View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0589-Insertion-8 (Length: 114)

Name: NF0589-Insertion-8
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0589-Insertion-8
NF0589-Insertion-8
[»] chr2 (4 HSPs)
chr2 (29-113)||(5862609-5862693)
chr2 (29-99)||(19937117-19937187)
chr2 (48-94)||(30759645-30759691)
chr2 (29-75)||(44085510-44085556)
[»] chr3 (11 HSPs)
chr3 (29-95)||(2832390-2832456)
chr3 (29-86)||(10481650-10481707)
chr3 (33-86)||(26291961-26292014)
chr3 (29-99)||(4669639-4669709)
chr3 (29-95)||(8557954-8558020)
chr3 (29-95)||(20846492-20846557)
chr3 (29-95)||(26758244-26758310)
chr3 (29-99)||(55467639-55467704)
chr3 (29-86)||(54122041-54122098)
chr3 (70-98)||(45629249-45629277)
chr3 (29-72)||(45699637-45699680)
[»] chr5 (4 HSPs)
chr5 (29-113)||(41454884-41454968)
chr5 (29-95)||(27572041-27572107)
chr5 (29-79)||(40692515-40692564)
chr5 (31-75)||(36760136-36760180)
[»] chr4 (9 HSPs)
chr4 (29-113)||(20986442-20986526)
chr4 (32-99)||(23625893-23625960)
chr4 (31-94)||(29335116-29335179)
chr4 (65-113)||(6333368-6333416)
chr4 (54-98)||(27743243-27743287)
chr4 (48-99)||(8484705-8484756)
chr4 (48-99)||(21069085-21069136)
chr4 (29-76)||(36106434-36106481)
chr4 (29-80)||(48338361-48338412)
[»] chr7 (17 HSPs)
chr7 (27-98)||(7697302-7697373)
chr7 (29-87)||(2308119-2308177)
chr7 (33-80)||(10338822-10338869)
chr7 (32-99)||(23032697-23032764)
chr7 (29-86)||(11834504-11834561)
chr7 (27-76)||(34751006-34751055)
chr7 (33-76)||(30855112-30855155)
chr7 (29-76)||(43202449-43202496)
chr7 (29-99)||(3213214-3213284)
chr7 (29-75)||(8118296-8118342)
chr7 (29-75)||(21237792-21237838)
chr7 (27-81)||(47646730-47646784)
chr7 (29-95)||(48642800-48642866)
chr7 (30-99)||(4153719-4153788)
chr7 (31-95)||(30079588-30079652)
chr7 (29-113)||(40848871-40848955)
chr7 (29-76)||(46147236-46147283)
[»] chr6 (3 HSPs)
chr6 (29-99)||(19135104-19135174)
chr6 (29-96)||(22413858-22413925)
chr6 (48-99)||(7170089-7170140)
[»] chr1 (8 HSPs)
chr1 (30-100)||(23475103-23475173)
chr1 (48-95)||(39158319-39158366)
chr1 (29-99)||(11074391-11074461)
chr1 (29-99)||(12973580-12973650)
chr1 (30-113)||(11899027-11899110)
chr1 (48-99)||(26345050-26345101)
chr1 (29-95)||(8165547-8165613)
chr1 (33-99)||(36782371-36782437)
[»] chr8 (2 HSPs)
chr8 (29-112)||(11218970-11219053)
chr8 (29-98)||(24682084-24682152)
[»] scaffold0664 (1 HSPs)
scaffold0664 (27-112)||(6014-6099)
[»] scaffold0204 (1 HSPs)
scaffold0204 (29-80)||(25883-25934)


Alignment Details
Target: chr2 (Bit Score: 57; Significance: 3e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 5862693 - 5862609
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattgagtctgtttgtgcg 113  Q
    ||||||||||||| | || ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  5862693 ttggtttggttcggttgacttttaaaataaaatccgaaccaaaccaaatcaaaccaatacggtttggattgaatcggtttgtgcg 5862609  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 19937187 - 19937117
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    ||||||||||||||| |||||||||||    |||  |||||||||||| ||||||||| ||||||||||||    
T  19937187 ttggtttggttcgattgatttttaaaaagtcatccaaatcaaaccaaagcaaaccaatgcggtttggattg 19937117  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 30759691 - 30759645
Alignment:
Q  48 ttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttg 94  Q
    |||||||||||||| |||| ||||||||| ||||||||| |||||||    
T  30759691 ttttaaaataaaatttgaaccaaaccaaaccaaaccaatgcggtttg 30759645  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 44085510 - 44085556
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaa 75  Q
    ||||||||||||| | || ||| ||||||||||||||||||||||||    
T  44085510 ttggtttggttcggttgactttaaaaataaaatctgaatcaaaccaa 44085556  T

