View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0587_low_42 (Length: 201)
Name: NF0587_low_42
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0587_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 33860307 - 33860453
Alignment:
| Q |
22 |
acctataacatggttataaacaaaaatacatactataacatgtttagctttagtctttagtatataagattttcatctctcaattgaatttattatcact |
121 |
Q |
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| T |
33860307 |
acctataacatggttataaacaaaaatacatactataacatgtttagctttagtctttagtatataagattttcatctctcaattgaatttattatcact |
33860406 |
T |
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| Q |
122 |
tggtccaaatgaatgatgaaaattggaaatatgcaggtatgcaacag |
168 |
Q |
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| T |
33860407 |
tggtccaaatgaatgatgaaaattggaaatatgcaggtatgcaacag |
33860453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 33875288 - 33875331
Alignment:
| Q |
125 |
tccaaatgaatgatgaaaattggaaatatgcaggtatgcaacag |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33875288 |
tccaaatgaatgatgaaaattggaaatatgcaggtatgcaacag |
33875331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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