View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0587_low_41 (Length: 206)
Name: NF0587_low_41
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0587_low_41 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 31320023 - 31320199
Alignment:
| Q |
14 |
aatatgaaaatggaggtatgttagcttctgttgattcaagaatagttatttttgcaggttcaacagtaggtggtggttcagctgtgaattggtcagcatg |
113 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320023 |
aatatgaaaaaggaggtatgttagcttctgttgattcaagaatagttctttttgcaggttcaacagtaggtggtggttcagctgtgaattggtcagcatg |
31320122 |
T |
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| Q |
114 |
cataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcccctctttgaaagcttagagtatc |
190 |
Q |
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| T |
31320123 |
cataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcccctctttgaaaccttagagtatc |
31320199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 31332276 - 31332452
Alignment:
| Q |
14 |
aatatgaaaatggaggtatgttagcttctgttgattcaagaatagttatttttgcaggttcaacagtaggtggtggttcagctgtgaattggtcagcatg |
113 |
Q |
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| T |
31332276 |
aatatgaaaatggagggatcctagcttctattgattcaagaatacttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttg |
31332375 |
T |
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| Q |
114 |
cataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcccctctttgaaagcttagagtatc |
190 |
Q |
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| T |
31332376 |
cattaaaacaccagaaaaggtgttgaaagaatggtcagagaaacacaaactttcactctttgatagcatagagtatc |
31332452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 3647 - 3471
Alignment:
| Q |
14 |
aatatgaaaatggaggtatgttagcttctgttgattcaagaatagttatttttgcaggttcaacagtaggtggtggttcagctgtgaattggtcagcatg |
113 |
Q |
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|||||||||||||||| || |||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
3647 |
aatatgaaaatggagggatcctagcttctattgattcaagaatacttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttg |
3548 |
T |
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| Q |
114 |
cataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcccctctttgaaagcttagagtatc |
190 |
Q |
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| T |
3547 |
cattaaaacaccagaaaaggtgttgaaagaatggtcagagaaacacaaactttcactctttgatagcatagagtatc |
3471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 33522350 - 33522292
Alignment:
| Q |
54 |
aatagttatttttgcaggttcaacagtaggtggtggttcagctgtgaattggtcagcat |
112 |
Q |
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| T |
33522350 |
aatagttcttctagcaggttcaacaattggtggtggttctgctgttaattggtcagcat |
33522292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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