aaatgggagcagggacgttccaaattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttat 39482418  T
Q  201 tatcccttttatcatc 216  Q
    |||| |||||||||||    
T  39482417 tatctcttttatcatc 39482402  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 24863692 - 24863595
Alignment:
Q  113 ggacgttccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttat 212  Q
    |||||| |||||| ||||||||||||||| ||| ||||| | ||| ||| |||| ||||||| |||||||||||   ||||| ||||||||| |||||||    
T  24863692 ggacgtcccaaataacaattgcaagagacatttaatccaaagatagagaggaaa-catgaca-ggtttcaccaaagatctatatttcttatctcttttat 24863595  T

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