View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0587_low_29 (Length: 251)

Name: NF0587_low_29
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0587_low_29
NF0587_low_29
[»] chr7 (6 HSPs)
chr7 (116-179)||(34535795-34535858)
chr7 (116-179)||(7460816-7460879)
chr7 (117-176)||(6376608-6376667)
chr7 (121-156)||(34535952-34535987)
chr7 (116-157)||(22566405-22566446)
chr7 (142-179)||(36469564-36469601)
[»] chr6 (11 HSPs)
chr6 (116-179)||(28613270-28613333)
chr6 (121-179)||(19279068-19279126)
chr6 (120-179)||(10567571-10567630)
chr6 (120-179)||(34829801-34829860)
chr6 (1-43)||(28613156-28613198)
chr6 (203-245)||(28613358-28613400)
chr6 (118-179)||(29674983-29675044)
chr6 (116-176)||(13498181-13498241)
chr6 (117-179)||(22793542-22793604)
chr6 (116-157)||(10567729-10567770)
chr6 (205-241)||(10567654-10567690)
[»] chr4 (24 HSPs)
chr4 (116-179)||(4416723-4416786)
chr4 (116-179)||(37724670-37724733)
chr4 (116-179)||(45505305-45505368)
chr4 (116-179)||(49984044-49984107)
chr4 (116-179)||(45170730-45170793)
chr4 (120-175)||(18414830-18414885)
chr4 (130-179)||(11306371-11306420)
chr4 (118-179)||(17524310-17524371)
chr4 (116-157)||(37724543-37724584)
chr4 (116-156)||(4416580-4416620)
chr4 (116-179)||(4592474-4592537)
chr4 (116-179)||(46397410-46397473)
chr4 (121-179)||(20871077-20871135)
chr4 (118-179)||(43913500-43913560)
chr4 (116-156)||(11306522-11306562)
chr4 (117-157)||(20870932-20870972)
chr4 (116-179)||(48845816-48845879)
chr4 (203-241)||(37724623-37724661)
chr4 (203-241)||(48845903-48845941)
chr4 (117-179)||(52485447-52485509)
chr4 (120-157)||(5665740-5665777)
chr4 (119-156)||(17524472-17524509)
chr4 (116-156)||(18414955-18414995)
chr4 (116-156)||(45505163-45505203)
[»] scaffold0056 (2 HSPs)
scaffold0056 (116-179)||(62830-62893)
scaffold0056 (116-157)||(62991-63032)
[»] chr1 (16 HSPs)
chr1 (118-179)||(48171540-48171601)
chr1 (116-179)||(33460136-33460199)
chr1 (116-179)||(35795417-35795480)
chr1 (116-179)||(14420025-14420088)
chr1 (121-179)||(18519426-18519484)
chr1 (117-179)||(22792523-22792585)
chr1 (117-170)||(3075175-3075228)
chr1 (122-179)||(30971960-30972017)
chr1 (120-179)||(34518072-34518130)
chr1 (118-179)||(19987579-19987640)
chr1 (116-179)||(143059-143122)
chr1 (116-179)||(42604875-42604938)
chr1 (118-156)||(19987440-19987478)
chr1 (116-154)||(34518225-34518263)
chr1 (116-156)||(31872868-31872908)
chr1 (116-156)||(42604734-42604774)
[»] chr8 (11 HSPs)
chr8 (116-179)||(7535499-7535562)
chr8 (116-179)||(18429517-18429580)
chr8 (116-179)||(18548642-18548705)
chr8 (120-175)||(25879675-25879730)
chr8 (116-175)||(34439326-34439385)
chr8 (116-179)||(4623173-4623236)
chr8 (116-179)||(7644883-7644946)
chr8 (116-179)||(16049584-16049647)
chr8 (204-241)||(34439415-34439452)
chr8 (116-157)||(34439491-34439532)
chr8 (118-179)||(35731649-35731710)
[»] chr2 (19 HSPs)
chr2 (116-179)||(14473775-14473838)
chr2 (116-179)||(29526699-29526762)
chr2 (116-179)||(27956966-27957029)
chr2 (127-179)||(13140408-13140460)
chr2 (120-179)||(43513804-43513863)
chr2 (116-179)||(3217389-3217452)
chr2 (116-179)||(3221072-3221135)
chr2 (116-179)||(24015915-24015978)
chr2 (116-154)||(13490278-13490316)
chr2 (117-179)||(24283904-24283966)
chr2 (116-157)||(44995327-44995368)
chr2 (116-156)||(29526862-29526902)
chr2 (116-179)||(1352936-1352999)
chr2 (203-241)||(13490359-13490397)
chr2 (118-172)||(32622295-32622349)
chr2 (118-179)||(6795278-6795339)
chr2 (117-158)||(14473582-14473623)
chr2 (203-236)||(44995250-44995283)
chr2 (116-148)||(32622465-32622497)
[»] chr3 (8 HSPs)
chr3 (116-179)||(33419644-33419707)
chr3 (131-179)||(30547857-30547905)
chr3 (116-152)||(30548004-30548040)
chr3 (117-176)||(48618730-48618789)
chr3 (203-241)||(33419731-33419769)
chr3 (203-241)||(54341387-54341425)
chr3 (122-179)||(37285658-37285715)
chr3 (116-157)||(54341307-54341348)
[»] chr5 (2 HSPs)
chr5 (120-179)||(33992581-33992640)
chr5 (116-178)||(16642854-16642916)
[»] scaffold0548 (2 HSPs)
scaffold0548 (130-179)||(3149-3198)
scaffold0548 (116-156)||(3300-3340)


Alignment Details
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 34535795 - 34535858
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  34535795 ggtccaaaacgttactcatattggaataagttagtcccttccgcgacatgatattgagtttaat 34535858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 7460879 - 7460816
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||| ||||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||||    
