View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0589_high_16 (Length: 402)

Name: NF0589_high_16
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0589_high_16
NF0589_high_16
[»] chr4 (23 HSPs)
chr4 (16-232)||(42929559-42929761)
chr4 (232-373)||(39480573-39480714)
chr4 (232-370)||(10095347-10095485)
chr4 (231-373)||(6261939-6262080)
chr4 (232-295)||(14192702-14192764)
chr4 (232-279)||(14033729-14033775)
chr4 (232-279)||(36213396-36213443)
chr4 (232-295)||(49242563-49242625)
chr4 (232-295)||(51337307-51337369)
chr4 (232-293)||(28143836-28143896)
chr4 (304-373)||(36213451-36213519)
chr4 (232-276)||(38052595-38052638)
chr4 (231-293)||(29283371-29283432)
chr4 (232-293)||(7414127-7414188)
chr4 (232-293)||(7460208-7460269)
chr4 (234-295)||(17647959-17648019)
chr4 (265-373)||(41509512-41509618)
chr4 (232-337)||(10373726-10373831)
chr4 (304-369)||(52458730-52458795)
chr4 (304-369)||(52459987-52460052)
chr4 (317-373)||(3665781-3665837)
chr4 (233-336)||(42514039-42514139)
chr4 (231-279)||(56367285-56367332)
[»] chr6 (16 HSPs)
chr6 (233-373)||(18674997-18675137)
chr6 (230-373)||(20990098-20990238)
chr6 (231-370)||(21442392-21442532)
chr6 (232-369)||(1603013-1603150)
chr6 (232-370)||(34043181-34043319)
chr6 (231-347)||(1131415-1131530)
chr6 (308-373)||(1422674-1422739)
chr6 (232-293)||(22012514-22012575)
chr6 (231-295)||(14677385-14677448)
chr6 (231-369)||(15059810-15059949)
chr6 (232-279)||(31475173-31475219)
chr6 (235-279)||(34040421-34040465)
chr6 (232-295)||(33516978-33517040)
chr6 (232-278)||(9534331-9534376)
chr6 (306-370)||(26817080-26817142)
chr6 (262-362)||(22524548-22524648)
[»] chr8 (14 HSPs)
chr8 (230-373)||(7973301-7973444)
chr8 (233-373)||(39905874-39906012)
chr8 (232-370)||(1981234-1981372)
chr8 (232-373)||(40971089-40971229)
chr8 (232-342)||(3762339-3762450)
chr8 (232-369)||(31597165-31597301)
chr8 (232-302)||(45117137-45117208)
chr8 (232-362)||(4432402-4432531)
chr8 (287-371)||(18327012-18327096)
chr8 (232-299)||(16729378-16729445)
chr8 (232-282)||(7264041-7264091)
chr8 (232-309)||(6927907-6927983)
chr8 (230-295)||(3509845-3509909)
chr8 (232-295)||(11995097-11995159)
[»] chr5 (16 HSPs)
chr5 (232-373)||(9409872-9410013)
chr5 (232-373)||(42879239-42879379)
chr5 (230-373)||(39537707-39537847)
chr5 (232-373)||(13490034-13490173)
chr5 (232-369)||(2676608-2676745)
chr5 (232-369)||(13382925-13383062)
chr5 (232-295)||(5579003-5579066)
chr5 (235-294)||(18888714-18888773)
chr5 (231-295)||(38490701-38490764)
chr5 (232-279)||(41869418-41869464)
chr5 (232-292)||(7849977-7850036)
chr5 (232-373)||(16040505-16040646)
chr5 (232-279)||(6950353-6950399)
chr5 (232-279)||(43324121-43324167)
chr5 (232-292)||(14652123-14652182)
chr5 (233-293)||(33922691-33922751)
[»] chr7 (19 HSPs)
chr7 (232-373)||(18667012-18667152)
chr7 (232-373)||(13753759-13753899)
chr7 (231-347)||(4539511-4539627)
chr7 (232-370)||(8389622-8389760)
chr7 (232-373)||(43823964-43824110)
chr7 (235-373)||(20395107-20395243)
chr7 (232-369)||(31072850-31072988)
chr7 (232-369)||(35478301-35478436)
chr7 (232-373)||(44733170-44733309)
chr7 (231-295)||(48238115-48238178)
chr7 (232-279)||(15680122-15680168)
chr7 (232-295)||(48636360-48636422)
chr7 (232-293)||(8069234-8069294)
chr7 (231-279)||(12379302-12379349)
chr7 (232-295)||(19312326-19312388)
chr7 (232-277)||(45446446-45446491)
chr7 (232-279)||(135357-135403)
chr7 (229-279)||(37549188-37549237)
chr7 (247-279)||(6189798-6189830)
[»] scaffold0016 (5 HSPs)
scaffold0016 (232-373)||(89379-89517)
scaffold0016 (232-373)||(87952-88091)
scaffold0016 (232-373)||(88428-88567)
scaffold0016 (232-373)||(88904-89043)
scaffold0016 (232-366)||(87486-87617)
[»] chr2 (24 HSPs)
chr2 (231-369)||(19685438-19685576)
chr2 (232-373)||(2553702-2553841)
chr2 (232-368)||(33015518-33015654)
chr2 (232-373)||(41826283-41826422)
chr2 (232-373)||(22576302-22576442)
chr2 (232-293)||(44314441-44314502)
chr2 (232-293)||(44322620-44322681)
chr2 (226-370)||(6221022-6221166)
chr2 (243-373)||(40709826-40709951)
chr2 (235-373)||(11199603-11199735)
chr2 (232-295)||(2565275-2565337)
chr2 (231-295)||(90713-90776)
chr2 (232-308)||(7880699-7880774)
chr2 (268-366)||(7443842-7443938)
chr2 (232-279)||(18582958-18583004)
chr2 (232-295)||(18781561-18781623)
chr2 (232-295)||(45277865-45277927)
chr2 (231-279)||(38696797-38696844)
chr2 (236-295)||(14903684-14903743)
chr2 (232-291)||(33054399-33054457)
chr2 (318-373)||(27862124-27862179)
chr2 (232-293)||(19674457-19674517)
chr2 (232-300)||(24484160-24484227)
chr2 (232-276)||(25472663-25472706)
[»] chr3 (17 HSPs)
chr3 (230-369)||(53077291-53077432)
chr3 (232-370)||(19156736-19156874)
chr3 (232-373)||(52447788-52447926)
chr3 (239-370)||(15760509-15760640)
chr3 (232-356)||(27941852-27941976)
chr3 (232-279)||(25071278-25071325)
chr3 (232-295)||(6025144-6025206)
chr3 (232-279)||(10994534-10994581)
chr3 (232-295)||(23045260-23045322)
chr3 (232-295)||(31885333-31885395)
chr3 (232-279)||(36640723-36640769)
chr3 (232-279)||(1420207-1420253)
chr3 (232-279)||(22917793-22917839)
chr3 (232-279)||(30376917-30376963)
chr3 (270-368)||(24928166-24928263)
chr3 (232-295)||(1424344-1424406)
chr3 (231-279)||(9467871-9467917)
[»] chr1 (19 HSPs)
chr1 (232-369)||(5049096-5049233)
chr1 (232-373)||(23664437-23664576)
chr1 (232-369)||(27431114-27431252)
chr1 (231-369)||(48999049-48999187)
chr1 (231-369)||(21906020-21906159)
chr1 (241-373)||(9022867-9022998)
chr1 (231-295)||(26221340-26221403)
chr1 (232-295)||(22070145-22070208)
chr1 (232-370)||(48596668-48596806)
chr1 (235-295)||(34307846-34307905)
chr1 (232-279)||(1347121-1347167)
chr1 (326-373)||(25094887-25094934)
chr1 (232-295)||(36296358-36296420)
chr1 (232-295)||(42721895-42721957)
chr1 (233-279)||(9956586-9956631)
chr1 (232-293)||(28946200-28946260)
chr1 (232-277)||(32179194-32179238)
chr1 (304-373)||(44310173-44310242)
chr1 (228-282)||(33051753-33051806)
[»] scaffold0308 (1 HSPs)
scaffold0308 (232-369)||(12414-12550)
[»] scaffold0601 (1 HSPs)
scaffold0601 (231-295)||(6427-6491)
[»] scaffold0093 (1 HSPs)
scaffold0093 (231-368)||(50564-50707)
[»] scaffold0116 (1 HSPs)
scaffold0116 (232-337)||(40460-40563)
[»] scaffold0743 (1 HSPs)
scaffold0743 (233-279)||(3696-3741)
[»] scaffold0295 (1 HSPs)
scaffold0295 (247-281)||(4627-4661)
[»] scaffold0065 (1 HSPs)
scaffold0065 (235-299)||(65985-66048)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 42929761 - 42929559
Alignment:
Q  16 accaatctattagctagtataatt-caaaaggccaaatattttaaataatgtgagnnnnnnnnnctttcatcgaaaaaattatgtaccatattttccacn 114  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||     
T  42929761 accaatctactagctagtataatttcaaaaggccaaatattttaaataatgtgagtttttttttctttcatcgaaaaaattatgtaccatattttccaca 42929662  T
Q  115 nnnnnngtaaatgatagatggatttgcagaaaaatggaatttgaagggaacataataattagtggaaagtaaactacaactgaactaatcacaagcccgt 214  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||    
T  42929661 aaaaaagtaaatgatagatggatttgcagaaaaatggaatttgaagggaacataataat---------------cacaactgaactaatcacaagcccgt 42929577  T
Q  215 ctcaaccaatcttgaggc 232  Q
    |||||||||||| |||||    
T  42929576 ctcaaccaatctcgaggc 42929559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 39480714 - 39480573
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||  | ||||||| ||| |||| |||| ||||||    
T  39480714 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaaagtttttttaaagtgtagggggtatatagaaa 39480615  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  39480614 tatttggattttggggggtatatatagcaaaattctctgaaa 39480573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 232 - 370
Target Start/End: Complemental strand, 10095485 - 10095347
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| || |||||| ||||||||||  |||||||||| |||||    
T  10095485 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggacccaaattt-tttttaaggtaagagggtgtatatagaa 10095387  T
Q  331 atatttggattttggggaatatatatagcaaaattctctg 370  Q
    ||||||||||||  |||||||||||||| || ||||||||    
T  10095386 atatttggatttctgggaatatatatagaaacattctctg 10095347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 373
Target Start/End: Complemental strand, 6262080 - 6261939
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaa 330  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || || || ||||||||| |||  | ||||||||||| ||||||||| |||||    
