View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0589_high_1 (Length: 706)

Name: NF0589_high_1
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0589_high_1
NF0589_high_1
[»] chr2 (6 HSPs)
chr2 (396-698)||(2688433-2688728)
chr2 (54-221)||(2689072-2689234)
chr2 (314-369)||(2688924-2688979)
chr2 (140-220)||(598948-599029)
chr2 (138-220)||(16669107-16669190)
chr2 (181-220)||(38842934-38842973)
[»] chr6 (8 HSPs)
chr6 (139-213)||(26561408-26561483)
chr6 (150-220)||(12140885-12140956)
chr6 (140-221)||(15591156-15591238)
chr6 (140-220)||(7292555-7292636)
chr6 (174-220)||(20717480-20717526)
chr6 (145-213)||(32563257-32563326)
chr6 (473-534)||(34048695-34048756)
chr6 (180-220)||(5893900-5893940)
[»] chr1 (12 HSPs)
chr1 (133-221)||(27659355-27659444)
chr1 (147-220)||(31259568-31259642)
chr1 (143-220)||(52703102-52703180)
chr1 (490-535)||(51436727-51436772)
chr1 (482-532)||(29877360-29877410)
chr1 (140-220)||(8221226-8221307)
chr1 (140-220)||(36379137-36379218)
chr1 (191-220)||(41004984-41005013)
chr1 (474-535)||(41062768-41062829)
chr1 (474-530)||(44906493-44906547)
chr1 (138-166)||(21643031-21643059)
chr1 (490-534)||(27533441-27533485)
[»] chr7 (8 HSPs)
chr7 (140-220)||(1342836-1342917)
chr7 (140-220)||(19757530-19757611)
chr7 (140-220)||(46879538-46879619)
chr7 (137-221)||(22621471-22621556)
chr7 (150-220)||(21313803-21313874)
chr7 (140-220)||(46757770-46757851)
chr7 (181-221)||(33203681-33203721)
chr7 (181-221)||(38481382-38481422)
[»] chr4 (14 HSPs)
chr4 (136-220)||(8716925-8717010)
chr4 (140-220)||(4391715-4391796)
chr4 (140-220)||(25235201-25235282)
chr4 (418-521)||(21392566-21392670)
chr4 (140-220)||(48056613-48056694)
chr4 (140-220)||(55684751-55684832)
chr4 (484-530)||(1298740-1298786)
chr4 (490-536)||(5249939-5249985)
chr4 (140-221)||(20511465-20511547)
chr4 (140-220)||(35190623-35190704)
chr4 (140-220)||(37047085-37047166)
chr4 (181-221)||(4355598-4355638)
chr4 (491-535)||(12595586-12595630)
chr4 (181-221)||(20148808-20148848)
[»] chr3 (12 HSPs)
chr3 (140-220)||(612112-612193)
chr3 (144-220)||(22257717-22257794)
chr3 (138-212)||(9338785-9338860)
chr3 (137-220)||(30859988-30860071)
chr3 (140-220)||(7041121-7041202)
chr3 (140-220)||(29203038-29203119)
chr3 (140-220)||(45368670-45368751)
chr3 (148-221)||(32026419-32026493)
chr3 (137-221)||(33897903-33897988)
chr3 (140-220)||(41518421-41518502)
chr3 (150-221)||(33391973-33392045)
chr3 (477-521)||(50743462-50743506)
[»] chr5 (11 HSPs)
chr5 (140-221)||(9627150-9627232)
chr5 (137-220)||(11100759-11100843)
chr5 (181-220)||(43402545-43402584)
chr5 (474-532)||(31683454-31683512)
chr5 (473-534)||(8686944-8687005)
chr5 (140-220)||(13936251-13936332)
chr5 (148-220)||(27005851-27005924)
chr5 (181-221)||(4379359-4379399)
chr5 (193-221)||(13921838-13921866)
chr5 (141-220)||(18480559-18480639)
chr5 (181-221)||(36027987-36028027)
[»] chr8 (6 HSPs)
chr8 (181-220)||(3511319-3511358)
chr8 (419-521)||(10692436-10692540)
chr8 (143-220)||(2855144-2855222)
chr8 (473-531)||(37942866-37942924)
chr8 (140-220)||(7378907-7378988)
chr8 (490-534)||(7598779-7598823)
[»] scaffold0016 (1 HSPs)
scaffold0016 (148-221)||(84323-84397)
[»] scaffold0010 (1 HSPs)
scaffold0010 (490-536)||(134258-134304)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-107; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 396 - 698
Target Start/End: Complemental strand, 2688728 - 2688433
Alignment:
Q  396 ttagataaaattccaaatataaaaaagagaaatgatatttgaactgtcgttttgttataatttttgggacaactatattcatatttatattgtattttta 495  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  2688728 ttagataaaatcccaaatataaaaaagagaaatgatatttgaactgtcattttgttataatttttgggacaactttattcatattcatattgtattttta 2688629  T
Q  496 ctttctctattgattgttttggttttcatgtcaatacctatgtttattcatcaaaatggtttcaaagatgaaaaagcagagtattactataaataaagnn 595  Q
    ||||||||||  |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||       
T  2688628 ctttctctatcaattgttttggtttttatgtcaatacctatatttattcatcaaaatggtttcaaagatgaaaaagcagagtattac-ataaataaa--- 2688533  T
Q  596 nnnnnnnnnnnnnnnnnaagaactctaaataaaaaatgttagctggtttcagttccgcgtttgtattttctaccatagtttcacaaaaaccaaattctct 695  Q