T  7460879 ggtctaaaacgttactcacgttggaataagttagtctctttcgcgacatgatattgagtttaat 7460816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 6376667 - 6376608
Alignment:
Q  117 gtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagttt 176  Q
    ||||||||||||| ||| |||  |||||||||||||||||| ||||||||||||||||||    
T  6376667 gtccaaaacgttattcacgttaaaataagttagtcccttccgcgacatgatattgagttt 6376608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 34535987 - 34535952
Alignment:
Q  121 aaaacgttactcatgttggaataagttagtcccttc 156  Q
    ||||||||||||| ||||||||||||||||||||||    
T  34535987 aaaacgttactcacgttggaataagttagtcccttc 34535952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 22566405 - 22566446
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttcc 157  Q
    |||||||||||||||||| |||| ||||| ||||||||||||    
T  22566405 ggtccaaaacgttactcacgttgaaataaattagtcccttcc 22566446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 36469564 - 36469601
Alignment:
Q  142 taagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  36469564 taagttggtctcttccacgacatgatattgagtttaat 36469601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 28613270 - 28613333
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  28613270 ggtccaaaacgttactcatattggaataagttagtctcttccacgacatgatattgagtttaat 28613333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 19279068 - 19279126
Alignment:
Q  121 aaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||    
T  19279068 aaaacgttactcacgttggaataagttagtccgttccatgacataatattgagtttaat 19279126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 10567571 - 10567630
Alignment:
Q  120 caaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||  ||| |||||||||||| |||| ||||||||||||||||||||||    
T  10567571 caaaacgttactcacattgaaataagttagtctcttctacgacatgatattgagtttaat 10567630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 34829860 - 34829801
Alignment:
Q  120 caaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||| ||| ||| ||||||||||||| |||||||| |||||||||||||||||    
T  34829860 caaaacgttacccatattgaaataagttagtcctttccacgagatgatattgagtttaat 34829801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28613156 - 28613198
Alignment:
Q  1 atgagtgtaatttagtttgttgtgatagaaaaaataaggctta 43  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  28613156 atgagtgtaatttagttcgttgtgatagaaaaaataaggctta 28613198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 28613358 - 28613400
Alignment:
Q  203 tgttttaaagttgattttttaaataagttaagtttcatctcac 245  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  28613358 tgttttaaagctgattttttaaataagttaagtttcatctcac 28613400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 29674983 - 29675044
Alignment:
Q  118 tccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||| | ||||| |||||||||| |||||||||||||| ||||||||||||| |||||    
T  29674983 tccaaaacatgactcacgttggaataaattagtcccttccacaacatgatattgaggttaat 29675044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 13498181 - 13498241
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagttt 176  Q
    |||||||||| |||||||| ||||||||||||| ||||||||   |||| |||||||||||    
T  13498181 ggtccaaaaccttactcatattggaataagttaatcccttccgtaacataatattgagttt 13498241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 22793604 - 22793542
Alignment:
Q  117 gtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||| ||||||||| |||||||||||||| |||||   ||||| |||||||||| ||||    
T  22793604 gtccaaaatgttactcatattggaataagttagcccctttagcgacaggatattgagtctaat 22793542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 10567770 - 10567729
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttcc 157  Q
    |||||||||| ||||||| ||||||||||||||||| |||||    
T  10567770 ggtccaaaacattactcacgttggaataagttagtctcttcc 10567729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 10567654 - 10567690
Alignment:
Q  205 ttttaaagttgattttttaaataagttaagtttcatc 241  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  10567654 ttttaaaattgattttttaaataagttaagttccatc 10567690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 4416786 - 4416723
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  4416786 ggtccaaaacgttactcacattggaataagttagtcccttccacgacatgatattgagtttaat 4416723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 37724733 - 37724670
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||    