T  6262080 gcagggccggccctagggcataggccgcgagtgcgacggcctaagg-ccatgccggtagggggcccaaaagtttttttaaggtgtagggtgtatatagaa 6261982  T
Q  331 atatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    ||||| ||||||||| |  |||||||||  |||||||||||||    
T  6261981 atattaggattttggagggtatatatagtcaaattctctgaaa 6261939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 14192764 - 14192702
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||||    
T  14192764 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 14192702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 14033775 - 14033729
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  14033775 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 14033729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 36213396 - 36213443
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||    
T  36213396 cagggccggccctagggcataggccgcgaatgcgacggcctacggccc 36213443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 49242563 - 49242625
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||| |  |||||||||    
T  49242563 cagggccggccctagg-cataggccgggagtgcgacggcctagggcccttgcccgtagggggcc 49242625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 51337307 - 51337369
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  51337307 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 51337369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 28143896 - 28143836
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 293  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||    
T  28143896 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 28143836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 373
Target Start/End: Original strand, 36213451 - 36213519
Alignment:
Q  304 tttttaaggtggagggtgtatgtagaaatatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    ||||||||||| ||||||||| |||||||||||||||||||| |  ||||||||| |||||| |||||||    
T  36213451 tttttaaggtgtagggtgtatatagaaatatttggattttggag-gtatatatagtaaaattatctgaaa 36213519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 38052595 - 38052638
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctaggg 276  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  38052595 cagggccggccctagg-cataggccgcgagtgcgacggcctaggg 38052638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 29283432 - 29283371
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 293  Q
    ||||||||||||||| | ||||||||| | |||||||||||||||||||||| || |||||||    
T  29283432 gcagggccggccctatg-cataggccgtgggtgcgacggcctagggcccttgccggtaggggg 29283371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 7414188 - 7414127
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 293  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||| |||| || || |||||||    
T  7414188 cagggccggtcctaggggataggccacgagtgcgacggcctagagcccatgccggtaggggg 7414127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 7460269 - 7460208
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 293  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||| |||| || || |||||||    
T  7460269 cagggccggtcctaggggataggccacgagtgcgacggcctagagcccatgccggtaggggg 7460208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 17648019 - 17647959
Alignment:
Q  234 gggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||| ||||||||| ||||||||||||||| |||||||| |  |||||||||    
T  17648019 gggccggccctagg-cataggccgggagtgcgacggcctacggcccttgcccgtagggggcc 17647959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 373
Target Start/End: Complemental strand, 41509618 - 41509512
Alignment:
Q  265 gacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaatatttggattttggggaatatatatagcaaaat 364  Q
    ||||||||||||||| || || |||||| || || ||| |||||||||||| |||||||| ||||||||||||| ||||| || || | ||||| || ||    
T  41509618 gacggcctagggcccatgccggtaggggccctaatttt-tttttaaggtgg-gggtgtatatagaaatatttggtttttgcgggatgtgtatagaaatat 41509521  T
Q  365 tctctgaaa 373  Q
    || ||||||    
T  41509520 tcactgaaa 41509512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 337
Target Start/End: Complemental strand, 10373831 - 10373726
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgt-ttttaaggtggagggtgtatgtagaa 330  Q
    ||||||||||||| || ||||||||  | |||||||| |||||||||| || || ||||||||   ||||||| ||||| |||||  ||||||| |||||    
T  10373831 cagggccggccctcgg-cataggcctggggtgcgacgacctagggcccatgccggtagggggctctaatttgttttttatggtgggaggtgtatatagaa 10373733  T
Q  331 atatttg 337  Q
    |||||||    
T  10373732 atatttg 10373726  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 52458730 - 52458795
Alignment:
Q  304 tttttaaggtggagggtgtatgtagaaatatttggattttggggaatatatatagcaaaattctct 369  Q
    ||||||||||| ||  ||||| ||||||||||| | |||||||   ||||||||||||||||||||    
T  52458730 tttttaaggtgcagactgtatatagaaatattttgtttttgggagctatatatagcaaaattctct 52458795  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 52459987 - 52460052
Alignment:
Q  304 tttttaaggtggagggtgtatgtagaaatatttggattttggggaatatatatagcaaaattctct 369  Q
    ||||||||||| ||  ||||| ||||||||||||  |||||||   ||||||||||||||||||||    
T  52459987 tttttaaggtgcagactgtatatagaaatatttgatttttgggagctatatatagcaaaattctct 52460052  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 3665837 - 3665781
Alignment:
Q  317 gggtgtatgtagaaatatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||| ||||||||||||| |||||||   |||||||| |||| ||||||||||    
T  3665837 gggtgtatatagaaatatttggtttttgggaggtatatataacaaagttctctgaaa 3665781  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 336
Target Start/End: Complemental strand, 42514139 - 42514039
Alignment:
Q  233 agggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaat 332  Q
    |||||||| |||||| ||||||| | | || |||||||||| | |||||| |||||||||||| ||  || |||||| ||||| || ||||| |||||||    
T  42514139 agggccggtcctaggccataggcgggg-gttcgacggcctatgacccttgccgatagggggcccaa--ttttttttatggtgggggatgtatatagaaat 42514043  T
Q  333 attt 336  Q
    ||||    
T  42514042 attt 42514039  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 56367332 - 56367285
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    ||||||||||||||||| |||||||||   |||||||||||||||||||    
T  56367332 gcagggccggccctagg-cataggccggaggtgcgacggcctagggccc 56367285  T

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Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 233 - 373
Target Start/End: Original strand, 18674997 - 18675137
Alignment:
Q  233 agggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaat 332  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||| | ||||||||||||||||||| | |||||| |||||||    
T  18674997 agggccggccctaaggcataggccgcgggtgcgacggcctagggcccttgccggtagggggtccaaatttgtttttaaggtggggagtgtatatagaaat 18675096  T
Q  333 atttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    ||||  |||||||||||||||||||||||| ||||||||||    
T  18675097 atttaaattttggggaatatatatagcaaacttctctgaaa 18675137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 230 - 373
Target Start/End: Original strand, 20990098 - 20990238
Alignment:
Q  230 ggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtaga 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||  || ||||||| || | |||||| | ||||    
T  20990098 ggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgccggtaggggcccaaa--ttttttttaatgtag-gggtgtttataga 20990194  T
Q  330 aatatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||||| |||  ||||||||| || |||||||||||    
T  20990195 aatatttggattttagggggtatatatagtaacattctctgaaa 20990238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 370
Target Start/End: Original strand, 21442392 - 21442532
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt--ggagggtgtatgtag 328  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| || || || ||||||||| |||||| |||||||| |  ||  ||||||| |||    
T  21442392 gcagggccggccctagagcataggccgcgagtgcgacggcctagggtccatgccggtagggggcccaaattt-tttttaagataagggaggtgtatatag 21442490  T
Q  329 aaatatttggattttggggaatatatatagcaaaattctctg 370  Q
    |||||||||||||| |||| |||||||||| || ||||||||    
T  21442491 aaatatttggatttcgggggatatatatagaaacattctctg 21442532  T

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Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 369
Target Start/End: Original strand, 1603013 - 1603150
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg-ccaaaatttgtttttaaggt-ggagggtgtatgtaga 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||    | ||||||||  | |||||||| ||||    