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2688532 ---attttcttttttttaagaactctaaataaaaaatgttagctggtttcagttccgcgtttgtattttctaccatagtttcacaaaaaccaaattctct 2688436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 2689234 - 2689072
Alignment:
Q  54 tggcaagaccaagaaattcgcttatagattatagtagataagctcgttttacgaagnnnnnnnnnnnntctcatttgacaatagtctttttacaacgagc 153  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||||||||| ||             |||| |||||||| | ||||||||||| ||||    
T  2689234 tggcaagaccaagaaattaacttatagattatagcagataagctcgttttacaaa-----aaaaaaaatctcgtttgacaacaatctttttacaatgagc 2689140  T
Q  154 ttatagtttatttcagaagctatagtttattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2689139 ttatagcttatttcagaagctatagtttattttccaaaagctatttcaagtagcgtttgaacttataa 2689072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 2688979 - 2688924
Alignment:
Q  314 acattactagaaataaatttaagggacgttataacttgccggttgtaaccaccaac 369  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2688979 acattactagcaataaatttaagggacgttataacttgccggttgtaaccaccaac 2688924  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 598948 - 599029
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    ||||||||||||| ||||||||||||||| |||| ||||   |||||| || |||||| |||||||||||||||| ||||||    
T  598948 tttttacaacgagtttatagtttatttcaaaagcttataagctatttttcagaagctacttcaagtagcgtttgagcttata 599029  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 16669107 - 16669190
Alignment:
Q  138 tctttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    ||||| |||||||||||||||| ||||||||| ||| ||||   |||||| || | |||||| |||||||||||||| ||||||    
T  16669107 tctttctacaacgagcttatagcttatttcaggagcttataagctatttttcagacgctattccaagtagcgtttgagcttata 16669190  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 38842934 - 38842973
Alignment:
Q  181 tattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  38842934 tatttttcagaagctatttcaagtagcgtttgaacttata 38842973  T

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Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 26561408 - 26561483
Alignment:
Q  139 ctttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttga 213  Q
    ||||||||||||||||||||||||||||||| ||| ||||  ||||||| |||| |||||||||||||||||||||    
T  26561408 ctttttacaacgagcttatagtttatttcaggagcttataacttatttttcaaacgctatttcaagtagcgtttga 26561483  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 12140956 - 12140885
Alignment:
Q  150 gagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||||||  |||| |||   |||||| || ||||||||||||||||||||||||||||||    
T  12140956 gagcttatagtttatttcacgagcttataagctatttttcagaagctatttcaagtagcgtttgaacttata 12140885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 15591238 - 15591156
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    |||||||||||||||||||| ||||||||  |||| |||   |||||| || |||||| |||||||||||||||| |||||||    
T  15591238 tttttacaacgagcttatagcttatttcacgagcttataaactatttttcagaagctacttcaagtagcgtttgagcttataa 15591156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 7292636 - 7292555
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    ||||||||| |||||||||| ||||||||||||| ||||   |||||| || |||||| |||||||| ||||||| ||||||    
T  7292636 tttttacaatgagcttatagcttatttcagaagcttataagctatttttcataagctacttcaagtaacgtttgagcttata 7292555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 20717480 - 20717526
Alignment:
Q  174 tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||| ||||||||||| | | ||||||||||||||||||||||||||    
T  20717480 tatactttattttccagacgttatttcaagtagcgtttgaacttata 20717526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 32563326 - 32563257
Alignment:
Q  145 acaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttga 213  Q
    ||||||||||||||  ||||||||||||| |||| |||||||| || | |||||||||| ||| ||||||    
T  32563326 acaacgagcttataacttatttcagaagcttataatttatttttcagacgctatttcaaatagtgtttga 32563257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 534
Target Start/End: Complemental strand, 34048756 - 34048695
Alignment:
Q  473 ttcatatttatattgtatttttactttctctattgattgttttggttttcatgtcaatacct 534  Q
    |||||| ||| ||| ||| |||||||||||| || ||||||||||||||  |||||||||||    
T  34048756 ttcatacttacattatatatttactttctctttttattgttttggttttattgtcaatacct 34048695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 5893940 - 5893900
