View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0589_high_25 (Length: 328)

Name: NF0589_high_25
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0589_high_25
NF0589_high_25
[»] chr2 (2 HSPs)
chr2 (20-299)||(33860033-33860312)
chr2 (124-232)||(16231484-16231592)
[»] chr1 (9 HSPs)
chr1 (123-288)||(43067524-43067689)
chr1 (105-288)||(43044284-43044467)
chr1 (123-288)||(43083146-43083311)
chr1 (123-295)||(38138666-38138838)
chr1 (123-288)||(45984506-45984671)
chr1 (123-282)||(50911743-50911902)
chr1 (105-284)||(3300018-3300197)
chr1 (123-277)||(7891776-7891930)
chr1 (111-262)||(43077427-43077578)
[»] chr4 (2 HSPs)
chr4 (124-294)||(19965332-19965504)
chr4 (130-288)||(4230774-4230932)
[»] chr8 (3 HSPs)
chr8 (124-288)||(4618992-4619156)
chr8 (161-288)||(4788273-4788400)
chr8 (161-234)||(4296780-4296853)
[»] chr6 (2 HSPs)
chr6 (105-288)||(7530072-7530255)
chr6 (105-288)||(7520535-7520718)
[»] chr5 (1 HSPs)
chr5 (130-300)||(16348456-16348626)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 33860033 - 33860312
Alignment:
Q  20 tcttcctcttctgatattgtttttccacaaatacatccatatcatcatcctgcacgattcaattcatcaatgctgactcagtgatcttcctctccacaga 119  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33860033 tcttcctcttctgatgttgtttttccacaaatacatccatatcatcatcctgcacgattccattcatcaatgctgactcagtgatcttcctctccacaga 33860132  T
Q  120 cgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtg 219  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33860133 cgcgatgacgccaaaagccacagtttgacgcctgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtg 33860232  T
Q  220 ggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttaccataaaaccagtc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33860233 ggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttaccataaaaccagtc 33860312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 16231484 - 16231592
Alignment:
Q  124 atgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaa 223  Q
    ||||| |||| |||||||||||||||| |||||||  || ||||||| || || | |||||| | |  || | |||| ||||||||||||||  | ||||    
T  16231484 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 16231583  T
Q  224 tcatcttaa 232  Q
    |||||||||    
T  16231584 tcatcttaa 16231592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 123 - 288
Target Start/End: Complemental strand, 43067689 - 43067524
Alignment:
Q  123 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 222  Q
    ||||||||||| |||||||||||||||| |||||||  || |||||||||||||||||||||| | || ||||  ||| |||||||| ||||||||||||    
T  43067689 gatgacgccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtggga 43067590  T
Q  223 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 288  Q
    ||||||||||||  | ||||||| ||| ||||||||||||  |||||||||||||| |||||||||    
T  43067589 atcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttacca 43067524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 105 - 288
Target Start/End: Original strand, 43044284 - 43044467
Alignment:
Q  105 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 204  Q
    |||| ||||||||| |  |||||| |||| |||||||||||||||| |||||||  || |||||||||||||||||||||| | || ||||  ||| |||    
T  43044284 cttcttctccacagccttgatgaccccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaacc 43044383  T
Q  205 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 288  Q
    ||||| ||||||||||||||||||||||||  | ||||||| ||| ||||||||||||  |||||||||||||| |||||||||    
T  43044384 accatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttacca 43044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 123 - 288
Target Start/End: Original strand, 43083146 - 43083311
Alignment:
Q  123 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 222  Q
    ||||||||||| |||||||||||||||| |||||||  || ||||||| |||||||||||||| | || ||||  ||| |||||||| ||||||||||||    
T  43083146 gatgacgccaacagccacagtttgacgcatgtctctaacagcaaaacgaccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtggga 43083245  T
Q  223 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 288  Q
    ||||||||||||  | ||||||| ||| ||||||||||||  |||||||||||||| |||||||||    
T  43083246 atcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttacca 43083311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 123 - 295
Target Start/End: Complemental strand, 38138838 - 38138666
Alignment:
Q  123 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 222  Q
    |||||| |||| |||||||||||||||| |||||||  || |||||||||| ||||||||||||  ||  ||||||||||||||||| | ||||||||||    
T  38138838 gatgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagtggaggataagtagaaaaatcctctaccaccatggacttggtggga 38138739  T
Q  223 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttaccataaaacc 295  Q
    |||||||||| | || ||||||||||| ||||||||||||  ||||||||||| ||||||  |||| ||||||    
T  38138738 atcatcttaacaacaccagcatcaccattcttcaagaatttgggctccttctcgatttccaaaccagaaaacc 38138666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 123 - 288
Target Start/End: Complemental strand, 45984671 - 45984506
Alignment:
Q  123 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 222  Q
    |||||| |||| ||||||||||||| ||  ||||||  |||||||||||||||||||||||||   || ||||  |||||||||||||||||||||||||    
T  45984671 gatgactccaacagccacagtttgatgccagtctctgacaacaaaacggccgagtggaggatatagagagaaaggctctaccaccataggcttggtggga 45984572  T
Q  223 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 288  Q
    ||||||||||||  | ||| |||||||||| |||| ||||  |||||| |||||||||||| ||||    
T  45984571 atcatcttaataataccagtatcaccactcatcaaaaatttgggctccctctcaatttcctcacca 45984506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 123 - 282
Target Start/End: Original strand, 50911743 - 50911902
Alignment:
Q  123 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 222  Q
    |||||| |||| |||||||||||||||| |||||||  || ||||||||||||||| |||| | |  |  |||  |||||||| ||| ||||||||||||    