T  37724733 ggtccaaaacgttactcacgttggaataagttagtctcttccatgacatgatattgagtttaat 37724670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 45505368 - 45505305
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||||||  || ||||||||||||| |||||||||||||||||||||||||||    
T  45505368 ggtccaaaacgttactcacattagaataagttagtctcttccacgacatgatattgagtttaat 45505305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 49984107 - 49984044
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||| || ||||||||    
T  49984107 ggtccaaaacgttactcacgttggaataagttagtcccttccacgacctgatgttaagtttaat 49984044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 45170730 - 45170793
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||| |||||||| |||||||||||||||||  ||||| ||||||||||||||||||||    
T  45170730 ggtccaaaatgttactcacgttggaataagttagtctgttccatgacatgatattgagtttaat 45170793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 18414830 - 18414885
Alignment:
Q  120 caaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtt 175  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||    
T  18414830 caaaacgttactcacgttggaataagttagtctcttccgcgacatgatactgagtt 18414885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 11306371 - 11306420
Alignment:
Q  130 ctcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  11306371 ctcacgttagaataagttagtccctttcacgacatgatattgagtttaat 11306420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 17524310 - 17524371
Alignment:
Q  118 tccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||||  ||||||||||||||||| ||   |||||||||||||||||||||    
T  17524310 tccaaaacgttactcacattggaataagttagtccattatgcgacatgatattgagtttaat 17524371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 37724543 - 37724584
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttcc 157  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  37724543 ggtccaaaacgttactcatgttggaataagttagtctcttcc 37724584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 4416580 - 4416620
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttc 156  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  4416580 ggtccaaaacgttactcacgttggaataagttagtcccttc 4416620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 4592474 - 4592537
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||| ||||||||||||||  |||||||| |||||  ||||| |||||||||||||||||||||    
T  4592474 ggtcaaaaacgttactcataatggaataaattagtttcttccgcgacatgatattgagtttaat 4592537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 46397410 - 46397473
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||||| |||  ||||| ||||| | ||| ||||||||||||||||||||||    
T  46397410 ggtccaaaacgttactcacgttcaaataaattagttcattcaacgacatgatattgagtttaat 46397473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 20871135 - 20871077
Alignment:
Q  121 aaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||| |||| ||||||||||||| ||||||| | | |||||||||||||||||||    
T  20871135 aaaacgttgctcacgttggaataagttggtccctttcgcaacatgatattgagtttaat 20871077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 43913500 - 43913560
Alignment:
Q  118 tccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||||  || |||| |||||| || ||||||||||||||||||||||||||    
T  43913500 tccaaaacgttactcacattagaatcagttag-ccattccacgacatgatattgagtttaat 43913560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 11306562 - 11306522
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttc 156  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  11306562 ggtccaaaacgttactcactttggaataagttagtcccttc 11306522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 20870932 - 20870972
Alignment:
Q  117 gtccaaaacgttactcatgttggaataagttagtcccttcc 157  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  20870932 gtccaaaacgttactcacattggaataagttagtcccttcc 20870972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 48845816 - 48845879
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||| ||||||||  ||| ||||||||||||  |||  |||||||||||||||||||||    
T  48845816 ggtccaaaatgttactcacattgaaataagttagtcttttctgcgacatgatattgagtttaat 48845879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 37724661 - 37724623
Alignment:
Q  203 tgttttaaagttgattttttaaataagttaagtttcatc 241  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  37724661 tgttttaaaattgattttttaaataagttaagttccatc 37724623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 48845903 - 48845941
Alignment:
Q  203 tgttttaaagttgattttttaaataagttaagtttcatc 241  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  48845903 tgttttaaaattggttttttaaataagttaagtttcatc 48845941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 52485447 - 52485509
Alignment:
Q  117 gtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||| ||||| |  ||| ||||||||| || ||||| |||||||||||||||||||||    
T  52485447 gtccaaaacattactgacattgaaataagttaatctcttccgcgacatgatattgagtttaat 52485509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 5665777 - 5665740
Alignment:
Q  120 caaaacgttactcatgttggaataagttagtcccttcc 157  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  5665777 caaaacgttactcacgttgaaataagttagtcccttcc 5665740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 17524509 - 17524472
Alignment:
Q  119 ccaaaacgttactcatgttggaataagttagtcccttc 156  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  17524509 ccaaaacgttacttacgttggaataagttagtcccttc 17524472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 18414995 - 18414955
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttc 156  Q
    |||||||||||||||||| |||| |||||||||||| ||||    
T  18414995 ggtccaaaacgttactcacgttgaaataagttagtctcttc 18414955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 45505163 - 45505203
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttc 156  Q
    ||||||||||| |||||| |||||||||| |||||||||||    
T  45505163 ggtccaaaacgctactcacgttggaataaattagtcccttc 45505203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 62830 - 62893
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||    
T  62830 ggtccaaaacgttactcacgttggaataagttagtctcttccacgacatgatatggagtttaat 62893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 63032 - 62991
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttcc 157  Q
    ||||||||||||||||||  |||||||||||||||| |||||    
T  63032 ggtccaaaacgttactcactttggaataagttagtctcttcc 62991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 48171540 - 48171601
Alignment:
Q  118 tccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||    
T  48171540 tccaaaacgttactcacgttggaataagttagtccattccgcgacatgatattgagtttaat 48171601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 33460199 - 33460136
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||||| ||||||||||||||||||||| | ||| ||| |||||||||||||    
T  33460199 ggtccaaaacgttactcacgttggaataagttagtccctttcgcgatatggtattgagtttaat 33460136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 35795417 - 35795480
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||| || ||| ||||||| ||||||||||| |||||||||||||||||||||    
T  35795417 ggtccaaaacgttacccacgtttgaataagctagtcccttccgcgacatgatattgagtttaat 35795480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 14420088 - 14420025
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||||| ||||||||||||||||| ||||| | | |||||||||| ||||||    
T  14420088 ggtccaaaacgttactcacgttggaataagttagtctcttccgcaagatgatattgaatttaat 14420025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 18519426 - 18519484
Alignment:
Q  121 aaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||  ||| |||||||||||||||||| | |||||||||||||||||||    
T  18519426 aaaacgttactcactttgaaataagttagtcccttccgcaacatgatattgagtttaat 18519484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 22792585 - 22792523
Alignment:
Q  117 gtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||||  |||||||||||||||| ||||  ||||||||||| |||||||||    
T  22792585 gtccaaaacgttactcacattggaataagttagtcgcttctgcgacatgatatcgagtttaat 22792523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 3075228 - 3075175
Alignment:
Q  117 gtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatatt 170  Q
    |||||||||||||||||  ||||||||||||||| | |||||||||||||||||    
T  3075228 gtccaaaacgttactcacattggaataagttagttcattccacgacatgatatt 3075175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 30971960 - 30972017
Alignment:
Q  122 aaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||  || |||||||||| |||||||| |||||||||||||||||||||    
T  30971960 aaacgttactcacatttgaataagttactcccttccgcgacatgatattgagtttaat 30972017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 34518072 - 34518130
Alignment:
Q  120 caaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||  ||| | ||||||||||||| ||||||||||||||||||||||||    
T  34518072 caaaacgttactcacattgaattaagttagtccct-ccacgacatgatattgagtttaat 34518130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 19987640 - 19987579