Alignment:
Q  180 ttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||| | ||||||||||||||||||||| ||||||    
T  5893940 ttattttccagacgctatttcaagtagcgtttgagcttata 5893900  T

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Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 27659444 - 27659355
Alignment:
Q  133 aatagtctttttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    |||||||||| | |||||| ||||||  ||||||||| || | ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  27659444 aatagtctttattcaacgaacttataacttatttcaggagtttatagtttattttccaaacgctatttcaagtagcgtttgagcttataa 27659355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 31259642 - 31259568
Alignment:
Q  147 aacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    ||||||||||||||||||||||| ||| | ||| |||||||| ||| | |||||||| |||||||||| ||||||    
T  31259642 aacgagcttatagtttatttcaggagcttttagcttattttctaaacgttatttcaaatagcgtttgagcttata 31259568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 52703180 - 52703102
Alignment:
Q  143 ttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||| |||||||||||| ||||||||  |||| |||  ||||||| || ||||||||||||||||||||||| ||||||    
T  52703180 ttaccacgagcttatagcttatttcacgagcttataagttatttttcagaagctatttcaagtagcgtttgagcttata 52703102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 535
Target Start/End: Complemental strand, 51436772 - 51436727
Alignment:
Q  490 tttttactttctctattgattgttttggttttcatgtcaataccta 535  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||    
T  51436772 tttttactttatctctttattgttttggttttcatgtcaataccta 51436727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 532
Target Start/End: Original strand, 29877360 - 29877410
Alignment:
Q  482 atattgtatttttactttctctattgattgttttggttttcatgtcaatac 532  Q
    ||||||||| |||||||||||| |  ||||||||||||||| |||||||||    
T  29877360 atattgtatctttactttctctctctattgttttggttttcgtgtcaatac 29877410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 8221307 - 8221226
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||||||| ||||||||  ||| ||||   |||||| ||||| ||||| ||| ||||||||||| |||||    
T  8221307 tttttacaacgagcttatagcttatttcacgagcttataagctatttttcaaaaactattccaaatagcgtttgaatttata 8221226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 36379218 - 36379137
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    ||||||| | ||| |||||||||||||||  || | |||  ||||||| ||||||||||| |||||||||||||| ||||||    
T  36379218 tttttacgatgagtttatagtttatttcatgagtttataagttatttttcaaaagctattccaagtagcgtttgagcttata 36379137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 220
Target Start/End: Complemental strand, 41005013 - 41004984
Alignment:
Q  191 aagctatttcaagtagcgtttgaacttata 220  Q
    ||||||||||||||||||||||||||||||    
T  41005013 aagctatttcaagtagcgtttgaacttata 41004984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 535
Target Start/End: Original strand, 41062768 - 41062829
Alignment:
Q  474 tcatatttatattgtatttttactttctctattgattgttttggttttcatgtcaataccta 535  Q
    ||||||| ||||| |||||||||||||||| || ||||||||| |||| || | ||||||||    
T  41062768 tcatattcatattatatttttactttctcttttcattgttttgatttttatattaataccta 41062829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 530
Target Start/End: Complemental strand, 44906547 - 44906493
Alignment:
Q  474 tcatatttatattgtatttttactttctctattgattgttttggttttcatgtcaat 530  Q
    ||||| ||| ||| ||||||||||||||||||  ||| |||||||||||||||||||    
T  44906547 tcatacttagattatatttttactttctctat--attattttggttttcatgtcaat 44906493  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 21643031 - 21643059
Alignment:
Q  138 tctttttacaacgagcttatagtttattt 166  Q
    |||||||||||||||||||||||||||||    
T  21643031 tctttttacaacgagcttatagtttattt 21643059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 490 - 534
Target Start/End: Complemental strand, 27533485 - 27533441
Alignment:
Q  490 tttttactttctctattgattgttttggttttcatgtcaatacct 534  Q
    |||||||||||||| || ||||||||| |||| ||||||||||||    
T  27533485 tttttactttctctctttattgttttgatttttatgtcaatacct 27533441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 1342836 - 1342917
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||||||| ||||||||||||| ||||   |||||| || |||||| |||||||||||||||| ||||||    