T  1603013 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggtccaaaa--aatctttaaggtaagggggtgtatataga 1603110  T
Q  330 aatatttggattttggggaatatatatagcaaaattctct 369  Q
    ||||||||||||| |||| |||||||||| ||||||||||    
T  1603111 aatatttggatttcgggggatatatatagaaaaattctct 1603150  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 232 - 370
Target Start/End: Original strand, 34043181 - 34043319
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||| |||  | ||||||||||  | | |||||| |||||    
T  34043181 cagggccggccctagggcataggccgcgagtgtgacggcctagggcccatgccggtagggggcccaaaaat-tttttaaggtaagggagtgtatatagaa 34043279  T
Q  331 atatttggattttggggaatatatatagcaaaattctctg 370  Q
    |||||||||||| ||||  ||||||||| |||||||||||    
T  34043280 atatttggatttcgggggttatatatagaaaaattctctg 34043319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 347
Target Start/End: Original strand, 1131415 - 1131530
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaa 330  Q
    ||||||||||||||||||||||||||  |||||||||||||||| ||||||| || ||||||||| |||      |||||| |||||||||||| |||||    
T  1131415 gcagggccggccctagggcataggccaagagtgcgacggcctagagcccttgccggtagggggcccaaa-aaaaatttaagctggagggtgtatatagaa 1131513  T
Q  331 atatttggattttgggg 347  Q
    |||||||||| ||||||    
T  1131514 atatttggatattgggg 1131530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 1422674 - 1422739
Alignment:
Q  308 taaggtggagggtgtatgtagaaatatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||| |||||||| |||||||||||||||||||||||  |||||||||||||||||||||||    
T  1422674 taaggtggggggtgtatttagaaatatttggattttggggataatatatagcaaaattctctgaaa 1422739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 22012575 - 22012514
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||    
T  22012575 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggg 22012514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 14677385 - 14677448
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||||    
T  14677385 gcagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 14677448  T

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Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 369
Target Start/End: Original strand, 15059810 - 15059949
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg-ccaaaatttgtttttaaggtggagg-gtgtatgtag 328  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||| ||||| ||||||| |||||| |    ||| || ||| || |||||| |||    
T  15059810 gcagggccggccctagggcatatgccgggagtgcaacggcctagggcccatgtcggtagggggtccaaaaataaaattt-agctgggggtgtgtatatag 15059908  T
Q  329 aaatatttggattttggggaatatatatagcaaaattctct 369  Q
    |||||||||| |||| |||  ||||||||| ||||||||||    
T  15059909 aaatatttggttttttggggttatatatagtaaaattctct 15059949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 31475219 - 31475173
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  31475219 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 31475173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 34040465 - 34040421
Alignment:
Q  235 ggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    ||||||||||||||||||| || ||||||||||||||||||||||    
T  34040465 ggccggccctagggcatagaccacgagtgcgacggcctagggccc 34040421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 33517040 - 33516978
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||||| || || |||||||||    
T  33517040 cagggccggccctagg-cataggccacgagtgcaacggcctagggcccatgccggtagggggcc 33516978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 9534376 - 9534331
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcc 278  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  9534376 cagggccggccctagg-cataggccgcgagtgcgacggcctaaggcc 9534331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 26817080 - 26817142
Alignment:
Q  306 tttaaggtggagggtgtatgtagaaatatttggattttggggaatatatatagcaaaattctctg 370  Q
    |||||||||| |||||||| |||||||||||| |||||||||  || ||||||||||||||||||    
T  26817080 tttaaggtgg-gggtgtatatagaaatatttg-attttggggggtaaatatagcaaaattctctg 26817142  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 362
Target Start/End: Original strand, 22524548 - 22524648
Alignment:
Q  262 tgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaatatttggattttggggaatatatatagcaa 361  Q
    |||||||||||||||||| || |  ||||||| |  || || ||||| | || |||||||||| ||||||||||||| |||| |||  | ||||||||||    
T  22524548 tgcgacggcctagggcccatgcctttagggggtcctaagtttttttttatgtagagggtgtatatagaaatatttggtttttagggggtttatatagcaa 22524647  T
Q  362 a 362  Q
    |    
T  22524648 a 22524648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 230 - 373
Target Start/End: Complemental strand, 7973444 - 7973301
Alignment:
Q  230 ggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtaga 329  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || || ||||||||| |||  | ||||||||||| |||| |||| ||||    
T  7973444 ggcagggccggccctagggcataggccacgagtgcgacggcctagggcccatgccggtagggggcccaaaagtttttttaaggtgtagggggtatataga 7973345  T
Q  330 aatatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  7973344 aatatttggattttggggggtatatatagcaaaattctctgaaa 7973301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 233 - 373
Target Start/End: Original strand, 39905874 - 39906012
Alignment:
Q  233 agggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaat 332  Q
    ||||| ||||||| |||||||||||||||| |||||||||| |||||||  || ||||||||| || ||| |||||||||||| ||||||||||||||||    
T  39905874 agggctggccctacggcataggccgcgagttcgacggcctacggcccttaccggtagggggcccaatttt-tttttaaggtgg-gggtgtatgtagaaat 39905971  T
Q  333 atttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||||||  |||||||||||| |||||||||||    
T  39905972 atttggattttggggggtatatatagcaacattctctgaaa 39906012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 232 - 370
Target Start/End: Original strand, 1981234 - 1981372
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||  |||||| ||||||||||  | |||||||| |||||    
T  1981234 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggctcaaattt-tttttaaggtaagggggtgtatatagaa 1981332  T
Q  331 atatttggattttggggaatatatatagcaaaattctctg 370  Q
    ||||||||||||  |||||||||||||| || ||||||||    
T  1981333 atatttggatttctgggaatatatatagaaacattctctg 1981372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 373
Target Start/End: Original strand, 40971089 - 40971229
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||  | ||||||| | || ||| |||||||||| | |||| ||| |||| |    
T  40971089 cagggccggccctagggcataggccgcgagtgcgatggcctagggcccttgctggtagggggtccaattttttttttaaggtag-gggtatatatagata 40971187  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||| |||  ||||||||| ||||||||||||||    
T  40971188 tatttggattttagggggtatatatagtaaaattctctgaaa 40971229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 232 - 342
Target Start/End: Original strand, 3762339 - 3762450
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| || ||| ||||||||||    |||||||| |||||    
T  3762339 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaattttttttttaaggtaacggggtgtatatagaa 3762438  T
Q  331 atatttggattt 342  Q
    ||||||||||||    
T  3762439 atatttggattt 3762450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 369
Target Start/End: Original strand, 31597165 - 31597301
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||  |||||| ||||||||||  | ||||| || |||||    
T  31597165 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccgttagggggctcaaattt-tttttaaggtaagggggtgcatatagaa 31597262  T
Q  331 atatttggattttggggaatatatatagcaaaattctct 369  Q
    |||||||||||| |||   ||||||||| | ||||||||    
T  31597263 atatttggatttcgggaggtatatatagaagaattctct 31597301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 45117137 - 45117208
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg-ccaaaattt 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||    
T  45117137 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggtccaaaattt 45117208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 362
Target Start/End: Complemental strand, 4432531 - 4432402
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| ||||| || | ||||||| |||     ||||||| ||| |||||||| || |||    
T  4432531 cagggccggcccaagggcataggccgcaattgcgacggcctagggtccttgccggtggggggcccaaa-aaacttttaagatggggggtgtatataaaaa 4432433  T