Alignment:
Q  118 tccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||| |  ||| ||||||||| || |||||||||||||||||||| ||||||    
T  19987640 tccaaaacgttacttacattgtaataagttaatctcttccacgacatgatattgaatttaat 19987579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 143122 - 143059
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||||| |||| |||||||||||| ||||   |||| |||||||| ||||||    
T  143122 ggtccaaaacgttactcacgttgcaataagttagtctcttctgtgacacgatattgactttaat 143059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 42604938 - 42604875
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||| |||||||||||||  || ||||||||| |||| |||| ||||||||||| |||||||||    
T  42604938 ggtcaaaaacgttactcacatttgaataagtttgtcctttccgcgacatgatatcgagtttaat 42604875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 19987440 - 19987478
Alignment:
Q  118 tccaaaacgttactcatgttggaataagttagtcccttc 156  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  19987440 tccaaaacgttactcacattggaataagttagtcccttc 19987478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 34518263 - 34518225
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtccct 154  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  34518263 ggtccaaaacgttactcacgttagaataagttagtccct 34518225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 31872908 - 31872868
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttc 156  Q
    |||||||||||||||||| |||||||||||  |||||||||    
T  31872908 ggtccaaaacgttactcacgttggaataagccagtcccttc 31872868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 42604734 - 42604774
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttc 156  Q
    |||| ||||||||||||| |||||||||||||||| |||||    
T  42604734 ggtctaaaacgttactcacgttggaataagttagttccttc 42604774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 7535562 - 7535499
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||||| |||| ||||||||||||||| || |||||||||||||||||||||    
T  7535562 ggtccaaaacgttactcacgttgaaataagttagtccctaccgcgacatgatattgagtttaat 7535499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 18429517 - 18429580
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||  ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||    
T  18429517 ggtccaaaatattactcacgttagaataagttagtcccttccacgacataatattgagtttaat 18429580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 18548642 - 18548705
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||| ||||||| |||| |||||||||||||||| | |||||||||||||||||||||    
T  18548642 ggtccaaaacattactcaagttgaaataagttagtccctttcgcgacatgatattgagtttaat 18548705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 25879675 - 25879730
Alignment:
Q  120 caaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtt 175  Q
    ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||    
T  25879675 caaaacgttacccacgttggaataagttagtcccttccgcgacatgatattgagtt 25879730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 34439326 - 34439385
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtt 175  Q
    |||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  34439326 ggtccaaaacgttattcacgttgcaataagttagtctcttccacgacatgatattgagtt 34439385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 4623173 - 4623236
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||| ||||||||  ||| |||||||||||||||||| |||||||||| ||||||||||    
T  4623173 ggtccaaaatgttactcacattgaaataagttagtcccttccgcgacatgatactgagtttaat 4623236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 7644883 - 7644946
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||| |||| |||||||  |||||||||||||||||||||| | |||||||||||||||||||    
T  7644883 ggtccgaaacattactcagattggaataagttagtcccttccgcaacatgatattgagtttaat 7644946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 16049584 - 16049647
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||| ||  ||||||||||||||||||||   |||||||||||||||||||||    
T  16049584 ggtccaaaacgttacccacattggaataagttagtcccttatgcgacatgatattgagtttaat 16049647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 34439415 - 34439452
Alignment:
Q  204 gttttaaagttgattttttaaataagttaagtttcatc 241  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  34439415 gttttaaaattgattttttaaataagttaagttccatc 34439452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 34439532 - 34439491
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttcc 157  Q
    |||||||||||||||||| |||||| |||||||||| |||||    