T  1342836 tttttacaacgagcttatagcttatttcagaagcttataagctatttttcagaagctacttcaagtagcgtttgagcttata 1342917  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 19757611 - 19757530
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||||||| ||| ||||| |||| |||   |||||| ||||||||| |||||||||||||||| ||||||    
T  19757611 tttttacaacgagcttatagcttaattcaggagcttataagctatttttcaaaagctacttcaagtagcgtttgagcttata 19757530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 46879619 - 46879538
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||||||| ||||||||| ||| ||||   |||||| || |||||| |||||||||||||||| ||||||    
T  46879619 tttttacaacgagcttatagcttatttcaggagcttataagctatttttcagaagctacttcaagtagcgtttgagcttata 46879538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 22621556 - 22621471
Alignment:
Q  137 gtctttttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    |||||||||||||||| |||||||||||||||| |||| |||  ||||||| || |   ||||||||| ||||||||| |||||||    
T  22621556 gtctttttacaacgagattatagtttatttcaggagctcataacttatttttcagacattatttcaagcagcgtttgagcttataa 22621471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 21313874 - 21313803
Alignment:
Q  150 gagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||| |||||||| ||||| |||   |||||| ||||||||||| |||||||||||||| ||||||    
T  21313874 gagcttatagcttatttcacaagcttataagctatttttcaaaagctattccaagtagcgtttgagcttata 21313803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 46757770 - 46757851
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||||||  ||||||||  |||| |||   |||||| || |||||| |||||||||||||||| ||||||    
T  46757770 tttttacaacgagcttataacttatttcatgagcttataagctatttttcagaagctacttcaagtagcgtttgagcttata 46757851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 33203721 - 33203681
Alignment:
Q  181 tattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    |||||| || ||||||||||||||||||||||| |||||||    
T  33203721 tatttttcagaagctatttcaagtagcgtttgagcttataa 33203681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 38481382 - 38481422
Alignment:
Q  181 tattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    |||||| ||||||||||| |||||||||||||| |||||||    
T  38481382 tatttttcaaaagctattccaagtagcgtttgagcttataa 38481422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 8717010 - 8716925
Alignment:
Q  136 agtctttttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||| || || ||||||| |||||||| ||||| ||||||||||||||| | |||||||||||||| |||||| ||||||    
T  8717010 agtctttttataaggaacttatagcttatttcaaaagcttatagtttattttccagaggctatttcaagtagtgtttgagcttata 8716925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 4391796 - 4391715
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||||||| ||||||||| ||| ||||   |||||| || |||||| |||||||||||||||| ||||||    
T  4391796 tttttacaacgagcttatagcttatttcaggagcttataagctatttttcagaagctacttcaagtagcgtttgagcttata 4391715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 25235201 - 25235282
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||||||| ||||||||| ||| ||||   |||||| || |||||| |||||||||||||||| ||||||    
T  25235201 tttttacaacgagcttatagcttatttcaggagcttataagctatttttcagaagctacttcaagtagcgtttgagcttata 25235282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 521
Target Start/End: Original strand, 21392566 - 21392670
Alignment:
Q  418 aaaagagaaatgatatttgaactgtcgttttgttataatttttgggacaactat---attcatatttatattgtatttttactttctctattgattgttt 514  Q
    ||||||||||||||||||||||  || |||||| |||||||||| |||| || |    |||||||||||||| | |||||||||| ||| |  |||||||    
T  21392566 aaaagagaaatgatatttgaacaatcattttgtaataatttttgtgacagctttctctttcatatttatattatgtttttactttatctct--attgttt 21392663  T
Q  515 tggtttt 521  Q
    |||||||    
T  21392664 tggtttt 21392670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 48056694 - 48056613
Alignment:
Q  140 tttttacaacgagcttatagtttatttca-gaagctatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||| |||||||||||||||| |||  ||||  ||||||| || | |||||| |||||||||||||| ||||||    
T  48056694 tttttacaacgaacttatagtttatttcacgaacttataagttatttttcagacgctattccaagtagcgtttgagcttata 48056613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 55684751 - 55684832
