View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0587_low_9 (Length: 426)

Name: NF0587_low_9
Description: NF0587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0587_low_9
NF0587_low_9
[»] chr5 (13 HSPs)
chr5 (89-417)||(39470312-39470639)
chr5 (65-417)||(39457848-39458200)
chr5 (92-417)||(39464110-39464434)
chr5 (92-249)||(39486761-39486917)
chr5 (65-190)||(39472299-39472424)
chr5 (82-190)||(43312315-43312423)
chr5 (92-411)||(39451296-39451614)
chr5 (92-187)||(39460543-39460638)
chr5 (92-191)||(39475802-39475901)
chr5 (92-191)||(39483553-39483652)
chr5 (72-190)||(39454909-39455027)
chr5 (356-412)||(39472589-39472645)
chr5 (359-417)||(39460809-39460867)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 89 - 417
Target Start/End: Complemental strand, 39470639 - 39470312
Alignment:
Q  89 tcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggttt 188  Q
    |||||||||||||||||||||| | ||||||||||||||  ||||||||||   ||||| || | || || |||||||||||  ||||||||||||||||    
T  39470639 tcattgttgacatgttctgcacaaacatgattgatgttgccaaagaattttccctccctgcgtttgtgttgttcacttccggcattgctttccttggttt 39470540  T
Q  189 gaaatctctatattcaatatctgtttgaacgagacagcatcgattcgactcagttgatgcaactcacagagctgtccattccgagttttgctaatccggt 288  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  39470539 gaa-tctctatattcaatatctgtttgaacgagacagcaccgattcgactcagttgatgcaactcacagagctgcccattccgagttttgctaatccgtt 39470441  T
Q  289 tccttcaatctcgttgcccagttcagtgctacgcaaggaatacaaatccgtcttcacgagtttcgccaaaggcctcaagaatgctgatggcattattgtc 388  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  39470440 tcctttaaactcgttgcccagttcagtgctacacaaggaatacaaatccgtcttcatgagcttcgccaaaggcctcaagaatgccgatggcattattgtc 39470341  T
Q  389 aattcatttgaagagctagaatcctatgc 417  Q
    |||||||||||||||||||||||||||||    
T  39470340 aattcatttgaagagctagaatcctatgc 39470312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 65 - 417
Target Start/End: Complemental strand, 39458200 - 39457848
Alignment:
Q  65 cagagaatggagtcctagctgcattcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcac 164  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39458200 cagaaaatggagtcctagctgcattcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttctgtccctacgctcgtcttcttcac 39458101  T
Q  165 ttccggtgttgctttccttggtttgaaatctctatattcaatatctgtttgaacgagacagcatcgattcgactcagttgatgcaactcacagagctgtc 264  Q
    |||||||||||||||||||||||||||||||  |||||||  || ||||||||||||||| | | ||||| ||||||||| |||| |  || ||| || |    
T  39458100 ttccggtgttgctttccttggtttgaaatcttcatattcataatatgtttgaacgagacaacgttgattccactcagttgctgcagcagactgagttggc 39458001  T
Q  265 cattccga-gttttgctaatccggttccttcaatctcgttgcccagttcagtgctacgcaaggaatacaaatccgtcttcacgagtttcgccaaaggcct 363  Q
    || ||||| |||| |||||  | |||||||||| | | ||||||||||||||||||||||||||||   | ||| |||||| ||| |  || ||||| ||    
T  39458000 ca-tccgaggtttcgctaactcagttccttcaaacactttgcccagttcagtgctacgcaaggaatgggagtccttcttcatgagctatgcgaaaggtct 39457902  T
Q  364 caagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatgc 417  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  39457901 caagaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgc 39457848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 92 - 417
Target Start/End: Complemental strand, 39464434 - 39464110
Alignment:
Q  92 ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaa 191  Q
    ||||||||||||||||||||| ||||||||||||||  || |||||||  |||||| || | || |||||||||||  |||||||||||||||||||| |    
T  39464434 ttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttggtttg-a 39464336  T
Q  192 atctctatattcaatatctgtttgaacgagacagcatcgattcgactcagttgatgcaactcacagagctgtccattccgagttttgctaatccggttcc 291  Q
    ||||  |||||||   | ||||||||||||||| | ||||||| |||||| ||  |||||| || ||  ||||| | |||||||| |||||  | |||||    
T  39464335 atcttcatattcacactttgtttgaacgagacaacgtcgattcaactcagctggagcaactgactgaattgtccctcccgagtttcgctaactccgttcc 39464236  T
Q  292 ttcaatctcgttgcccagttcagtgctacgcaaggaatacaaatccgtcttcacgagtttcgccaaaggcctcaagaatgctgatggcattattgtcaat 391  Q
    | |||  |||||||||||| ||||  |||||||||||| | | ||  | |||| ||| |  || |||||||||||||| ||||||||  |||| || |||    
T  39464235 tacaaaatcgttgcccagtgcagtaatacgcaaggaatccgagtcgtttttcatgagctatgcaaaaggcctcaagaaggctgatggttttatagtaaat 39464136  T
Q  392 tcatttgaagagctagaatcctatgc 417  Q
    ||||||||||||||||||||| ||||    
T  39464135 tcatttgaagagctagaatcccatgc 39464110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 92 - 249
Target Start/End: Original strand, 39486761 - 39486917
Alignment:
Q  92 ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaa 191  Q
    |||||||||||||||||||||||||||||||| |||  ||||||||||   ||||| ||||| ||||||||||||||||||||||||| ||||||||| |    
T  39486761 ttgttgacatgttctgcaccaccatgattgatattgccaaagaattttccatccctgcgctcatcttcttcacttccggtgttgcttttcttggtttg-a 39486859  T
Q  192 atctctatattcaatatctgtttgaacgagacagcatcgattcgactcagttgatgca 249  Q
