View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0587_low_32 (Length: 243)
Name: NF0587_low_32
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0587_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 16790236 - 16790017
Alignment:
| Q |
22 |
atttctcctacaaaggaagttacgtacaattatcccttttgaaacgtatcaaattactatacgtattagttaaaagactgcattaatttttctattagnn |
121 |
Q |
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| T |
16790236 |
atttctcctacaaaggaagttacgtacaattatcccttttgaaacgtatcaaattactatacgtattagttaaaagactgcattaatttttatattactt |
16790137 |
T |
|
| Q |
122 |
nnnnnaaaacttattcaataaatcgtttgacc-nnnnnnnncttctcatatgctacctttgttggaattgatcatattttacttcaatatctatggcctt |
220 |
Q |
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| T |
16790136 |
tttttaaaacttattcaataaatcatttgaccttttttcttcttctcatatgctacctttattggaattgatcatattttacttcaacatctatggcctt |
16790037 |
T |
|
| Q |
221 |
caacaacgaaattcaaccta |
240 |
Q |
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|||||||||||||||||||| |
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| T |
16790036 |
caacaacgaaattcaaccta |
16790017 |
T |
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