View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0587_low_34 (Length: 232)
Name: NF0587_low_34
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0587_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 12993591 - 12993730
Alignment:
| Q |
1 |
tatgacatatgaataacactcataggaaaacaacttcaaaagcgaagacaagcacaaatgtgaagactagaaatatgaacccgacccaaccaaccaatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12993591 |
tatgacatatgaataacactcataggaaaacaacttcaaaagcgaagacaagcacaaatgtgaagactagaaatatgaacccgatccaaccaaccaatat |
12993690 |
T |
|
| Q |
101 |
attatt----ataaggccacatttattctacccccctaac |
136 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
12993691 |
attattataaataaggccacatttattctacccccctaac |
12993730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 13068240 - 13068379
Alignment:
| Q |
1 |
tatgacatatgaataacactcataggaaaacaacttcaaaagcgaagacaagcacaaatgtgaagactagaaatatgaacccgacccaaccaaccaatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13068240 |
tatgacatatgaataacactcataggaaaacaacttcaaaagcgaagacaagcacaaatgtgaagactagaaatatgaacccgtcccaaccaaccaatat |
13068339 |
T |
|
| Q |
101 |
attatt----ataaggccacatttattctacccccctaac |
136 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
13068340 |
attattataaataaggccacatttattctacccccctaac |
13068379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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