Q  332 tatttggattttggggaatatatatagcaaa 362  Q
    ||||||||||||||||  |||||||||||||    
T  4432432 tatttggattttggggggtatatatagcaaa 4432402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 287 - 371
Target Start/End: Original strand, 18327012 - 18327096
Alignment:
Q  287 tagggggccaaaatttgtttttaaggtggagggtgtatgtagaaatatttggattttggggaatatatatagcaaaattctctga 371  Q
    ||||||||| |||||| ||||| |||||| |||||||| |||||||| |||||||||||||  | ||||||||||||||||||||    
T  18327012 tagggggcccaaattttttttttaggtggggggtgtatatagaaatagttggattttggggtgtctatatagcaaaattctctga 18327096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 299
Target Start/End: Original strand, 16729378 - 16729445
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaa 299  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||| ||||||    
T  16729378 cagggccggccctagggcataggtcacgagtgcgacggcctagggcccttgccggtaggggcccaaaa 16729445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 7264091 - 7264041
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttg 282  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  7264091 cagggccggccctagggcataggccacgagtgcgacggtctagggcccttg 7264041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 6927983 - 6927907
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgttttta 309  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||  ||||| ||||||    
T  6927983 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggccctaattttttttta 6927907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 3509845 - 3509909
Alignment:
Q  230 ggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||  |||||||||    
T  3509845 ggcagggtcggccctagg-cataggccgcgagtgcgacggcctaggacccatgtctgtagggggcc 3509909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 11995159 - 11995097
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| |||||||| ||||||||| |||||||||||| || || |||||||||    
T  11995159 cagggccggccctagg-cataggccacgagtgcgatggcctagggcccatgccggtagggggcc 11995097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 9410013 - 9409872
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg-ccaaaatttgtttttaaggtggagggtgtatgtagaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| || ||||||||||| |||| |||| |||||    
T  9410013 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgtcggtagggggtccaaaagtt-tttttaaggtgtagggggtatatagaa 9409915  T
Q  331 atatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||||||||  |||||||||||||||| |||||||    
T  9409914 atatttggattttggggggtatatatagcaaaattatctgaaa 9409872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 232 - 373
Target Start/End: Original strand, 42879239 - 42879379
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||||| || ||||||||||| ||||||||| ||||||    
T  42879239 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggcccaaaagtt-tttttaaggtgtagggtgtatatagaaa 42879337  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||| |||  |||||||||||||||| |||||||    
T  42879338 tatttggattttagggggtatatatagcaaaattatctgaaa 42879379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 230 - 373
Target Start/End: Complemental strand, 39537847 - 39537707
Alignment:
Q  230 ggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtaga 329  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||||| |||||| ||||||||| || ||||||||||| |    
T  39537847 ggcagggccggccctagggcataggccgcaagtgcgacggcctagggcctttgccggtagggggcccaaattt-tttttaaggagg-gggtgtatgtaaa 39537750  T
Q  330 aatatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  39537749 aatatttggattttgggg-gtatatatagcaaaattctctgaaa 39537707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 232 - 373
Target Start/End: Original strand, 13490034 - 13490173
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||| || |||||||||  ||||| |||||||| ||| |||||||| || |||    
T  13490034 cagggccggccctaagccataggccgcgagtgcgacggcctagggcccttgccggtagggggcc-caatttttttttaagatgg-gggtgtatataaaaa 13490131  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    ||||||||||||||||   |||||||||||||||| ||||||    
T  13490132 tatttggattttggggggaatatatagcaaaattcactgaaa 13490173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 369
Target Start/End: Original strand, 2676608 - 2676745
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||    | ||||||||  | |||||||| |||||    
T  2676608 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaa-aaatctttaaggtaagggggtgtatatagaa 2676706  T
Q  331 atatttggattttggggaatatatatagcaaaattctct 369  Q
    |||||||||||| |||| |||||||||| ||||||||||    
T  2676707 atatttggatttcgggggatatatatagaaaaattctct 2676745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 369
Target Start/End: Complemental strand, 13383062 - 13382925
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||| ||| || ||||||||||  | ||||| || |||||    
T  13383062 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccgttagggggcccaaaattttttttaaggtaagggggtgcatatagaa 13382964  T
Q  331 atatttggattttggggaatatatatagcaaaattctct 369  Q
    |||||||||||||| || |||||||||| | ||||||||    
T  13382963 atatttggattttgagggatatatatagaagaattctct 13382925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 5579066 - 5579003
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||| || |||||||||    
T  5579066 cagggccggccctagggcataggccacgagtgcgacgggctagggcccttgccggtagggggcc 5579003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 18888714 - 18888773
Alignment:
Q  235 ggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||    
T  18888714 ggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggc 18888773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 38490701 - 38490764
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  38490701 gcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 38490764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 41869418 - 41869464
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  41869418 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 41869464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 7849977 - 7850036
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggg 292  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || ||||||    
T  7849977 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 7850036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 16040646 - 16040505
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatag-ggggccaaaatttgtttttaaggtggagggtgtatgtagaa 330  Q
    |||| |||||||||||||||||| |  | || |||||||||| | | | ||||| |||  || |||||| |||||||||||||||  ||||||  || ||    
T  16040646 caggtccggccctagggcataggtcaggggttcgacggcctatgtctcatgtcggtagacggcccaaaagttgtttttaaggtgggcggtgtaaatataa 16040547  T
Q  331 atatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||| ||||||||  ||||| ||||||||| ||||||||    
T  16040546 atatttggtttttgggg-gtatatgtagcaaaatgctctgaaa 16040505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 6950353 - 6950399
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    ||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  6950353 cagggccggtcctagg-cataggccacgagtgcgacggcctagggccc 6950399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 43324167 - 43324121
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||||||||||| ||||||||| | |||||||||||||||||||    
T  43324167 cagggccggccctagg-cataggccgggggtgcgacggcctagggccc 43324121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 14652182 - 14652123
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggg 292  Q
    ||||||||| |||||| |||||||| ||||||||| |||||||||||| || || ||||||    
T  14652182 cagggccggtcctagg-cataggccacgagtgcgatggcctagggcccatgccggtagggg 14652123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 33922751 - 33922691
Alignment:
Q  233 agggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 293  Q
    ||||||||||||||| ||||||||| | || ||||||||||||| ||| | || |||||||    
T  33922751 agggccggccctaggccataggccgggggtacgacggcctagggtcctagccggtaggggg 33922691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 232 - 373
Target Start/End: Original strand, 18667012 - 18667152
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| |||||| |||||||||| | |||||| | ||||||    
T  18667012 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgccggtagggggcccaaatttttttttaaggtag-gggtgtttatagaaa 18667110  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||| |||  ||||||||| || |||||||||||    