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Target: chr3 (Bit Score: 47; Significance: 3e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 2832456 - 2832390
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttgg 95  Q
    ||||||||||||| | || ||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  2832456 ttggtttggttcggttgacttttaaaataaaatccgaatcaaaccaaatcaaaccaatgcggtttgg 2832390  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 10481707 - 10481650
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaat 86  Q
    ||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||    
T  10481707 ttggtttggttcggttgacttttaaaataaaatttgaatcaaaccaaatcaaaccaat 10481650  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 26292014 - 26291961
Alignment:
Q  33 tttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaat 86  Q
    ||||||||| | ||||||||||||| |||||||| |||||||||||||||||||    
T  26292014 tttggttcggttgatttttaaaatagaatctgaaccaaaccaaatcaaaccaat 26291961  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 4669709 - 4669639
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    ||||||||||||| | |||||||||||    ||| ||| ||||||||| ||||||||| ||||||||||||    
T  4669709 ttggtttggttcggttgatttttaaaaagtcatccgaaccaaaccaaaccaaaccaatgcggtttggattg 4669639  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 8558020 - 8557954
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttgg 95  Q
    |||||| |||| ||| || ||| ||||||||||| ||| ||||||||| ||||||||| ||||||||    
T  8558020 ttggttcggtttgattgactttaaaaataaaatccgaaccaaaccaaaccaaaccaatgcggtttgg 8557954  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 20846492 - 20846557
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttgg 95  Q
    ||||||||||||| | || |||||||||||||||  || | ||||||||||||||||| ||||||||    
T  20846492 ttggtttggttcggttgacttttaaaataaaatc-caaaccaaccaaatcaaaccaatgcggtttgg 20846557  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 26758244 - 26758310
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttgg 95  Q
    ||||||||||||| | || |||||||||||| |||||  |||||||||  |||||||| ||||||||    
T  26758244 ttggtttggttcggttgacttttaaaataaagtctgatccaaaccaaactaaaccaatgcggtttgg 26758310  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 55467704 - 55467639
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    ||||||||||||| | || |||||||||||||||     | ||||||||||||||||| ||||||||||||    
T  55467704 ttggtttggttcggttgacttttaaaataaaatc-----cgaaccaaatcaaaccaatgcggtttggattg 55467639  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 54122041 - 54122098
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaat 86  Q
    ||||||||||||| | || ||||||||||||||| ||| ||||||||| |||| ||||    
T  54122041 ttggtttggttcggttgacttttaaaataaaatccgaaccaaaccaaaccaaaacaat 54122098  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 45629249 - 45629277
Alignment:
Q  70 aaccaaatcaaaccaatacggtttggatt 98  Q
    |||||||||||||||||||||||||||||    
T  45629249 aaccaaatcaaaccaatacggtttggatt 45629277  T

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Target: chr3; HSP #11
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 45699637 - 45699680
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaac 72  Q
    ||||||| ||||||| || |||||||||||||| ||||||||||    
T  45699637 ttggttttgttcgattgacttttaaaataaaatttgaatcaaac 45699680  T

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Target: chr5 (Bit Score: 45; Significance: 4e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 41454884 - 41454968
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattgagtctgtttgtgcg 113  Q
    |||||| |||||| | || ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||  |||||| |||||    
T  41454884 ttggttcggttcggttgacttttaaaataaaatctgaaccaaaccaaaccaaaccaatgcggtttggattggatctgttggtgcg 41454968  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 27572107 - 27572041
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttgg 95  Q
    ||||||||||||| | |  ||||||||||||||| ||| ||||||||| ||||||||| ||||||||    
T  27572107 ttggtttggttcggttgtcttttaaaataaaatccgaaccaaaccaaaccaaaccaatgcggtttgg 27572041  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 40692515 - 40692564
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatca 79  Q
    ||||||||||||| | || |||||||||||||| |||||||||||||||||    
T  40692515 ttggtttggttcggttgacttttaaaataaaat-tgaatcaaaccaaatca 40692564  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 36760136 - 36760180
Alignment:
Q  31 ggtttggttcgatagatttttaaaataaaatctgaatcaaaccaa 75  Q
    ||||||||||||| || ||||||||||||||| ||| ||||||||    
T  36760136 ggtttggttcgattgacttttaaaataaaatccgaaccaaaccaa 36760180  T

