View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0589_high_19 (Length: 366)
Name: NF0589_high_19
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 34275026 - 34275375
Alignment:
| Q |
1 |
tgcccccaggatccatttggtcctgacgtcccaacaaggtgattt----tactcaaaatcagttaattttgtatcatcttgctaatgaaaatgttgagta |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34275026 |
tgcccccaggatccatttggtcctgacgtcccaacaaggtgatttaatttactcaaaatcagttaattttgtatcatcttgctaatgaaaatgttgagta |
34275125 |
T |
|
| Q |
97 |
agaaaggaggttatgtctttgcaagtccttagatactgcatgcttcattttatgttattaaactaggaaactgttcatcacccatagtttcct---atca |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34275126 |
agaaaggaggttatgtctttgcaagtccttagatactgcatgcttcattttatgttattaaactaggaaactgttcatcacccatagtttcctatcatca |
34275225 |
T |
|
| Q |
194 |
tcactctttgtgtggtctttcattattaattagagtcctttttagagtcaattaatttgagtttccttatgctaatcgtcaattgatggtggtataccac |
293 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34275226 |
tcactctttgtgtggtctttcattattaa------------ttagagtcaattaatttgagtttccttatgctaatcgtcaattgatggtggtataccac |
34275313 |
T |
|
| Q |
294 |
tatatctagttagattgtgaagctaaattcttgatgtcttatttgagttatttattgatatt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34275314 |
tatatctagttagattgtgaagctaaattcttgatgtcttatttgagttatttattgatatt |
34275375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 192 - 308
Target Start/End: Original strand, 34282390 - 34282502
Alignment:
| Q |
192 |
catcactctttgtgtggtctttcattattaattagagtcctttttagagtcaattaatttgagtttccttatgctaatcgtcaattgatggtggtatacc |
291 |
Q |
| |
|
|||||||||||||||| || ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34282390 |
catcactctttgtgtgttcattcattatttgt----gtcctttttagagtcaattaatttgagtttccttgtgctaatcgtcaattgatggtggtatacc |
34282485 |
T |
|
| Q |
292 |
actatatctagttagat |
308 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34282486 |
actatatctagttagat |
34282502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 331 times since January 2019
Visitors: 3833