View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0587_low_30 (Length: 251)

Name: NF0587_low_30
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0587_low_30
NF0587_low_30
[»] chr1 (5 HSPs)
chr1 (91-202)||(45998922-45999035)
chr1 (91-202)||(45994669-45994782)
chr1 (91-202)||(9791211-9791323)
chr1 (91-202)||(9795550-9795662)
chr1 (1-89)||(44192439-44192526)
[»] chr8 (2 HSPs)
chr8 (91-202)||(26763630-26763743)
chr8 (91-202)||(26767882-26767995)
[»] chr7 (2 HSPs)
chr7 (91-202)||(35926459-35926572)
chr7 (91-202)||(35930711-35930824)
[»] chr6 (1 HSPs)
chr6 (91-202)||(27695009-27695122)
[»] chr3 (3 HSPs)
chr3 (91-202)||(26708538-26708650)
chr3 (91-202)||(26712789-26712901)
chr3 (91-202)||(23434895-23435009)
[»] chr5 (2 HSPs)
chr5 (91-202)||(34632093-34632208)
chr5 (148-198)||(14715255-14715305)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 45998922 - 45999035
Alignment:
Q  91 gttggaatttagaaaagaaattaagcagacttttgagttctgaaaattgaaacacata--tttcattccttctaacaacctttaaatacaagaaattcat 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  45998922 gttggaatttagaaaagaaattaagcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaacctttaaatacaagaaattcat 45999021  T
Q  189 aatcaaaaataaac 202  Q
    ||||| ||||||||    
T  45999022 aatcagaaataaac 45999035  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 45994669 - 45994782
Alignment:
Q  91 gttggaatttagaaaagaaattaagcagacttttgagttctgaaaattgaaacacata--tttcattccttctaacaacctttaaatacaagaaattcat 188  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  45994669 gttggaatttagaaaagaaattatgcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaacctttaaatacaagaaattcat 45994768  T
Q  189 aatcaaaaataaac 202  Q
    ||||| ||||||||    
T  45994769 aatcagaaataaac 45994782  T

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Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 9791211 - 9791323
Alignment:
Q  91 gttggaatttagaaaagaaattaagcagacttttgagttctgaaaattgaa--acacatatttcattccttctaacaacctttaaatacaagaaattcat 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||  ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  9791211 gttggaatttagaaaagaaattaagcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaa-ctttaaatacaagaaattcat 9791309  T
Q  189 aatcaaaaataaac 202  Q
    ||||| ||||||||    
T  9791310 aatcagaaataaac 9791323  T