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Target: chr4 (Bit Score: 45; Significance: 4e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 20986442 - 20986526
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattgagtctgtttgtgcg 113  Q
    ||||||||||||| | || || ||||||||||| |||| ||||||||| ||||||||| ||||||||||||| || |||||||||    
T  20986442 ttggtttggttcggttgacttataaaataaaatatgaaccaaaccaaaccaaaccaatgcggtttggattgaatcggtttgtgcg 20986526  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 23625960 - 23625893
Alignment:
Q  32 gtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    |||||||||| | || ||||||||||||||||||||||| ||||| |||| |||| ||||||||||||    
T  23625960 gtttggttcgcttgacttttaaaataaaatctgaatcaacccaaaccaaatcaatgcggtttggattg 23625893  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 29335179 - 29335116
Alignment:
Q  31 ggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttg 94  Q
    ||||||||||| | | ||||||||||| ||| |||| ||||||||| |||||||||||||||||    
T  29335179 ggtttggttcggttggtttttaaaatacaatatgaaccaaaccaaaccaaaccaatacggtttg 29335116  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 6333368 - 6333416
Alignment:
Q  65 aatcaaaccaaatcaaaccaatacggtttggattgagtctgtttgtgcg 113  Q
    |||||||||||| ||||||||| ||||||||||||  || |||||||||    
T  6333368 aatcaaaccaaaccaaaccaatgcggtttggattggttcggtttgtgcg 6333416  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 27743243 - 27743287
Alignment:
Q  54 aataaaatctgaatcaaaccaaatcaaaccaatacggtttggatt 98  Q
    ||||||||||||| ||||||||| |||||||||  ||||||||||    
T  27743243 aataaaatctgaaccaaaccaaaccaaaccaatttggtttggatt 27743287  T

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Target: chr4; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 8484705 - 8484756
Alignment:
Q  48 ttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    |||||||||||||  |||| ||||| ||| ||||||||| ||||||||||||    
T  8484705 ttttaaaataaaacatgaaccaaactaaaccaaaccaatgcggtttggattg 8484756  T

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Target: chr4; HSP #7
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 21069085 - 21069136
Alignment:
Q  48 ttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    ||||||||| ||||  ||| |||||||| |||||||||| ||||||||||||    
T  21069085 ttttaaaattaaattcgaaccaaaccaactcaaaccaatgcggtttggattg 21069136  T

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Target: chr4; HSP #8
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 36106481 - 36106434
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaa 76  Q
    ||||||||||||| | || ||||||||||||||| ||| |||||||||    
T  36106481 ttggtttggttcggttgacttttaaaataaaatccgaaccaaaccaaa 36106434  T