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||| ||| ||||||||| |||| |||   |||||| || |||||| |||||||||||||||| ||||||    
T  55684751 tttttacaacgagcttctagcttatttcaggagcttataagctatttttcagaagctacttcaagtagcgtttgagcttata 55684832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 530
Target Start/End: Complemental strand, 1298786 - 1298740
Alignment:
Q  484 attgtatttttactttctctattgattgttttggttttcatgtcaat 530  Q
    |||||||| ||||||||||| || |||||||||||||| ||||||||    
T  1298786 attgtattcttactttctctctttattgttttggtttttatgtcaat 1298740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 536
Target Start/End: Original strand, 5249939 - 5249985
Alignment:
Q  490 tttttactttctctattgattgttttggttttcatgtcaatacctat 536  Q
    |||||||||||||| |  ||||||||||||||| |||||||||||||    
T  5249939 tttttactttctctctctattgttttggttttcgtgtcaatacctat 5249985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 20511465 - 20511547
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    |||||||||||||||||||| ||||||||  ||| ||||   |||||| || | |||||| |||||||||||||| |||||||    
T  20511465 tttttacaacgagcttatagcttatttcatgagcttataagctatttttcagacgctattccaagtagcgtttgagcttataa 20511547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 35190704 - 35190623
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    ||||||||||||| || ||| ||||||||| |||| |||   |||||| || |||||| |||||||||||||||| ||||||    
T  35190704 tttttacaacgagtttgtagcttatttcaggagcttataagctatttttcagaagctacttcaagtagcgtttgagcttata 35190623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 37047085 - 37047166
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||||||| |||||| || ||| ||||   |||||| || |||||| ||||| |||||||||| ||||||    
T  37047085 tttttacaacgagcttatagcttattttaggagcttataagctatttttcagaagctacttcaaatagcgtttgagcttata 37047166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 4355638 - 4355598
Alignment:
Q  181 tattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    |||||| || ||||||||||||||||||||||| |||||||    
T  4355638 tatttttcagaagctatttcaagtagcgtttgagcttataa 4355598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 491 - 535
Target Start/End: Complemental strand, 12595630 - 12595586
Alignment:
Q  491 ttttactttctctattgattgttttggttttcatgtcaataccta 535  Q
    ||||||||||||| |  ||||||||||||||| ||||||||||||    
T  12595630 ttttactttctctctctattgttttggttttcgtgtcaataccta 12595586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 20148848 - 20148808
Alignment:
Q  181 tattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    |||||| || ||||||||||||||||||||||| |||||||    
T  20148848 tatttttcagaagctatttcaagtagcgtttgagcttataa 20148808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 612112 - 612193
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    ||||||||||||||||||||||| ||| |||||| ||||  |||||||||| | || |||||||||||||||||| ||||||    
T  612112 tttttacaacgagcttatagtttcttttagaagcttataacttattttccatacgccatttcaagtagcgtttgagcttata 612193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 22257717 - 22257794
Alignment:
Q  144 tacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||| ||||||| |||||||| ||||| || | ||||||| |||| ||||||||||||||||||||| ||||||    
T  22257717 tacaacgaccttatagcttatttcataagcttattgcttatttttcaaatgctatttcaagtagcgtttgagcttata 22257794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 9338860 - 9338785
Alignment:
Q  138 tctttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttg 212  Q
    |||||||||||||||||||||| |||||||| |||| ||||  |||||||  ||| |||||||||||||| |||||    
T  9338860 tctttttacaacgagcttatagcttatttcataagcttataacttattttttaaatgctatttcaagtagtgtttg 9338785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 30859988 - 30860071
Alignment:
Q  137 gtctttttacaacgagcttatagtttatttcagaagctatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    ||||||||||||||||| |||| ||||||| |||   |||| ||||||||  ||| |||||||||| ||||||||||| |||||    
T  30859988 gtctttttacaacgagcctataatttatttaagagtttatattttattttttaaacgctatttcaaatagcgtttgaatttata 30860071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 7041121 - 7041202
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||||||| ||||||||| ||| ||||   |||||| || |||||| |||||||||||||| | ||||||    