T  18667111 tatttggattttagggggtatatatagtaacattctctgaaa 18667152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 232 - 373
Target Start/End: Original strand, 13753759 - 13753899
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||  || ||| |||||||||| | |||||| | |||||     
T  13753759 cagggccggccctagggcataggccgcgagtgcgacagcctagggcccttgccggtagggggcggaattttttttttaaggtag-gggtgtttatagaag 13753857  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||| |||  ||||||||| ||||||||||||||    
T  13753858 tatttggatttttgggggtatatatagtaaaattctctgaaa 13753899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 231 - 347
Target Start/End: Original strand, 4539511 - 4539627
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtaga 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||| |||||| ||||||||||  | |||||||| ||||    
T  4539511 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccgggagggggcccaaattt-tttttaaggtaagggggtgtatataga 4539609  T
Q  330 aatatttggattttgggg 347  Q
    ||||||||||||| ||||    
T  4539610 aatatttggatttagggg 4539627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 232 - 370
Target Start/End: Complemental strand, 8389760 - 8389622
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||    | ||||||||  | |||||||| |||||    
T  8389760 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaa-aaatctttaaggtaagggggtgtatatagaa 8389662  T
Q  331 atatttggattttggggaatatatatagcaaaattctctg 370  Q
    |||||||||||| |||| |||| ||||| |||||||||||    
T  8389661 atatttggatttcgggggatatgtatagaaaaattctctg 8389622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 373
Target Start/End: Original strand, 43823964 - 43824110
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaa----aatttgtttttaaggtggag-ggtgtatgt 326  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| || || ||||||||| |      ||| |||||||||||| | ||||||| |    
T  43823964 cagggccggtcctagggcataggccacgagtgcgacggcctagggcccatgccggtagggggcccagttttttttttttttaaggtggggaggtgtatat 43824063  T
Q  327 agaaatatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||||||||||||  ||||||||| |  |||||||||||    
T  43824064 agaaatatttggattttggggggtatatatagaagtattctctgaaa 43824110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 373
Target Start/End: Complemental strand, 20395243 - 20395107
Alignment:
Q  235 ggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg-ccaaaatttgtttttaaggtggagggtgtatgtagaaata 333  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||||| || ||||||| ||||||    |||  ||| |||||||||||| ||||||||    
T  20395243 ggccagccctagggcataggccacgagtgcgacggcctaggtcccttgccggtagggggtccaaaaaaaattt--aagctggagggtgtatatagaaata 20395146  T
Q  334 tttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    ||||||||||||||  ||| |||||||| |||||||||||    
T  20395145 tttggattttgggg-gtatgtatagcaacattctctgaaa 20395107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 232 - 369
Target Start/End: Complemental strand, 31072988 - 31072850
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaa--atttgtttttaaggtggagggtgtatgtaga 329  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |  || ||||||||| ||   ||| ||||||||||   |||||||| ||||    
T  31072988 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatcccggtagggggcccaattttttttttttaaggtaaggggtgtatataga 31072890  T
Q  330 aatatttggattttggggaatatatatagcaaaattctct 369  Q
    |||||||||||||||| |  ||||||||| || |||||||    
T  31072889 aatatttggattttggagggtatatatagaaacattctct 31072850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 369
Target Start/End: Complemental strand, 35478436 - 35478301
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| ||||||  | ||||||||| |||      |||||| | |||||||| | ||||||    
T  35478436 cagggccagccctagggcataggccgcgagtgcgacggactaggacccttgctggtagggggcccaaa-aaaaatttaagct-gagggtgtttatagaaa 35478339  T
Q  332 tatttggattttggggaatatatatagcaaaattctct 369  Q
    |||||||||||| |||  ||||||||| ||||||||||    
T  35478338 tatttggattttagggggtatatatagtaaaattctct 35478301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 373
Target Start/End: Original strand, 44733170 - 44733309
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||||   | ||||||| |  ||||| |||| |||||   |||  ||| || |||    
T  44733170 cagggccggccctagggcataggtcgggagtgcgacggcctaaggcccttacagttaggggggcccaattt-ttttgaaggtttcggggttatataaaaa 44733268  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    ||||||| |||||||| ||||||| | |||||||||||||||    
T  44733269 tatttggtttttgggg-atatatagaacaaaattctctgaaa 44733309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 48238115 - 48238178
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  48238115 gcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 48238178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 15680168 - 15680122
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  15680168 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 15680122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 48636360 - 48636422
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  48636360 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 48636422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 8069234 - 8069294
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 293  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||    
T  8069234 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 8069294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 12379302 - 12379349
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  12379302 gcagggccggcccaagg-cataggccgcgagtgcgacggcctagggccc 12379349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 19312388 - 19312326
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| ||||||||| |||||||||||||||||| || || || |||||||||    
T  19312388 cagggccggccctagg-cataggccgtgagtgcgacggcctagggtccatgccggtagggggcc 19312326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 45446491 - 45446446
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggc 277  Q
    |||||||||||||||| ||||||||||||||| |||| ||||||||    
T  45446491 cagggccggccctaggccataggccgcgagtgtgacgacctagggc 45446446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 135357 - 135403
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||||||||||| |||||| || |||||||||||||||||||||    
T  135357 cagggccggccctagg-cataggtcgggagtgcgacggcctagggccc 135403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 37549237 - 37549188
Alignment:
Q  229 aggcagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    ||||||||||||||||||| ||||||||  | |||||||||||||||||||    
T  37549237 aggcagggccggccctagg-cataggccaggggtgcgacggcctagggccc 37549188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 6189830 - 6189798
Alignment:
Q  247 ggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||||| ||||||||||||||||||||||    
T  6189830 ggcataggccacgagtgcgacggcctagggccc 6189798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 89517 - 89379
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| |||||||| ||||  |||||| || |||    
T  89517 cagggccggccctaaggcataggccccgagtgcgacggcctagggcccttgtcggtagggggcccaaattt-tttttaagatgga--gtgtatataaaaa 89421  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||||||   ||||||||||||||||| ||||||    
T  89420 tatttggattttgggaggtatatatagcaaaattcactgaaa 89379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 88091 - 87952
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||  || ||||||||| |||   |  |||||| ||| | |||||| || |||    
T  88091 cagggccggcactaaggcataggccgcgagtgcgacggcctagggccctttccggtagggggcccaaa--agaatttaagatggggagtgtatataaaaa 87994  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    ||||||||||||||||  ||||||||||||||||| ||||||    
T  87993 tatttggattttggggggtatatatagcaaaattcactgaaa 87952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 88567 - 88428
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||||||  || ||||||||| |||   |  |||||| ||| |||||||| || |||    
T  88567 cagggccggcactaaggtataggccgcgagtgcgacggcctagggccctttccggtagggggcccaaaa--gaatttaagatggggggtgtatataaaaa 88470  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    ||||||||||||||||  ||||||||||||||||| ||||||    
T  88469 tatttggattttggggggtatatatagcaaaattcactgaaa 88428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 89043 - 88904