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Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 9795550 - 9795662
Alignment:
Q  91 gttggaatttagaaaagaaattaagcagacttttgagttctgaaaattgaa--acacatatttcattccttctaacaacctttaaatacaagaaattcat 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||  ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  9795550 gttggaatttagaaaagaaattaagcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaa-ctttaaatacaagaaattcat 9795648  T
Q  189 aatcaaaaataaac 202  Q
    ||||| ||||||||    
T  9795649 aatcagaaataaac 9795662  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 44192439 - 44192526
Alignment:
Q  1 agggcaaaatggtaactttcccccaagtggtgtatataagacaaattaaatggattttccacaagcttcgacaactttctctcactaaa 89  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||||||    
T  44192439 agggcaaaatggtaactttcccctaagtggtgtatataagacaaattatatggatttt-cacaagcttctacaactttctcgcactaaa 44192526  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 26763743 - 26763630
Alignment:
Q  91 gttggaatttagaaaagaaattaagcagacttttgagttctgaaaattgaaacacata--tttcattccttctaacaacctttaaatacaagaaattcat 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  26763743 gttggaatttagaaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcat 26763644  T
Q  189 aatcaaaaataaac 202  Q
    ||||| ||||||||    
T  26763643 aatcagaaataaac 26763630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 26767995 - 26767882
Alignment:
Q  91 gttggaatttagaaaagaaattaagcagacttttgagttctgaaaattgaaacacata--tttcattccttctaacaacctttaaatacaagaaattcat 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  26767995 gttggaatttagaaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcat 26767896  T
Q  189 aatcaaaaataaac 202  Q
    ||||| ||||||||    
T  26767895 aatcagaaataaac 26767882  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 35926459 - 35926572
Alignment:
Q  91 gttggaatttagaaaagaaattaagcagacttttgagttctgaaaattgaaacacata--tttcattccttctaacaacctttaaatacaagaaattcat 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  35926459 gttggaatttagaaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcat 35926558  T
Q  189 aatcaaaaataaac 202  Q
    ||||| ||||||||    
T  35926559 aatcagaaataaac 35926572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 35930711 - 35930824
Alignment:
Q  91 gttggaatttagaaaagaaattaagcagacttttgagttctgaaaattgaaacacata--tttcattccttctaacaacctttaaatacaagaaattcat 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  35930711 gttggaatttagaaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcat 35930810  T
Q  189 aatcaaaaataaac 202  Q
    ||||| ||||||||    
T  35930811 aatcagaaataaac 35930824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 27695009 - 27695122
Alignment:
Q  91 gttggaatttagaaaagaaattaagcagacttttgagttctgaaaattgaaacacata--tttcattccttctaacaacctttaaatacaagaaattcat 188  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  27695009 gttggaatttagaaaagaaattaagcagatttatgagttctgaaaactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcat 27695108  T
Q  189 aatcaaaaataaac 202  Q
    ||||| ||||||||    
T  27695109 aatcagaaataaac 27695122  T

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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 26708538 - 26708650
Alignment:
Q  91 gttggaatttagaaaagaaattaagcagacttttgagttctgaaaattgaa--acacatatttcattccttctaacaacctttaaatacaagaaattcat 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||  ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  26708538 gttggaatttagaaaagaaattaagcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaa-ctttaaatacaagaaattcat 26708636  T
Q  189 aatcaaaaataaac 202  Q
    ||||| ||||||||    
T  26708637 aatcagaaataaac 26708650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 26712789 - 26712901
Alignment:
Q  91 gttggaatttagaaaagaaattaagcagacttttgagttctgaaaattgaa--acacatatttcattccttctaacaacctttaaatacaagaaattcat 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||  ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  26712789 gttggaatttagaaaagaaattaagcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaa-ctttaaatacaagaaattcat 26712887  T
Q  189 aatcaaaaataaac 202  Q
    ||||| ||||||||    
T  26712888 aatcagaaataaac 26712901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 23434895 - 23435009
Alignment:
Q  91 gttggaatttagaaaagaaa-ttaagcagacttttgagttctgaaaattgaaacacata--tttcattccttctaacaacctttaaatacaagaaattca 187  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| |  ||||||||||||||||||||||||||||||||||| |||    
T  23434895 gttggaatttagaaaagaaaattaagcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaacctttaaatacaagaaactca 23434994  T
Q  188 taatcaaaaataaac 202  Q
    |||||| ||||||||    
T  23434995 taatcagaaataaac 23435009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 34632093 - 34632208
Alignment:
Q  91 gttggaatttagaaaagaaattaagcaga--cttttgagttctgaaaattgaaacacata--tttcattccttctaacaacctttaaatacaagaaattc 186  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||| ||||||||| |  ||||||||||||||| ||||||||||||||||||||||    
T  34632093 gttggaatttagaaaagaaattaagcagagacttatgagttctgaaaactgaaacacacacatttcattccttctaataacctttaaatacaagaaattc 34632192  T
Q  187 ataatcaaaaataaac 202  Q
    ||||||| ||||||||    
T  34632193 ataatcagaaataaac 34632208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 14715305 - 14715255
Alignment:
Q  148 atttcattccttctaacaacctttaaatacaagaaattcataatcaaaaat 198  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  14715305 atttcattccttctaacaacctttaaatacaggaaattcataatcagaaat 14715255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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