T  7041121 tttttacaacgagcttatagcttatttcaggagcttataagctatttttcagaagctacttcaagtagcgtttaagcttata 7041202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 29203119 - 29203038
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||||||||||||||||  ||| ||||   |||||| || | ||||||||||||||| ||||| ||||||    
T  29203119 tttttacaacgagcttatagtttatttcacgagcttataagctatttttcagacgctatttcaagtagcatttgagcttata 29203038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 45368670 - 45368751
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||| ||||||||| ||||||||| |||| |||   |||||| || |||||| |||||||||||||||| ||||||    
T  45368670 tttttacaacaagcttatagcttatttcaggagcttataagctatttttcagaagctacttcaagtagcgtttgagcttata 45368751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 32026493 - 32026419
Alignment:
Q  148 acgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    ||||||||||||||||||||| |||| ||||   |||||| || | |||||| |||||||||||||| |||||||    
T  32026493 acgagcttatagtttatttcacaagcttataagctatttttcagatgctattccaagtagcgtttgagcttataa 32026419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 33897988 - 33897903
Alignment:
Q  137 gtctttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    ||||||| || |||||||||||| |||||||| |||| ||||   |||||| || | |||||| ||| ||||||||||||||||||    
T  33897988 gtcttttcaccacgagcttatagcttatttcacaagcttataagctatttttcagacgctattccaaatagcgtttgaacttataa 33897903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 41518421 - 41518502
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    ||||||||| |||||||||| ||||||||  |||| |||   |||||| || |||||| |||||||||||||||| ||||||    
T  41518421 tttttacaatgagcttatagcttatttcaagagcttataaactatttttcagaagctacttcaagtagcgtttgagcttata 41518502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 33391973 - 33392045
Alignment:
Q  150 gagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    |||||||||||||||||||  |||| |||   |||||| || |||||||| |||||||||||||| |||||||    
T  33391973 gagcttatagtttatttcatgagcttataagctatttttcagaagctattccaagtagcgtttgagcttataa 33392045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 50743462 - 50743506
Alignment:
Q  477 tatttatattgtatttttactttctctattgattgttttggtttt 521  Q
    |||||||||| |||||||||||| |||||| ||| ||||||||||    
T  50743462 tatttatattatatttttactttatctatttattattttggtttt 50743506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 9627232 - 9627150
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    ||||||||| |||||||||| ||||||||||||| ||||   |||||| || |||||| |||||||||||||||| |||||||    
T  9627232 tttttacaatgagcttatagcttatttcagaagcttataagctatttttcagaagctacttcaagtagcgtttgagcttataa 9627150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 11100843 - 11100759
Alignment:
Q  137 gtctttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    ||||||||||||||||||||||| ||||||||  ||| ||||   |||||| || | |||||| |||||||||||||| ||||||    
T  11100843 gtctttttacaacgagcttatagcttatttcacgagcttataagctatttttcagacgctattccaagtagcgtttgagcttata 11100759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 43402545 - 43402584
Alignment:
Q  181 tattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  43402545 tatttttcaaaagctatttcaagtagcgtttgagcttata 43402584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 532
Target Start/End: Complemental strand, 31683512 - 31683454
Alignment:
Q  474 tcatatttatattgtatttttactttctctattgattgttttggttttcatgtcaatac 532  Q
    ||||||| ||||| | |||||||||||||| || ||||||||||||||  |||||||||    
T  31683512 tcatattcatattatgtttttactttctctttttattgttttggtttttgtgtcaatac 31683454  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 534
Target Start/End: Original strand, 8686944 - 8687005
Alignment:
Q  473 ttcatatttatattgtatttttactttctctattgattgttttggttttcatgtcaatacct 534  Q
    |||||||||||||| | |||||||||| | | || ||||||||||||||  |||||||||||    
T  8686944 ttcatatttatattatctttttactttatttttttattgttttggtttttgtgtcaatacct 8687005  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 13936251 - 13936332
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||||||| ||||||||  ||| ||||   |||||| || | ||||||||||||||| ||||| ||||||    
T  13936251 tttttacaacgagcttatagcttatttcatgagcttataagctatttttcagacgctatttcaagtagcatttgagcttata 13936332  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 27005924 - 27005851