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||||||  || ||||||||| |||   |  |||||| ||| |||||||| || |||    
T  89043 cagggccggcactaaggtataggccgcgagtgcgacggcctagggccctttccggtagggggcccaaaa--gaatttaagatggggggtgtatataaaaa 88946  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    ||||||||||||||||  ||||||||||||||||| ||||||    
T  88945 tatttggattttggggggtatatatagcaaaattcactgaaa 88904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 232 - 366
Target Start/End: Complemental strand, 87617 - 87486
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    |||||||||||||| ||||||||  |||||||||||||| ||||||||||  || |||||  ||||||   |  |||||| ||| |||||||| || |||    
T  87617 cagggccggccctaaggcatagggtgcgagtgcgacggcgtagggccctttccggtagggtcccaaaa---gaatttaagatggggggtgtatataaaaa 87521  T
Q  332 tatttggattttggggaatatatatagcaaaattc 366  Q
    |||||||||||||||| ||||||||||||||||||    
T  87520 tatttggattttgggggatatatatagcaaaattc 87486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 231 - 369
Target Start/End: Original strand, 19685438 - 19685576
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtaga 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||| |||||| ||||||||||  | |||||||| ||||    
T  19685438 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggaggcccaaattt-tttttaaggtaagggggtgtatataga 19685536  T
Q  330 aatatttggattttggggaatatatatagcaaaattctct 369  Q
    ||||||||||||||||||  ||||||||| ||| ||||||    
T  19685537 aatatttggattttggggggtatatatagaaaatttctct 19685576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 232 - 373
Target Start/End: Original strand, 2553702 - 2553841
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| || || |||||| || ||| |||||||||| | |||| ||| ||||||    
T  2553702 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgccggta-ggggcccaattttttttttaaggtag-gggtatatatagaaa 2553799  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||| |||  ||||||||| ||||||||||||||    
T  2553800 tatttggattttagggggtatatatagtaaaattctctgaaa 2553841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 232 - 368
Target Start/End: Complemental strand, 33015654 - 33015518
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||| ||| || ||||||||||  | |||||||| |||||    
T  33015654 cagggccggccctagggcataggccgcgagtgtgacggcctagggcccatgccggtagggggcccaaaatt-tttttaaggtaagggggtgtatatagaa 33015556  T
Q  331 atatttggattttggggaatatatatagcaaaattctc 368  Q
    |||||||||||| |||| |||||||||| |||||||||    
T  33015555 atatttggatttcgggggatatatatagaaaaattctc 33015518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 41826422 - 41826283
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||| || || |||||| || ||| |||||||||| | |||| ||| ||||||    
T  41826422 cagggccggccctagggcataggccacgagtacgacggcctagggcccttgccggta-ggggcccaattttttttttaaggtag-gggtatatatagaaa 41826325  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||| |||  ||||||||| ||||||||||||||    
T  41826324 tatttggattttagggggtatatatagtaaaattctctgaaa 41826283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 22576442 - 22576302
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||||| || || ||||||||| |||  | ||||||| |||| |||||||| ||||||    
T  22576442 cagggccagccctagggcataggccatgagtgcgacggcctagggcccatgccggtagggggcccaaaagtttttttaatgtgg-gggtgtatatagaaa 22576344  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||  |||  || |||||||||||||||||||||    
T  22576343 tatttggatttgtgggggtacatatagcaaaattctctgaaa 22576302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 44314502 - 44314441
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||    
T  44314502 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggg 44314441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 44322681 - 44322620
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||    
T  44322681 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggg 44322620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 370
Target Start/End: Original strand, 6221022 - 6221166
Alignment:
Q  226 ttgaggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt--ggagggtgta 323  Q
    |||| |||| ||||||||||| |||||||||||||||||||||||||| ||||  || || ||||||||| |||    | ||||||||  ||| ||||||    
T  6221022 ttgaagcagagccggccctagagcataggccgcgagtgcgacggcctaaggcctatgccggtagggggcccaaa-aaatctttaaggtaagga-ggtgta 6221119  T
Q  324 tgtagaaatatttggattttggggaatatatatagcaaaattctctg 370  Q
    | ||||| ||||||||||| |||| |||||||||| |||||||||||    
T  6221120 tatagaagtatttggatttcgggggatatatatagaaaaattctctg 6221166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 373
Target Start/End: Complemental strand, 40709951 - 40709826
Alignment:
Q  243 ctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaatatttggattt 342  Q
    ||||||||||||||||||||||||||||||||||||| || || |||||| ||   |||| |||||||| ||  |||||||| ||||||||||||  ||     
T  40709951 ctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggccc---atttttttttaagatg--gggtgtatatagaaatatttgagtta 40709857  T
Q  343 tggggaatatatatagcaaaattctctgaaa 373  Q
    ||||   ||||||||| |||||||| |||||    
T  40709856 tgggaggtatatatagtaaaattctttgaaa 40709826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 373
Target Start/End: Complemental strand, 11199735 - 11199603
Alignment:
Q  235 ggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaatat 334  Q
    |||| |||||||||||||||| | |||| ||||| || |||||| | | || ||||||||| || |||  ||| |||||||  ||||||| |||||||||    
T  11199735 ggccagccctagggcataggcggggagtacgacgaccaagggccat-gccggtagggggcccaatttt--tttaaaggtgg--ggtgtatatagaaatat 11199641  T
Q  335 ttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  11199640 ttggattttgggg-gtatatatagcaaaattctctgaaa 11199603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 2565275 - 2565337
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||||    
T  2565275 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 2565337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 90776 - 90713
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  90776 gcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 90713  T

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Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 7880774 - 7880699
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgttttt 308  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||  ||||| |||||    
T  7880774 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccgttagggggccctaattttttttt 7880699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 7443842 - 7443938
Alignment:
Q  268 ggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaatatttggattttggggaatatatatagcaaaattc 366  Q
    ||||||||||||||  || ||||||||| || |||  ||||||| ||| |||||||| || ||||||||||||||||| |  |||||||||||||||||    
T  7443842 ggcctagggccctttccggtagggggcccaatttt--ttttaagatggggggtgtatataaaaatatttggattttggtgggtatatatagcaaaattc 7443938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 18583004 - 18582958
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  18583004 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 18582958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 18781623 - 18781561
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  18781623 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 18781561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 45277927 - 45277865
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  45277927 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 45277865  T

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Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 38696797 - 38696844
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  38696797 gcagggccggccctagg-cataggctgcgagtgcgacggcctagggccc 38696844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 14903684 - 14903743
Alignment:
Q  236 gccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||| ||||||||| | ||||||||||||| |||||||| || |||||||||    
T  14903684 gccggccctaggccataggccgggggtgcgacggcctatggcccttgccggtagggggcc 14903743  T

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Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 33054399 - 33054457
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggg 291  Q
    |||||||||||||||| |||||| || | |||||||||||||||||||||| ||||||||    