T  34439532 ggtccaaaacgttactcacgttggattaagttagtctcttcc 34439491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 35731649 - 35731710
Alignment:
Q  118 tccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||||   | |||||| ||||||||||| || |||| ||||||||||||||    
T  35731649 tccaaaacgttactcacagttgaataaattagtcccttcaaccacataatattgagtttaat 35731710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 14473838 - 14473775
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||||    
T  14473838 ggtccaaaacgttactcattttggaataagttagtcccttccgccacataatattgagtttaat 14473775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 29526699 - 29526762
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||| || | ||||||||||||||| ||||||||||||||||||||||||||    
T  29526699 ggtccaaaacgttacttatataggaataagttagtccattccacgacatgatattgagtttaat 29526762  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 27957029 - 27956966
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||||||||||  | |||||| ||||||||||| |||||||||||||||||||    
T  27957029 ggtccaaaacgttactcatgtttaagtaagtttgtcccttccaccacatgatattgagtttaat 27956966  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 13140408 - 13140460
Alignment:
Q  127 ttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  13140408 ttactcatgttggaataagttagtccattccgcgacatgatattgagtataat 13140460  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 43513863 - 43513804
Alignment:
Q  120 caaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||| |||| ||| |||| |||||||||||| |||||||||||||||||||||||||||    
T  43513863 caaaatgttattcacgttgaaataagttagtcacttccacgacatgatattgagtttaat 43513804  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 3217389 - 3217452
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||| ||||||||||||| ||||||||||||||||||||||    |||| ||||||||||||||    
T  3217389 ggtctaaaacgttactcacgttggaataagttagtcccttctgacacataatattgagtttaat 3217452  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 3221135 - 3221072
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||| ||||||||||||||||||||||||||| ||||||||    |||| ||||||||||||||    
T  3221135 ggtctaaaacgttactcatgttggaataagtttgtcccttctgtcacataatattgagtttaat 3221072  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 24015915 - 24015978
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||| ||||| |  ||| |||||||||||| ||||||| |||||||||||||||||||    
T  24015915 ggtccaaaacattactgacattgaaataagttagtctcttccacaacatgatattgagtttaat 24015978  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 13490278 - 13490316
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtccct 154  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  13490278 ggtccaaaacgttactcacgttggaataagttagtccct 13490316  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 24283904 - 24283966
Alignment:
Q  117 gtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||| ||||||||  |||||||||||| |||  ||||||||||||| ||||||||    
T  24283904 gtccaaaacgttgctcatgttaaaataagttagtctctttaacgacatgatattaagtttaat 24283966  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 44995368 - 44995327
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttcc 157  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  44995368 ggtccaaaacgttactcacgttggaataagttagtctcttcc 44995327  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 29526902 - 29526862
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttc 156  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  29526902 ggtccaaaacgttactcacgttggaataagttagtctcttc 29526862  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 1352936 - 1352999
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||| |||| |||| ||| |||| ||||||||||||||||   |||||||||||||||||||||    
T  1352936 ggtctaaaatgttattcacgttgaaataagttagtccctttagcgacatgatattgagtttaat 1352999  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 13490397 - 13490359
Alignment:
Q  203 tgttttaaagttgattttttaaataagttaagtttcatc 241  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  13490397 tgttttaaaattgattttctaaataagttaagtttcatc 13490359  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 32622295 - 32622349
Alignment:
Q  118 tccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattga 172  Q
    |||||||||||||  | ||| |||||||||||| |||||| ||||||||||||||    
T  32622295 tccaaaacgttacctacgttagaataagttagttccttccgcgacatgatattga 32622349  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 6795278 - 6795339
