View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589-Insertion-1 (Length: 514)
Name: NF0589-Insertion-1
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 112 - 321
Target Start/End: Complemental strand, 22323501 - 22323293
Alignment:
| Q |
112 |
gatgcgacaaaatgcacttatcaaattcctttactcttaaatttttgcactccgagcaaaacttaagttcaagactcaaagccagattcaaaaggaccaa |
211 |
Q |
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|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22323501 |
gatgtgacaaaatgcacttatcaaattcctccacgcttaaatttttgcactccgagcaaaacataagttcaagactcaaagccagattcaaaaggaccaa |
22323402 |
T |
|
| Q |
212 |
aataaagcatgatttaattccaaagaatgccaagagtttaaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataacatc |
311 |
Q |
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|||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22323401 |
aataaaccatga-ttaattccaaagaatgccaagggtttaaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataaaatc |
22323303 |
T |
|
| Q |
312 |
ttatggtatt |
321 |
Q |
| |
|
|||||||||| |
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|
| T |
22323302 |
ttatggtatt |
22323293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 112 - 321
Target Start/End: Complemental strand, 22338560 - 22338352
Alignment:
| Q |
112 |
gatgcgacaaaatgcacttatcaaattcctttactcttaaatttttgcactccgagcaaaacttaagttcaagactcaaagccagattcaaaaggaccaa |
211 |
Q |
| |
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|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22338560 |
gatgtgacaaaatgcacttatcaaattcctccacgcttaaatttttgcactccgagcaaaacataagttcaagactcaaagccagattcaaaaggaccaa |
22338461 |
T |
|
| Q |
212 |
aataaagcatgatttaattccaaagaatgccaagagtttaaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataacatc |
311 |
Q |
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|||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22338460 |
aataaaccatga-ttaattccaaagaatgccaagggtttaaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataaaatc |
22338362 |
T |
|
| Q |
312 |
ttatggtatt |
321 |
Q |
| |
|
|||||||||| |
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|
| T |
22338361 |
ttatggtatt |
22338352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 317 - 514
Target Start/End: Complemental strand, 22319435 - 22319238
Alignment:
| Q |
317 |
gtattggcttgaaaaatctctagcatctacacttgaaactcatgcacgtaaagatcnnnnnnntttattgaggttgtaacgaagccaaggtaaatatgag |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
22319435 |
gtattggcttgaaaaatctctagcatctacacttgaaactcatgcacgtaaagatcaaaagtttttattgaggttgtaacgaggccaaggtaaatatgag |
22319336 |
T |
|
| Q |
417 |
ataaccctaataagggggattagactgtaaagttaaagaggataaagaataagaacaataaaaatcacttggttattaagcatgagagatatttaaac |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
22319335 |
ataaccctaataagggggattagactgtaaagttaaagaggataaagaataagaacaataaaaatcacttggatattaagcatgagagatatttaaac |
22319238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 22806479 - 22806543
Alignment:
| Q |
251 |
aaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataacatcttat |
315 |
Q |
| |
|
|||||| |||||||||| ||||||| ||| |||||||| |||| ||||||||||||||||||||| |
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|
| T |
22806479 |
aaagttacaagaaattagcacattccaggattcaaggagcatggcaatcatgaataacatcttat |
22806543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 28813653 - 28813588
Alignment:
| Q |
251 |
aaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataacatcttatg |
316 |
Q |
| |
|
|||| |||||| ||||| ||||||||| | |||||||| ||| |||||||||||||||||||||| |
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|
| T |
28813653 |
aaagctgcaagcaattagcacattctaagattcaaggagtatgccaatcatgaataacatcttatg |
28813588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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