T  33054399 cagggccggccctaggccataggtcggg-gtgcgacggcctagggcccttgccgataggg 33054457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 27862179 - 27862124
Alignment:
Q  318 ggtgtatgtagaaatatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    ||||||| || |||||||||||||||||||  ||||||||| ||||||| ||||||    
T  27862179 ggtgtatataaaaatatttggattttggggggtatatatagtaaaattcactgaaa 27862124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 19674457 - 19674517
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 293  Q
    |||||||||||||||| |||||| | | |||||||||||||||||||| || || |||||||    
T  19674457 cagggccggccctagg-cataggtcacaagtgcgacggcctagggcccatgccggtaggggg 19674517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 24484160 - 24484227
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaat 300  Q
    |||||||||||||||| ||||| ||| | ||||||||||||||||||| || |  ||||||||| ||||    
T  24484160 cagggccggccctagg-catagtccgggggtgcgacggcctagggcccatgccattagggggcccaaat 24484227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 25472706 - 25472663
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctaggg 276  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||    
T  25472706 cagggccggccctagg-cataggccgtgagtgcaacggcctaggg 25472663  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 230 - 369
Target Start/End: Complemental strand, 53077432 - 53077291
Alignment:
Q  230 ggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt--ggagggtgtatgta 327  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| ||| |  ||||||||||  || |||||||| ||    
T  53077432 ggcagggccggccctagggcataggccacgagtgcgacggcctagggcccatgccgatagggggcccaaaataatttttaaggtaaggggggtgtatata 53077333  T
Q  328 gaaatatttggattttggggaatatatatagcaaaattctct 369  Q
    ||||||||||||||| || |  ||||||||| ||||||||||    
T  53077332 gaaatatttggatttcggagggtatatatagaaaaattctct 53077291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 232 - 370
Target Start/End: Original strand, 19156736 - 19156874
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||    | ||||||||  | |||||||| |||||    
T  19156736 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaa-aaatctttaaggtaagggggtgtatatagaa 19156834  T
Q  331 atatttggattttggggaatatatatagcaaaattctctg 370  Q
    |||||||||||| |||| |||||||||| |||||||||||    
T  19156835 atatttggatttcgggggatatatatagaaaaattctctg 19156874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 373
Target Start/End: Original strand, 52447788 - 52447926
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||| ||||||| || ||||||||| |||||  |||||||||| | |||||| | ||||||    
T  52447788 cagggacggccctagggcataggccgcaagtgcgacgacctagagcccttgccggtagggggcccaaatt--tttttaaggtag-gggtgtttatagaaa 52447884  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||| |||  ||||||||| ||||||||||||||    
T  52447885 tatttggattttagggggtatatatagtaaaattctctgaaa 52447926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 370
Target Start/End: Original strand, 15760509 - 15760640
Alignment:
Q  239 ggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaaatatttg 337  Q
    |||||| |||||||||||||||||||||||||||||||||| || || |||||| |||||| |||||||||||||  | |||||||| ||||||||||||    
T  15760509 ggcccttgggcataggccgcgagtgcgacggcctagggcccatgccggtaggggcccaaaa-ttgtttttaaggtaagggggtgtatatagaaatatttg 15760607  T
Q  338 gattttggggaatatatatagcaaaattctctg 370  Q
    ||||| ||||  ||| ||||| || ||||||||    
T  15760608 gatttcggggggtatgtatagaaatattctctg 15760640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 356
Target Start/End: Complemental strand, 27941976 - 27941852
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||| |||   |  ||||||||  | |||||||| |||||    
T  27941976 cagggccggccctagggcataagccgcgagtgcgacggcctagggcccatgccggtagggggcccaaa-aagaatttaaggtaagggggtgtatatagaa 27941878  T
Q  331 atatttggattttggggaatatatat 356  Q
    |||||||||||| ||||  |||||||    
T  27941877 atatttggatttcggggggtatatat 27941852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 25071278 - 25071325
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25071278 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 25071325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 6025206 - 6025144
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||||    
T  6025206 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 6025144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 10994581 - 10994534
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  10994581 cagggccggccctagggcataggccgcgagtgcgacggtctagggccc 10994534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 23045322 - 23045260
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  23045322 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 23045260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 31885395 - 31885333
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  31885395 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 31885333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 36640723 - 36640769
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  36640723 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 36640769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 1420253 - 1420207
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  1420253 cagggccggccctagg-cataggctgcgagtgcgacggcctagggccc 1420207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 22917793 - 22917839
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  22917793 cagggccggccctagg-cataggccgcgagtgtgacggcctagggccc 22917839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 30376917 - 30376963
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  30376917 cagggccgaccctagg-cataggccgcgagtgcgacggcctagggccc 30376963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 368
Target Start/End: Complemental strand, 24928263 - 24928166
Alignment:
Q  270 cctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaatatttggattttggggaatatatatagcaaaattctc 368  Q
    |||||||||||||  | |||||||   |||||| ||||||| || | |||||||| |||||||||||||||||| |||  ||||||||| |||||||||    
T  24928263 cctagggcccttgctggtagggggatcaaatttttttttaaagtag-gggtgtatatagaaatatttggattttagggggtatatatagtaaaattctc 24928166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 1424344 - 1424406
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    ||||||||||||||||  |||||||| | ||||||||||||||||||| || || |||||||||    
T  1424344 cagggccggccctaggt-ataggccgggggtgcgacggcctagggcccatgccggtagggggcc 1424406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 9467917 - 9467871
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||||||    
T  9467917 gcagggccggccctagg-cataggccggg-gtgcgacggcctagggccc 9467871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 232 - 369
Target Start/End: Original strand, 5049096 - 5049233
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||||| |||||| |||  | |||||||| |||||    
T  5049096 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaatttttttttacggtacgggggtgtatatagaa 5049195  T
Q  331 atatttggattttggggaatatatatagcaaaattctct 369  Q
    |||||||||||| ||||  ||||||||| ||||||||||    
T  5049196 atatttggatttcgggg-gtatatatagaaaaattctct 5049233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 23664576 - 23664437
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagggtgtatgtagaaa 331  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||       ||||| |||||||||||| ||||||    
T  23664576 cagggccggccctagggcatacgccacgagtgcgacggcctagggcccttgtcggtaggggcccaaaa--aaaaattaagctggagggtgtatatagaaa 23664479  T
Q  332 tatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||||||| |||| |||| |||||||||||||||    
T  23664478 tatttggattttgggggatatgtataacaaaattctctgaaa 23664437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 369
Target Start/End: Complemental strand, 27431252 - 27431114
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    |||||| ||||||||||||||||||||||||| ||||||||||| ||| || || ||||||| | || ||| ||||||||||  |||||||||| |||||    
T  27431252 cagggctggccctagggcataggccgcgagtgtgacggcctaggacccatgccggtagggggtccaattttttttttaaggtaagagggtgtatatagaa 27431153  T
Q  331 atatttggattttggggaatatatatagcaaaattctct 369  Q
    |||||||||||| |||  |||||||||| ||||||||||    
T  27431152 atatttggatttcgggagatatatatagaaaaattctct 27431114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 231 - 369
Target Start/End: Original strand, 48999049 - 48999187