Alignment:
Q  118 tccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||| |||| | ||| || ||| ||| ||| |||||||||||||||||||    
T  6795278 tccaaaacgttactcacgttgaactaaatttgtctctttcactacatgatattgagtttaat 6795339  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 14473582 - 14473623
Alignment:
Q  117 gtccaaaacgttactcatgttggaataagttagtcccttcca 158  Q
    |||||||| |||| |||| |||||||||||||||||||||||    
T  14473582 gtccaaaatgttaatcatattggaataagttagtcccttcca 14473623  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 44995250 - 44995283
Alignment:
Q  203 tgttttaaagttgattttttaaataagttaagtt 236  Q
    ||||||||| ||||||||||||||||||||||||    
T  44995250 tgttttaaaattgattttttaaataagttaagtt 44995283  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 32622497 - 32622465
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagtta 148  Q
    |||||||||||||||||| ||||||||||||||    
T  32622497 ggtccaaaacgttactcacgttggaataagtta 32622465  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 33419644 - 33419707
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||||||  ||| |||||||||||| ||||| |||||||||||||||||||||    
T  33419644 ggtccaaaacgttactcacattgaaataagttagtctcttccgcgacatgatattgagtttaat 33419707  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 30547857 - 30547905
Alignment:
Q  131 tcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||||||||||||||||| |||  | |||||||||||||||||||    
T  30547857 tcatgttggaataagttagtccattcagcaacatgatattgagtttaat 30547905  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 30548040 - 30548004
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcc 152  Q
    ||||||||||||||||||||||| |||||||||||||    
T  30548040 ggtccaaaacgttactcatgttgaaataagttagtcc 30548004  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 48618789 - 48618730
Alignment:
Q  117 gtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagttt 176  Q
    ||||||||| ||| | | |||||||||||||||| ||||||  |||||||||||||||||    
T  48618789 gtccaaaactttatttacgttggaataagttagttccttccgtgacatgatattgagttt 48618730  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 33419731 - 33419769
Alignment:
Q  203 tgttttaaagttgattttttaaataagttaagtttcatc 241  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  33419731 tgttttaaaattggttttttaaataagttaagtttcatc 33419769  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 54341425 - 54341387
Alignment:
Q  203 tgttttaaagttgattttttaaataagttaagtttcatc 241  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  54341425 tgttttaaaattgattttttaaataagttaagttccatc 54341387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 37285658 - 37285715
Alignment:
Q  122 aaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||||||| ||| |||  |||||||||| ||||| | |||||||||||||||||||||    
T  37285658 aaacgttattcacgttaaaataagttagaccctttcgcgacatgatattgagtttaat 37285715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 54341307 - 54341348
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttcc 157  Q
    |||||||||||||||||| |||||||||||| |||| |||||    
T  54341307 ggtccaaaacgttactcacgttggaataagtcagtctcttcc 54341348  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 33992640 - 33992581
Alignment:
Q  120 caaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    ||||||||||||||||||||||||||||| |||||| |  || |||||||||||||||||    
T  33992640 caaaacgttactcatgttggaataagttaatccctttcgtgatatgatattgagtttaat 33992581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 16642854 - 16642916
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttccacgacatgatattgagtttaa 178  Q
    |||| |||||||||| || ||||||||||||||||| ||||    ||||||||||||||||||    
T  16642854 ggtctaaaacgttacgcacgttggaataagttagtctcttctgtcacatgatattgagtttaa 16642916  T

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Target: scaffold0548 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 3149 - 3198
Alignment:
Q  130 ctcatgttggaataagttagtcccttccacgacatgatattgagtttaat 179  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  3149 ctcacgttagaataagttagtccctttcacgacatgatattgagtttaat 3198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 3340 - 3300
Alignment:
Q  116 ggtccaaaacgttactcatgttggaataagttagtcccttc 156  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  3340 ggtccaaaacgttactcactttggaataagttagtcccttc 3300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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