Alignment:
Q  148 acgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||| ||||||| ||||||||  |||| |||  |||||||||||| ||||||||||||| ||||||| ||||||    
T  27005924 acgaacttatagcttatttcaagagcttataacttattttccaaacgctatttcaagtaacgtttgagcttata 27005851  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 4379359 - 4379399
Alignment:
Q  181 tattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    |||||| || ||||||||||||||||||||||| |||||||    
T  4379359 tatttttcagaagctatttcaagtagcgtttgagcttataa 4379399  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 13921838 - 13921866
Alignment:
Q  193 gctatttcaagtagcgtttgaacttataa 221  Q
    |||||||||||||||||||||||||||||    
T  13921838 gctatttcaagtagcgtttgaacttataa 13921866  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 18480639 - 18480559
Alignment:
Q  141 ttttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||| |||||||||||  |||||||| ||||| ||||||||||||  | | ||||| ||||||||| ||||| ||||||    
T  18480639 ttttactacgagcttatatcttatttcacaagcttatagtttattttttagacgctatctcaagtagcatttgagcttata 18480559  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 36028027 - 36027987
Alignment:
Q  181 tattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    |||||| || ||||||||||||||||||||||| |||||||    
T  36028027 tatttttcagaagctatttcaagtagcgtttgagcttataa 36027987  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 3511319 - 3511358
Alignment:
Q  181 tattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  3511319 tatttttcagaagctatttcaagtagcgtttgaacttata 3511358  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 521
Target Start/End: Original strand, 10692436 - 10692540
Alignment:
Q  419 aaagagaaatgatatttgaactgtcgttttgttataatttttgggacaactatat---tcatatttatattgtatttttactttctctattgattgtttt 515  Q
    |||||||||||||||||||||  || |||| |||||||||||| ||||||| |||   ||||| | | ||| | |||||||||||||| |  ||||||||    
T  10692436 aaagagaaatgatatttgaacaatcatttt-ttataatttttgtgacaactttatctctcatactcacattatctttttactttctctctctattgtttt 10692534  T
Q  516 ggtttt 521  Q
    ||||||    
T  10692535 ggtttt 10692540  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 2855144 - 2855222
Alignment:
Q  143 ttacaacgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||| |||||||||||| ||||||||  |||| |||   |||||| |||||| ||||||||||||||||||| ||||||    
T  2855144 ttaccacgagcttatagcttatttcacgagcttataagctatttttcaaaagttatttcaagtagcgtttgagcttata 2855222  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 473 - 531
Target Start/End: Complemental strand, 37942924 - 37942866
Alignment:
Q  473 ttcatatttatattgtatttttactttctctattgattgttttggttttcatgtcaata 531  Q
    |||||||||| ||| |||||||||||||||| |  |||||||| ||||| |||||||||    
T  37942924 ttcatatttacattatatttttactttctctctctattgttttagtttttatgtcaata 37942866  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 7378907 - 7378988
Alignment:
Q  140 tttttacaacgagcttatagtttatttcagaagc-tatagtttattttccaaaagctatttcaagtagcgtttgaacttata 220  Q
    |||||||||||||||||||| ||||||||  ||| ||||   |||||| || |||||| ||||||||| |||||| ||||||    
T  7378907 tttttacaacgagcttatagcttatttcatgagcttataagctatttttcagaagctacttcaagtagtgtttgagcttata 7378988  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 490 - 534
Target Start/End: Original strand, 7598779 - 7598823
Alignment:
Q  490 tttttactttctctattgattgttttggttttcatgtcaatacct 534  Q
    ||||||||||||| ||  |||||||||||||| ||||||||||||    
T  7598779 tttttactttctcaatatattgttttggtttttatgtcaatacct 7598823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 84323 - 84397
Alignment:
Q  148 acgagcttatagtttatttcagaagct-atagtttattttccaaaagctatttcaagtagcgtttgaacttataa 221  Q
    |||||||||||| ||||||||  |||| |||   |||||| || ||||||||||||||||||||||| |||||||    
T  84323 acgagcttatagcttatttcacgagcttataaactatttttcagaagctatttcaagtagcgtttgagcttataa 84397  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 536
Target Start/End: Complemental strand, 134304 - 134258
Alignment:
Q  490 tttttactttctctattgattgttttggttttcatgtcaatacctat 536  Q
    |||||||||| ||| || ||||||||||||||| |||||||||||||    
T  134304 tttttactttatctctttattgttttggttttcgtgtcaatacctat 134258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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