View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_high_21 (Length: 345)
Name: NF0589_high_21
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_high_21 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: scaffold0176 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 48 - 258
Target Start/End: Original strand, 29085 - 29295
Alignment:
| Q |
48 |
atctccaatcctggattttggggcatggtgagtattaatattctaacattttgttttgtatatgacnnnnnnnttaatgtcatttataactaatgtttct |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29085 |
atctccaatcctggattttggggcatggtgagtattaatattctaacattttgttttgtatatgacaaaaaaattaatgtcatttataactaatgtttct |
29184 |
T |
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| Q |
148 |
aatatttttacaaacagaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcatttatcgg |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29185 |
aatatttttacaaacagaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcatttatcgg |
29284 |
T |
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| Q |
248 |
atctgatgatg |
258 |
Q |
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||||||||||| |
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| T |
29285 |
atctgatgatg |
29295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 48 - 258
Target Start/End: Original strand, 34168763 - 34168973
Alignment:
| Q |
48 |
atctccaatcctggattttggggcatggtgagtattaatattctaacattttgttttgtatatgacnnnnnnnttaatgtcatttataactaatgtttct |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34168763 |
atctccaatcctggattttggggcatggtgagtattaatattctaacattttgttttgtatatgacaaaaaaattaatgtcatttataactaatgtttct |
34168862 |
T |
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| Q |
148 |
aatatttttacaaacagaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcatttatcgg |
247 |
Q |
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| T |
34168863 |
aatatttttacaaacagaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcatttatcgg |
34168962 |
T |
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| Q |
248 |
atctgatgatg |
258 |
Q |
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| T |
34168963 |
atctgatgatg |
34168973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 48 - 258
Target Start/End: Original strand, 34208973 - 34209183
Alignment:
| Q |
48 |
atctccaatcctggattttggggcatggtgagtattaatattctaacattttgttttgtatatgacnnnnnnnttaatgtcatttataactaatgtttct |
147 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34208973 |
atctccaatcctgaattttggggcatggtgagtattaatattctaacattttgttttgtatatgacaaaaaaattaatgtcatttataactaatgtttct |
34209072 |
T |
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| Q |
148 |
aatatttttacaaacagaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcatttatcgg |
247 |
Q |
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| T |
34209073 |
aatatttttacaaacagaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcatttatcgg |
34209172 |
T |
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| Q |
248 |
atctgatgatg |
258 |
Q |
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||||||||||| |
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| T |
34209173 |
atctgatgatg |
34209183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 69 - 258
Target Start/End: Complemental strand, 34153783 - 34153594
Alignment:
| Q |
69 |
ggcatggtgagtattaatattctaacattttgttttgtatatgacnnnnnnnttaatgtcatttataactaatgtttctaatatttttacaaacagaaca |
168 |
Q |
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| T |
34153783 |
ggcatggtgagtattaatattctaacattttgttttgtatatgacaaaaaaattaatgtcatttataactaatgtttctaatatttttacaaacagaaca |
34153684 |
T |
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| Q |
169 |
ttgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcatttatcggatctgatgatg |
258 |
Q |
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| T |
34153683 |
ttgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcatttatcggatctgatgatg |
34153594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 38726433 - 38726355
Alignment:
| Q |
164 |
gaacattgagcaagggaaaaagtataaagtggtgttctatgttagatcacttggtcctattaatttacaagtttcattt |
242 |
Q |
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||||||||| ||||| |||| |||||| || ||||| |||||| |||||||||||| ||| ||||| ||||||||||| |
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| T |
38726433 |
gaacattgaacaaggtaaaatgtataaggtcgtgttgcatgttaaatcacttggtccaattgatttaaaagtttcattt |
38726355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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