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Target: chr4; HSP #9
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 48338361 - 48338412
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaa 80  Q
    ||||||||||||| | || |||||||||||||||  || |||||||||||||    
T  48338361 ttggtttggttcggttgacttttaaaataaaatccaaaccaaaccaaatcaa 48338412  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 7697302 - 7697373
Alignment:
Q  27 ggttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggatt 98  Q
    ||||||||||||||  | || ||||||||||||||| | ||||||||||| ||||||||| |||||||||||    
T  7697302 ggttggtttggttctgttgaattttaaaataaaatccggatcaaaccaaaccaaaccaatgcggtttggatt 7697373  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 2308177 - 2308119
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaata 87  Q
    ||||||||||||| | ||||||||||||||||| |||| || |||||||||||||||||    
T  2308177 ttggtttggttcggttgatttttaaaataaaatttgaaccacaccaaatcaaaccaata 2308119  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 10338869 - 10338822
Alignment:
Q  33 tttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaa 80  Q
    ||||||||||| || ||||||||||||||||||| |||||||||||||    
T  10338869 tttggttcgattgacttttaaaataaaatctgaaccaaaccaaatcaa 10338822  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 23032697 - 23032764
Alignment:
Q  32 gtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    |||||||||| | || |||||||||||||| |||| ||||||||| |||||||||  |||||||||||    
T  23032697 gtttggttcggttgacttttaaaataaaatttgaaccaaaccaaaccaaaccaatgaggtttggattg 23032764  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 11834561 - 11834504
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaat 86  Q
    |||||||||||| || ||||||||||||| | ||||||||||| |||| |||||||||    
T  11834561 ttggtttggttcaattgatttttaaaatacagtctgaatcaaatcaaaccaaaccaat 11834504  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 34751006 - 34751055
Alignment:
Q  27 ggttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaa 76  Q
    ||||||||||||| | | |||||||||||||||||| |||||||||||||    
T  34751006 ggttggtttggtttggttgatttttaaaataaaatccgaatcaaaccaaa 34751055  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 30855112 - 30855155
Alignment:
Q  33 tttggttcgatagatttttaaaataaaatctgaatcaaaccaaa 76  Q
    ||||||| ||| |||||| |||||||||||||||||||||||||    
T  30855112 tttggtttgattgattttaaaaataaaatctgaatcaaaccaaa 30855155  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 43202449 - 43202496
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaa 76  Q
    ||||||||||||| | || |||||||||| ||||||||||||||||||    
T  43202449 ttggtttggttcggttgacttttaaaatacaatctgaatcaaaccaaa 43202496  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 3213284 - 3213214
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    ||||||||||||| | |||||||||||    |||  |||||||||||| ||||||||| ||||||||||||    
T  3213284 ttggtttggttcggttgatttttaaaaagtcatccaaatcaaaccaaaccaaaccaatgcggtttggattg 3213214  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 8118342 - 8118296
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaa 75  Q
    ||||||||||||| | |||||| ||||||||||||||| ||||||||    
T  8118342 ttggtttggttcggttgattttaaaaataaaatctgaaccaaaccaa 8118296  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 21237838 - 21237792
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaa 75  Q
    |||||||| || ||| || ||||||||||||||||||||||||||||    
T  21237838 ttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 21237792  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 47646784 - 47646730
Alignment:
Q  27 ggttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaa 81  Q
    ||||||||||||||| | ||||||||||||||| | |||| ||||||||| ||||    
T  47646784 ggttggtttggttcggttgatttttaaaataaagtttgaaccaaaccaaaccaaa 47646730  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 48642800 - 48642866
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttgg 95  Q
    ||||||||||||| | || ||| ||||| |||| |||| ||||||||| ||||||||| ||||||||    
T  48642800 ttggtttggttcggttgactttaaaaattaaatttgaaccaaaccaaaccaaaccaatgcggtttgg 48642866  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 4153788 - 4153719
Alignment:
Q  30 tggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    |||||||||||| | || ||| || ||||||| |||| ||||| |||||||| ||||| |||||||||||    
T  4153788 tggtttggttcggttgactttaaatataaaatttgaaccaaactaaatcaaatcaatatggtttggattg 4153719  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 30079652 - 30079588
Alignment:
Q  31 ggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttgg 95  Q
    ||||||||| ||| || ||| |||||||||||| ||  |||| ||||||||||||| ||||||||    
T  30079652 ggtttggtttgattgactttaaaaataaaatctaaacgaaactaaatcaaaccaatgcggtttgg 30079588  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 40848871 - 40848955
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattgagtctgtttgtgcg 113  Q
    ||||||||||||| | || ||||||||||||||| ||| ||||  ||| ||||| ||| |||||||| |||| || ||| |||||    
T  40848871 ttggtttggttcggttgacttttaaaataaaatccgaaccaaataaaaccaaactaatgcggtttgggttgaatcggttggtgcg 40848955  T

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Target: chr7; HSP #17
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 46147236 - 46147283
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaa 76  Q
    ||||||||||| | | || ||||||||||||||||||| |||||||||    
T  46147236 ttggtttggtttggttgacttttaaaataaaatctgaaccaaaccaaa 46147283  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 19135174 - 19135104
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    ||||||||||||| | || |||||||||||||| |||| ||||||||||||||| ||| || |||||||||    
T  19135174 ttggtttggttcggttgacttttaaaataaaatatgaaccaaaccaaatcaaactaatgcgatttggattg 19135104  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 22413858 - 22413925
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttgga 96  Q
    ||||||||||||| | || |||||||||||||||||||  ||| ||||  |||||||| |||||||||    
T  22413858 ttggtttggttcggttgacttttaaaataaaatctgaacaaaaacaaacgaaaccaatgcggtttgga 22413925  T

