View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589-Insertion-3 (Length: 424)
Name: NF0589-Insertion-3
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589-Insertion-3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 7 - 424
Target Start/End: Complemental strand, 45659249 - 45658831
Alignment:
| Q |
7 |
aagctaaccatgtttgccacaaaacccatgttgtccaatgctgacaatactacatcaaaaaacaagaacatattttgcatcaaa-ttcaaatcagcaaaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
45659249 |
aagctaaccatgtttgccacaaaacccatgttgtccaatgctgacaatactacatcaaaaaacaagaacatagtttgcatcaaaattcaaatcagcaaaa |
45659150 |
T |
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| Q |
106 |
aacagaaccaacaaagagtttttgtttatacttcggcttaccaaaaataaacatagaagccctgaatccacctttctttctcttccattcagtgagaagc |
205 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45659149 |
aacagaaccaacaaagagtttttgtttatacttcagcttaccaaaaataaacatagaagccctaaatccacctttctttctcttccattcagtgagaagc |
45659050 |
T |
|
| Q |
206 |
ttgagttcttcagtttcctcttgatctgcctgtattacaaagatttgaaactcatcaactatatgtatatagaaacaagctaaggttagaaaaatgagtg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45659049 |
ttgagttcttcagtttcctcttgatctgcctgtattacaaagatttgaaactcatcaactatatgtatatagaaacaagctaaggttagaaaaatgagtg |
45658950 |
T |
|
| Q |
306 |
agatgaatgagtagaaccttaccattgtctcgataatgagagttaagttttagacaagaatagtaaagttcaaatgaaatggtgtttgtgaagaaatagc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45658949 |
agatgaatgagtagaaccttaccattgtctcgataatgagagttaagttttagacaagaatagtaaagttcaaatgaaatggtgtttgtgaagaaatagc |
45658850 |
T |
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| Q |
406 |
tcaaaattgttcgcctctg |
424 |
Q |
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| T |
45658849 |
tcaaaattgtttgcctctg |
45658831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 37984292 - 37984345
Alignment:
| Q |
7 |
aagctaaccatgtttgccacaaaacccatgttgtccaatgctgacaatactaca |
60 |
Q |
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||||| |||||||||| ||||||||||||||| |||||||||||||| |||||| |
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| T |
37984292 |
aagctcaccatgtttgtcacaaaacccatgttatccaatgctgacaaaactaca |
37984345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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