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtaga 329  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||| ||  | |||| |||| |||||| ||||||||||  | |||||||| ||||    
T  48999049 gcagggtcggccatagggcataggccgcgagtgcgacggcctagggcccatgctggtaggaggcccaaattt-tttttaaggtaagggggtgtatataga 48999147  T
Q  330 aatatttggattttggggaatatatatagcaaaattctct 369  Q
    ||||||||||||||||||  ||||||||| ||| ||||||    
T  48999148 aatatttggattttggggggtatatatagaaaagttctct 48999187  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 369
Target Start/End: Original strand, 21906020 - 21906159
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtaga 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||| |||    ||||||||||  | |||||||| || |    
T  21906020 gcagggccggccctagggcataggccgcgagtgcgacggcctagggtccatgccggtagggggcccaaaaagttttttaaggtaagggggtgtatataaa 21906119  T
Q  330 aatatttggattttggggaatatatatagcaaaattctct 369  Q
    | ||||||||||| ||||  ||||||||| ||||||||||    
T  21906120 attatttggatttcggggggtatatatagaaaaattctct 21906159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 373
Target Start/End: Original strand, 9022867 - 9022998
Alignment:
Q  241 ccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaaatatttgga 339  Q
    ||||||||||||||||| |||||||| |||||||||||| || || |||||||||||||    ||||||||||  | |||||||| |||||||||||||     
T  9022867 ccctagggcataggccgggagtgcgatggcctagggcccatgccggtagggggccaaaa-aaatttttaaggtaagggggtgtatatagaaatatttggt 9022965  T
Q  340 ttttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||| |  |||||||||| |||||||||||||    
T  9022966 ttttggag-gtatatatagcgaaattctctgaaa 9022998  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 26221340 - 26221403
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  26221340 gcagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgtcggtagggggcc 26221403  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 22070145 - 22070208
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| || || |||||||||    
T  22070145 cagggccggccctagggcataggccgtgagtgcgacggcctagggcccatgccggtagggggcc 22070208  T

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Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 370
Target Start/End: Complemental strand, 48596806 - 48596668
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg-ccaaaatttgtttttaaggt-ggagggtgtatgtaga 329  Q
    |||||||||||||| |||||||| ||||||||||||||||||| |||| || |  ||||||| ||||||     |||||||||  | |||||||| ||||    
T  48596806 cagggccggccctaaggcataggtcgcgagtgcgacggcctagagcccatgccagtagggggtccaaaa--aaattttaaggtaagggggtgtatataga 48596709  T
Q  330 aatatttggattttggggaatatatatagcaaaattctctg 370  Q
    |||||||||||||  ||| |||||||||| |||||||||||    
T  48596708 aatatttggatttcaggggatatatatagaaaaattctctg 48596668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 34307905 - 34307846
Alignment:
Q  235 ggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||||    
T  34307905 ggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccgttagggggcc 34307846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 1347167 - 1347121
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  1347167 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 1347121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 25094887 - 25094934
Alignment:
Q  326 tagaaatatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||    
T  25094887 tagaaatatttggattttgggggatatgtatagcaaaattctctgaaa 25094934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 36296358 - 36296420
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  36296358 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 36296420  T

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Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 42721895 - 42721957
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  42721895 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 42721957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 9956586 - 9956631
Alignment:
Q  233 agggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||    
T  9956586 agggccggccctagg-cacaggccgcgagtgcgacggcctagggccc 9956631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 28946260 - 28946200
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 293  Q
    |||||||||||||||| |||||||| |||||||||||||||| ||||| || || |||||||    
T  28946260 cagggccggccctagg-cataggccacgagtgcgacggcctaaggcccatgccggtaggggg 28946200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 32179238 - 32179194
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggc 277  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||    
T  32179238 cagggccggccttagg-cataggccgcgagtgcgacggcctagggc 32179194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 373
Target Start/End: Original strand, 44310173 - 44310242
Alignment:
Q  304 tttttaaggtggagggtgtatgtagaaatatttggattttggggaatatatatagcaaaattctctgaaa 373  Q
    |||||||  |||||||| ||| ||||||||||||  ||||||||   |||||||||||||||||||||||    
T  44310173 tttttaatttggagggtatatatagaaatatttgatttttggggggaatatatagcaaaattctctgaaa 44310242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 33051806 - 33051753
Alignment:
Q  228 gaggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttg 282  Q
    ||||||| |||||||||||| |||||| || ||||||||| ||||||||||||||    
T  33051806 gaggcagagccggccctagg-cataggtcgggagtgcgacagcctagggcccttg 33051753  T

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Target: scaffold0308 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 232 - 369
Target Start/End: Complemental strand, 12550 - 12414
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt-ggagggtgtatgtagaa 330  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| || || ||||||||| ||| || ||||||||||  | |||||||| |||||    
T  12550 cagggccggccctagggcataggccgcgagtgcgacgtcctagggcccatgccggtagggggcccaaaattttttttaaggtaagggggtgtatatagaa 12451  T
Q  331 atatttggattttggggaatatatatagcaaaattctct 369  Q
    |||||||||||   |||  ||||||||| ||||||||||    
T  12450 atatttggattcgtggg--tatatatagaaaaattctct 12414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 6427 - 6491
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  6427 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgccggtagggggcc 6491  T

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Target: scaffold0093 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 231 - 368
Target Start/End: Original strand, 50564 - 50707
Alignment:
Q  231 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaa-----tttgtttttaaggt-ggagggtgtat 324  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| | || || ||||||||| |||     ||| ||||||||||  | ||||||||    
T  50564 gcagggccggccctagggcataggccgcaagtgcgacggcctagggcacatgccggtagggggcccaaactttttttttttttaaggtaagggggtgtat 50663  T
Q  325 gtagaaatatttggattttggggaatatatatagcaaaattctc 368  Q
     ||||||||||||||||| ||||  ||||||||  |||||||||    
T  50664 atagaaatatttggatttcggggggtatatataaaaaaattctc 50707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 337
Target Start/End: Original strand, 40460 - 40563
Alignment:
Q  232 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtggagg-gtgtatgtagaa 330  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||| || |  |||||||||  || ||||||||||  |||||| |||||| |||||    
T  40460 cagggccggccctagg-cataggccgggggtgcgacggcctagggcccatgccattagggggccctaaattgtttttaa--tggaggcgtgtatatagaa 40556  T
Q  331 atatttg 337  Q
    |||||||    
T  40557 atatttg 40563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 3741 - 3696
Alignment:
Q  233 agggccggccctagggcataggccgcgagtgcgacggcctagggccc 279  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||||    
T  3741 agggccggccctagg-cataggccatgagtgcgacggcctagggccc 3696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 4627 - 4661
Alignment:
Q  247 ggcataggccgcgagtgcgacggcctagggccctt 281  Q
    |||||||||||||||||||| ||||||||||||||    
T  4627 ggcataggccgcgagtgcgatggcctagggccctt 4661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 65985 - 66048
Alignment:
Q  235 ggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaa 299  Q
    ||||||||||||| ||||||||| | ||||||||||||||||| | || |  |||||||||||||    
T  65985 ggccggccctagg-cataggccgggggtgcgacggcctagggcgcatgcccgtagggggccaaaa 66048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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