View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589-Insertion-2 (Length: 556)
Name: NF0589-Insertion-2
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589-Insertion-2 |
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| [»] scaffold0171 (2 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 8 - 538
Target Start/End: Original strand, 24939978 - 24940507
Alignment:
| Q |
8 |
taatgtgtcagattttatttggttttgtaagaatttggatttttatggaatgaataaaaggcttaaaagaattagggacaggtttgacacaatgatggag |
107 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24939978 |
taatgtgtcggattttatttggttttgtaagaatttggatttttatggaatgaataaaaggcttaaaagaattagggacaggtttgacaaaatgatggag |
24940077 |
T |
|
| Q |
108 |
agagtgacaaaagagcatctagaggaaaagaagaaaagaggtgaaggtgctcatcctgttagggatctacttgatatattgttggaaatacaagaagatg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24940078 |
agagtgacaaaagagcatctagaggaaaagaagaaaagaggtgaaggtgctcatcatgttagggatctacttgatatattgttggaaatacaagaagatg |
24940177 |
T |
|
| Q |
208 |
agagcaatgaaatcaaattgaccagtgagaatgtcaaggctttcatcttggtaagtcatctaaattccatattattcattaaaaatatagcgaacgtaat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | ||| |
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| T |
24940178 |
agagcaatgaaatcaaattgaccagtgagaatgtcaaggctttcatcttggtaagtcatctaaattccatattattcgttaaaaa-atagcgaatgcaat |
24940276 |
T |
|
| Q |
308 |
acaattagaaatccagaattgcgacgttttaagtcacgttacttaagaatgaaatttagaatagcgcatagatgcaggaacgattgcggttgtactgcaa |
407 |
Q |
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||||||| ||||| |||||| ||||||| |||||| |||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
24940277 |
acaattaaaaatcaagaattatgacgtttcaagtcatgttacttaagaacgaagtttagaatagcgcgtagttgcaggaacgattgcggttgtactgcaa |
24940376 |
T |
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| Q |
408 |
ttttttaatattacgaagaatcccagtcaaatgtgaatatgatcgatttggtcaagcataaattgctcttgtgttgtgattcaactaatttctcagtatt |
507 |
Q |
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| T |
24940377 |
tttttgaatattatgaagaatcacagtcaaatatgaatatgatcgatttggccaagcataaattgctcttttgttgtgattcaactaatttctgagtatt |
24940476 |
T |
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| Q |
508 |
gcattttgttcaatgtacatattatatactt |
538 |
Q |
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| T |
24940477 |
gcattttgttcaatgtacatattatatactt |
24940507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 25168598 - 25168857
Alignment:
| Q |
9 |
aatgtgtcagattttatttggttttgtaagaatttggatttttatggaatgaataaaaggcttaaaagaattagggacaggtttgacacaatgatggaga |
108 |
Q |
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|||||||| |||||||| ||||||| ||||||| | |||||||||||||||||||||| ||| ||||| ||| |||| |||||||||||||||||||| | |
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| T |
25168598 |
aatgtgtcggattttatctggttttttaagaatatagatttttatggaatgaataaaaagctgaaaaggattcgggataggtttgacacaatgatggata |
25168697 |
T |
|
| Q |
109 |
gagtgacaaaagagcatctagaggaaaagaagaaaagaggtgaaggtgctcatcctgttagggatctacttgatatattgttggaaatacaagaagatga |
208 |
Q |
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| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| ||||| |
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| T |
25168698 |
gggtgacaaaggagcatcaagaggaaaagaagaaaagaggtgaaggtgctcatcatgttagggatttacttgatattttgttggaaatacaagaggatga |
25168797 |
T |
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| Q |
209 |
gagcaatgaaatcaaattgaccagtgagaatgtcaaggctttcatcttggtaagtcatct |
268 |
Q |
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| T |
25168798 |
gagcaatgaaatcaaattgactagtgagaatgtcaacgcgttcatcttggtaagtcatct |
25168857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 38808639 - 38808541
Alignment:
| Q |
164 |
tgttagggatctacttgatatattg-ttggaaatacaagaagatgagagcaatgaaatcaaattgaccagtgagaatgtcaaggctttcatcttggtaag |
262 |
Q |
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|||||||||||| |||||||| ||| |||||||||| | | |||||||||| | | || ||||| ||||| |||||||||||| ||||||||| ||||| |
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| T |
38808639 |
tgttagggatctgcttgatattttggttggaaatactataggatgagagcact-agataaaattaaccagagagaatgtcaagtatttcatctttgtaag |
