View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0589-Insertion-4 (Length: 407)
Name: NF0589-Insertion-4
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589-Insertion-4 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 22443945 - 22443832
Alignment:
| Q |
294 |
attgacagcttcctcttgtacgtcaaaatttaaaaagaaaaattgaatttccgatcacactgttggactttgtgctatataagttttgaaggactaatag |
393 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22443945 |
attgacagcttcctcttgtatgacaaaatttaaaaataaaaaatgaatttcagatcacactgttggactttatgctatataagttttgaaggactaatag |
22443846 |
T |
|
| Q |
394 |
cttttatcatatca |
407 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
22443845 |
ctttttccatatca |
22443832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 267 - 407
Target Start/End: Complemental strand, 22469155 - 22469011
Alignment:
| Q |
267 |
aacactaacagcaagttgaagcacatgattgacagcttcctc----ttgtacgtcaaaatttaaaaagaaaaattgaatttccgatcacactgttggact |
362 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| ||| ||| ||||||| ||||||| | | ||||||| | |||||||||||||||| |
|
|
| T |
22469155 |
aacactaacagctaattgaagcacatgattgacagcttcctcaaagttgcacgacaaaattgaaaaagagagaatgaattttctatcacactgttggact |
22469056 |
T |
|
| Q |
363 |
ttgtgctatataagttttgaaggactaatagcttttatcatatca |
407 |
Q |
| |
|
|| |||||||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
22469055 |
ttatgctatataaattttgaaggactgatagctttttccatatca |
22469011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 22469336 - 22469237
Alignment:
| Q |
96 |
tctctttaaaaaatacattgtaaagtcaacgatatcaattacctaaatccaacttgcaatgtacataaaataatggccatgtgattgagaattaagaaac |
195 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| |||| |||||||||||||||||| || ||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
22469336 |
tctctttaaaaaatatgttgttaagtcaacgatatgaattttctaaatccaacttgcaatatatataaaataatgtccatgtgattgtgaattatgaaac |
22469237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2081 times since January 2019
Visitors: 3811