      ||| || ||||   ||||||||||||||||| ||||||||| ||||||||| ||||    
T  39486860 tgctccatcttcacactctgtttgaacgagacaacatcgattcaactcagttgctgca 39486917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 65 - 190
Target Start/End: Original strand, 39472299 - 39472424
Alignment:
Q  65 cagagaatggagtcctagctgcattcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcac 164  Q
    |||| ||||||||||| || || ||  ||||||||||||||||||| | ||||||||||||||  ||||| || | |||||||||||| |||||||||||    
T  39472299 cagaaaatggagtccttgccgcttttgttgttgacatgttctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcac 39472398  T
Q  165 ttccggtgttgctttccttggtttga 190  Q
    |||||||||||| |||||||| ||||    
T  39472399 ttccggtgttgcgttccttggattga 39472424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 82 - 190
Target Start/End: Complemental strand, 43312423 - 43312315
Alignment:
Q  82 gctgcattcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttcc 181  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| |  || || |||  ||||||| | ||||||| |||||||||||||||||||||||    
T  43312423 gctgccttcgttgttgacatgttctgcaccaccatgattgatgtagctaatgactttggtgtcccttccctcgtctacttcacttccggtgttgctttcc 43312324  T
Q  182 ttggtttga 190  Q
    |||||||||    
T  43312323 ttggtttga 43312315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 411
Target Start/End: Original strand, 39451296 - 39451614
Alignment:
Q  92 ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaa 191  Q
    |||||||||||||||||||||||||||||||| |||  ||||||||||  || |||| |||||||||||||||||| || ||||||| ||||||||||||    
T  39451296 ttgttgacatgttctgcaccaccatgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaa 39451395  T
Q  192 atctctatattcaatatctgtttgaacgagacagcatcgattcgactcagttgatgcaactcacagagctgtccattccgagttttgctaatccggttcc 291  Q
     |||  |||||||    ||   ||||||||||| | | ||||| |||||||||  ||| |  | |||| |  |||| |||| ||| ||| |   | ||||    
T  39451396 -tcttcatattcataccctccgtgaacgagacaacgttgattcaactcagttgcagcagcagaaagagttagccatcccgactttcgctcacttgtttcc 39451494  T
Q  292 ttcaatctcgttgcccagttcagtgctacgcaaggaatacaaatccgtcttcacgagtttcgccaaaggcctcaagaatgctgatggcattattgtcaat 391  Q
    ||||| ||| |||||  |||| || ||| |||||||||   || |  | |||| ||| |||    |||||||||||||||| ||||||||||| || |||    
T  39451495 ttcaagctcattgcctggttccgtcctaagcaaggaatgggaaccgtttttcatgagcttcatagaaggcctcaagaatgccgatggcattatagtaaat 39451594  T
Q  392 tcatttgaagagctagaatc 411  Q
    ||||||||||||||||||||    
T  39451595 tcatttgaagagctagaatc 39451614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 39460543 - 39460638
Alignment:
Q  92 ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggtt 187  Q
    ||||||||||||||||||| |  ||||||||| |||  ||||||||||  ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  39460543 ttgttgacatgttctgcactaaaatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttggtt 39460638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 39475802 - 39475901
Alignment:
Q  92 ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaa 191  Q
    ||||||||||||||||||||||||||||  ||||||  || || ||   ||||||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  39475802 ttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttggtttgaa 39475901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 39483553 - 39483652
Alignment:
Q  92 ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaa 191  Q
    ||||||||||||||||||||||||||||||||||||  || || ||   ||||||||||||||| |||| ||||| | ||||||||| ||||||||||||    
T  39483553 ttgttgacatgttctgcaccaccatgattgatgttgccaatgagttcaatgtccctacgctcgttttctacactttcagtgttgcttcccttggtttgaa 39483652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 39454909 - 39455027
Alignment:
Q  72 tggagtcctagctgcattcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggt 171  Q
    ||||||||| || || ||| |||||||||||| ||||||  |||||||||||||||  ||||| || |   ||||||| |||||||||||||||||| ||    
T  39454909 tggagtcctcgcagctttcgttgttgacatgtcctgcacagccatgattgatgttgccaaagagttctccatccctacactcgtcttcttcacttccagt 39455008  T
Q  172 gttgctttccttggtttga 190  Q
    || ||||||||||||||||    
T  39455009 gtagctttccttggtttga 39455027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 39472589 - 39472645
Alignment:
Q  356 aaaggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcc 412  Q
    |||||||||||||| ||||||||| |||| || ||||||||||||||||||||||||    
T  39472589 aaaggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcc 39472645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 417
Target Start/End: Original strand, 39460809 - 39460867
Alignment:
Q  359 ggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatgc 417  Q
    ||||||||||| ||  |||| ||||| || |||||||||||||||||||||||| ||||    
T  39460809 ggcctcaagaaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgc 39460867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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