38808541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 24423 - 24683
Alignment:
| Q |
8 |
taatgtgtcagattttatttggttttgtaagaatttggatttttatggaatgaataaaaggcttaaaagaa-ttagggacaggtttgacacaatgatgga |
106 |
Q |
| |
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|||| |||| |||||||||||||||| |||||||| |||||| | ||| | || |||||||| |||||| ||| | ||| ||| ||||||||||| || |
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| T |
24423 |
taatttgtcggattttatttggttttttaagaattgggatttgcaaggatttaacaaaaggct-aaaagagcttatgaacatgttcgacacaatgattga |
24521 |
T |
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| Q |
107 |
gagagtgacaaaagagcatctagaggaaaagaagaaaaga---------ggtgaaggtgctcatcctgttagggatctacttgatatattgttggaaata |
197 |
Q |
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||| || | || ||||||| |||||||| |||||||||| || |||||||||||| |||| |||| | |||||||| ||||||||||| |
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| T |
24522 |
gagtgtcataagggagcatcaagaggaaatgaagaaaagaaaggaaaatggcgaaggtgctcat---gttaaggatttgcttgatattttgttggaaatt |
24618 |
T |
|
| Q |
198 |
caagaagatgagagcaatgaaatcaaattgaccagtgagaatgtcaaggctttcatcttggtaag |
262 |
Q |
| |
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|| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||| ||||| |
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| T |
24619 |
catgaagatgagagcagtgaaataaaattgaccagaaagaatgtcaaggctttcatctttgtaag |
24683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 19014 - 19274
Alignment:
| Q |
8 |
taatgtgtcagattttatttggttttgtaagaatttggatttttatggaatgaataaaaggcttaaaagaattagggacaggtttgacacaatgatggag |
107 |
Q |
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|||| |||| |||||||||||||||| |||||||| |||| | | ||| | || |||||||||||| ||| ||| |||||||||||| |||||||| |
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| T |
19014 |
taatttgtcggattttatttggttttttaagaattgggatatgcaaggatttaacaaaaggcttaaagtggttatggagaggtttgacacattgatggag |
19113 |
T |
|
| Q |
108 |
agagtgacaaaagagcatctagaggaaaagaagaaaaga---------ggtgaaggtgctcatcctgttagggatctacttgatatattgttggaaatac |
198 |
Q |
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|| |||| || ||||||| || ||||| ||||||||| |||||||||| |||| |||||||||||||||||||| ||||| ||||| | |
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| T |
19114 |
agggtgataagggagcatcaagtggaaatgaagaaaaggaaagaaaagggtgaaggtgatcat---gttagggatctacttgatattttgttagaaatgc |
19210 |
T |
|
| Q |
199 |
aagaagatgagagcaatgaaatcaaattgaccagtgagaatgtcaaggctttcatcttggtaag |
262 |
Q |
| |
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| || |||||| || ||||| |||||||| || ||||||||||| ||||| ||||||||||| |
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| T |
19211 |
atgagaatgagaacacagaaataaaattgacaagagagaatgtcaaagctttaatcttggtaag |
19274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 11290 - 11051
Alignment:
| Q |
8 |
taatgtgtcagattttatttggttttgtaagaatttggatttttatggaatgaataaaaggcttaaaagaattagggacaggtttgacacaatgatggag |
107 |
Q |
| |
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|||||||||||||||||||||| |||| |||||||||||||| | ||||| |||||||||||||| || ||| |||||||||| |||| ||||| |
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| T |
11290 |
taatgtgtcagattttatttgggtttgcaagaatttggatttacaaggaatacataaaaggcttaaagttgctatggaaaggtttgacataatgttggag |
11191 |
T |
|
| Q |
108 |
agagtgacaaaagagcatctagaggaaaagaagaaaagaggtgaaggtgctcatcctgttagggatctacttgatatattgttggaaatacaagaagatg |
207 |
Q |
| |
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|| | | || || |||| |||| ||| ||| || |||||||||||||| || ||||||| |||||||||| |||||||||| || || ||| |
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|
| T |
11190 |
agggccataagggaacatcaagagaaaagaaaggtaaagggtgaaggtgctca---tgatagggatatacttgatattttgttggaaaaacttgaggata |
11094 |
T |
|
| Q |
208 |
agagcaatgaaatcaaattgaccagtgagaatgtcaaggcttt |
250 |
Q |
| |
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||||| ||||||| | ||||||||| |||||| |||||||||| |
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| T |
11093 |
agagctatgaaataacattgaccagagagaatatcaaggcttt |
11051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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