View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0587_low_6 (Length: 485)
Name: NF0587_low_6
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0587_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 137 - 472
Target Start/End: Complemental strand, 28596566 - 28596231
Alignment:
| Q |
137 |
tcactatgaaatagctaacacatatacaataaaatgaattgataataaatatttatataaacaccgtacaattgtagaaaaaggaacgcaaatgtataaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28596566 |
tcactatgaaatagctaacacatatacaataaaatgaattgataataaatctttatataaacaccgtacaattgtagaaaaaggaacgcaaatgtataaa |
28596467 |
T |
|
| Q |
237 |
agaattaatttaatgatgaaagagactaacagacaccattaatagcaattggcaaacaaatgatgcatgctgatgaagaaagaattttgtaaaattaatt |
336 |
Q |
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| T |
28596466 |
agaattaatttaatgatgaaagagactaacagacaccattaatagcaattggcaaacaaatgatgcatgctgatgaagaaagaattttgtaaaattaatt |
28596367 |
T |
|
| Q |
337 |
gatagcactgcatatacttcttataattccagcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagtcagacttaaaagtt |
436 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28596366 |
gatagcactgcatatacttcttatgattccagcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagtcagacttaaaagtt |
28596267 |
T |
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| Q |
437 |
gtaggattgttgctgtattcagaaacgatagaatct |
472 |
Q |
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| T |
28596266 |
gtaggatttttgctgtattcagaaacgatagaatct |
28596231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 155 - 472
Target Start/End: Complemental strand, 32494771 - 32494451
Alignment:
| Q |
155 |
cacatatacaataaaatgaattgataataaatatttatataaacaccgtacaattgtagaaaaaggaacgcaaatgtataaaagaatt---aatttaatg |
251 |
Q |
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|||| ||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||| |
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| T |
32494771 |
cacaaatacaataaaatgaattgatagtaaataattctataaacaccgtacaattgtagaaacaggaacgaaaatgtattaaagaatttgcaatttaatg |
32494672 |
T |
|
| Q |
252 |
atgaaagagactaacagacaccattaatagcaattggcaaacaaatgatgcatgctgatgaagaaagaattttgtaaaattaattgatagcactgcatat |
351 |
Q |
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| T |
32494671 |
atgaaagagactacatggcaccatcaatagcaattggcaaacgaatgatgcattctgatgaagaaaaaaatttgcaaaatcaattgatagcactgcatat |
32494572 |
T |
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| Q |
352 |
acttcttataattccagcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagtcagacttaaaagttgtaggattgttgctg |
451 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||| |
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| T |
32494571 |
acttcttatgattccagcagatccggttaagggttggatatctcccatctttatcatagcagcagcaaagtctgacttaaaagtagtaggatttttgctg |
32494472 |
T |
|
| Q |
452 |
tattcagaaacgatagaatct |
472 |
Q |
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||||||||||||||||||||| |
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| T |
32494471 |
tattcagaaacgatagaatct |
32494451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 330 - 472
Target Start/End: Original strand, 28591603 - 28591745
Alignment:
| Q |
330 |
attaattgatagcactgcatatacttcttataattccagcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagtcagactt |
429 |
Q |
| |
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|||| |||| ||||||||| || |||||||| || ||||| || || || ||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
28591603 |
attagttgacagcactgcagatgcttcttatgataccagccgacccagtcaagggttcaatatctcccatctttatcatagcagctgcaaagtcagactt |
28591702 |
T |
|
| Q |
430 |
aaaagttgtaggattgttgctgtattcagaaacgatagaatct |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28591703 |
aaaagttgtaggattgttgctgtattcagaaacgatagaatct |
28591745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 323 - 462
Target Start/End: Original strand, 28586508 - 28586647
Alignment:
| Q |
323 |
ttgtaaaattaattgatagcactgcatatacttcttataattccagcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagt |
422 |
Q |
| |
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||||| ||||| |||| ||||||||||| |||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
28586508 |
ttgtataattagttgactgcactgcatatgcttcttatgactccagccgatccggttaagggttcaatatctcccatctttatcatagcagttgcaaagt |
28586607 |
T |
|
| Q |
423 |
cagacttaaaagttgtaggattgttgctgtattcagaaac |
462 |
Q |
| |
|
| || || |||||||||||||||||||||||||| ||||| |
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| T |
28586608 |
cggatttgaaagttgtaggattgttgctgtattctgaaac |
28586647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 28596689 - 28596630
Alignment:
| Q |
66 |
tttgcgcaagcaatttcatgacttcatactcaagatggaatgttcaatttagaggagaaa |
125 |
Q |
| |
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| T |
28596689 |
tttgcgcaagcaatttcatgacttcgtactcaagatggaatgttcaatttagaggagaaa |
28596630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 32494856 - 32494810
Alignment:
| Q |
70 |
cgcaagcaatttcatgacttcatactcaagatggaatgttcaattta |
116 |
Q |
| |
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| T |
32494856 |
cgcaagcaatttcatgacttcgagttcaagatggaatgttcaattta |
32494810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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