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Target: chr6; HSP #3
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 7170140 - 7170089
Alignment:
Q  48 ttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    ||||||||||||||   || |||||||||||||||||||  |||||||||||    
T  7170140 ttttaaaataaaattcaaaccaaaccaaatcaaaccaatgtggtttggattg 7170089  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 23475173 - 23475103
Alignment:
Q  30 tggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattga 100  Q
    |||||||||||| | ||||||||||||||||| ||||  |||||||| ||||| ||| |||||||||||||    
T  23475173 tggtttggttcggttgatttttaaaataaaatttgaacaaaaccaaaccaaactaatgcggtttggattga 23475103  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 39158366 - 39158319
Alignment:
Q  48 ttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttgg 95  Q
    ||||||||||||||||||||||||||||| |||||||||  |||||||    
T  39158366 ttttaaaataaaatctgaatcaaaccaaaccaaaccaatgtggtttgg 39158319  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 11074461 - 11074391
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    ||||||||||||| | || ||| ||||||||||||||| | ||||||| |||| |||| ||||||||||||    
T  11074461 ttggtttggttcggttgactttaaaaataaaatctgaacctaaccaaaccaaatcaatgcggtttggattg 11074391  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 12973580 - 12973650
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    ||||||||||| | | |||||| ||||||||||| ||||||||||||| ||||| |||  |||||||||||    
T  12973580 ttggtttggtttggttgattttgaaaataaaatccgaatcaaaccaaaccaaactaatgtggtttggattg 12973650  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 11899027 - 11899110
Alignment:
Q  30 tggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattgagtctgtttgtgcg 113  Q
    |||||||||||| | ||||||||||| |  |||  || |||||||||  |||||||||||||||||||||  || |||||||||    
T  11899027 tggtttggttcggttgatttttaaaaaatcatccaaaccaaaccaaactaaaccaatacggtttggattggttcggtttgtgcg 11899110  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 26345101 - 26345050
Alignment:
Q  48 ttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    ||||||||||||||| ||| ||||| ||| ||||||||| ||||||||||||    
T  26345101 ttttaaaataaaatccgaaccaaacaaaaccaaaccaatgcggtttggattg 26345050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 8165613 - 8165547
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttgg 95  Q
    |||||| |||||| | || ||| ||||||||||||||| ||||||||| ||||| ||| ||||||||    
T  8165613 ttggttcggttcggttgactttaaaaataaaatctgaaccaaaccaaaccaaacaaatgcggtttgg 8165547  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 36782437 - 36782371
Alignment:
Q  33 tttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattg 99  Q
    |||||||| || || |||||||||||| |  |||||||| |||| ||||| ||||||||||||||||    
T  36782437 tttggttcaattgacttttaaaataaattgcgaatcaaatcaaaccaaactaatacggtttggattg 36782371  T

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Target: chr8 (Bit Score: 36; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 11218970 - 11219053
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattgagtctgtttgtgc 112  Q
    ||||||||||| | | || |||||||||||| ||||||||||| |||| ||||||||| | |||||||||   |||||||||||    
T  11218970 ttggtttggtttggttgacttttaaaataaagtctgaatcaaatcaaaccaaaccaatgcagtttggatttgatctgtttgtgc 11219053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 24682152 - 24682084
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggatt 98  Q
    |||||||| |||||| || ||||||||||||||| ||| ||||||||| ||||| ||| | |||||||||    
T  24682152 ttggtttgattcgattgacttttaaaataaaatc-gaaccaaaccaaaccaaactaatgcagtttggatt 24682084  T

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Target: scaffold0664 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 6014 - 6099
Alignment:
Q  27 ggttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaaaccaatacggtttggattgagtctgtttgtgc 112  Q
    |||| ||||| ||| || |||||||||||||||||  ||| ||||||||| ||||||||| |||||||| |||  || ||||||||    
T  6014 ggttagtttgtttcaattgatttttaaaataaaattcgaaccaaaccaaaccaaaccaatgcggtttgggttggatcggtttgtgc 6099  T

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Target: scaffold0204 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 25883 - 25934
Alignment:
Q  29 ttggtttggttcgatagatttttaaaataaaatctgaatcaaaccaaatcaa 80  Q
    ||||||||||||| | || |||||||||||||||  || |||||||||||||    
T  25883 ttggtttggttcggttgacttttaaaataaaatccaaaccaaaccaaatcaa 25934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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