T  50911743 gatgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccgagtgaaggaaatttggaaaaagtctctaccaacatgggcttggtggga 50911842  T
Q  223 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttcc 282  Q
    ||||||| |||| || |||| |||||| ||||||||||||  ||||||||||||||||||    
T  50911843 atcatctcaataacaccagcgtcaccattcttcaagaatttgggctccttctcaatttcc 50911902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 284
Target Start/End: Original strand, 3300018 - 3300197
Alignment:
Q  105 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 204  Q
    |||| ||||||||| |  |||||| |||| ||||||||| |||||| | || ||  || | |||||||| ||||||||||| | || ||||  ||| |||    
T  3300018 cttcttctccacagccttgatgacaccaacagccacagtctgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaacc 3300117  T
Q  205 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttcctt 284  Q
    ||||| ||||||||||||||||||||||||  | ||||||||||  ||||||||||||  |||||||||||||| |||||    
T  3300118 accatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctt 3300197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 123 - 277
Target Start/End: Complemental strand, 7891930 - 7891776
Alignment:
Q  123 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 222  Q
    |||||| |||| |||||||||||||||| |||||||  || ||||||| || |||| ||||||   ||  |||  |||||||||||| ||||||||||||    
T  7891930 gatgactccaatagccacagtttgacgcatgtctctgacagcaaaacgaccaagtgaaggatatgcagtaaaagtctctaccaccatgggcttggtggga 7891831  T
Q  223 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaa 277  Q
    ||||||||||||  | ||||||| ||| ||||||||||||  |||||||||||||    
T  7891830 atcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaa 7891776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 262
Target Start/End: Complemental strand, 43077578 - 43077427
Alignment:
Q  111 ctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccata 210  Q
    |||||||| || |||||| |||| ||||||||||||||||||||| ||   |  ||||||||| ||||||||||| | || ||||  ||| ||||||||     
T  43077578 ctccacagccgtgatgacaccaacagccacagtttgacgcttgtccctgatagtaaaacggccaagtggaggatattcagagaaagtctcaaccaccatg 43077479  T
Q  211 ggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaatt 262  Q
    ||||||||||||||||||||||||  | ||||||||||| || ||| |||||    
T  43077478 ggcttggtgggaatcatcttaataataccagcatcaccattcatcaggaatt 43077427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 124 - 294
Target Start/End: Complemental strand, 19965504 - 19965332
Alignment:
Q  124 atgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaa 223  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| | || |||| ||||||||||||||||||||| |||||    
T  19965504 atgactccaaaagccacagtttgacgcatgtctctagcaacaaaacagccgagtggaggatattgagagaaagcctctaccaccataggcttggcgggaa 19965405  T
Q  224 tcatcttaatagcagcagcat--caccactcttcaagaattcaggctccttctcaatttccttaccataaaac 294  Q
    ||||||||| | |||||||||  ||||| || |||||||| | |||  |||  |||||||||||||| |||||    
T  19965404 tcatcttaacaacagcagcatcacaccattcatcaagaatccgggcatctttgcaatttccttaccagaaaac 19965332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 288
Target Start/End: Original strand, 4230774 - 4230932
Alignment:
Q  130 ccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatct 229  Q
    |||| |||||||||||| ||| | |||||  || |||||||||| ||||||||||| | || ||||  ||| |||||||| |||||||||||||||||||    
T  4230774 ccaacagccacagtttgccgcatatctctgacagcaaaacggccaagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatct 4230873  T
Q  230 taatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 288  Q
    |||||  | ||||||| ||| |||||| ||||| |||||||||||| || |||||||||    
T  4230874 taataataccagcatctccattcttcaggaatttaggctccttctcgatctccttacca 4230932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 124 - 288
Target Start/End: Original strand, 4618992 - 4619156
Alignment:
Q  124 atgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaa 223  Q
    ||||| |||| |||||| ||| ||||  |||||||  || ||||||||||||||| |||||||| ||  |||  |||||||||||| |||||||||||||    
T  4618992 atgactccaacagccactgttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaa 4619091  T
Q  224 tcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 288  Q
    |||||||||||    ||||||||||| |||||| |||||  ||||| ||||||||| ||||||||    
T  4619092 tcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttacca 4619156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 288
Target Start/End: Complemental strand, 4788400 - 4788273
Alignment:
Q  161 caacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaa 260  Q
    |||||||| |||| |||||||||||   |  ||||  |||||||||||||||||||||||||| ||||| ||||  | || |||||||| ||||||||||    
T  4788400 caacaaaatggccaagtggaggatatagatagaaaggctctaccaccataggcttggtgggaaccatctcaataagaccatcatcaccattcttcaagaa 4788301  T
Q  261 ttcaggctccttctcaatttccttacca 288  Q
    | |||||  || ||||||| ||| ||||    
T  4788300 tgcaggcctctcctcaattacctaacca 4788273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 4296780 - 4296853
Alignment:
Q  161 caacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatcttaata 234  Q
    |||||||||||| |||||||||| |   || ||||  |||||||||||||| || |||||||||||||||||||    
T  4296780 caacaaaacggctgagtggaggagatagagagaaaggctctaccaccatagactcggtgggaatcatcttaata 4296853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 105 - 288
Target Start/End: Complemental strand, 7530255 - 7530072
Alignment:
Q  105 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 204  Q
    |||| ||||||||| |  |||||| |||| ||| |||||||||||| |||| ||  || ||||||| || || |||||||| | ||| ||   ||| |||    
T  7530255 cttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacagcaaaacgtccaagaggaggatattcagcaaaggtctcaacc 7530156  T
Q  205 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 288  Q
    ||||| ||||||||||||| |||||||||   | ||||||||||| |||||||||| |  |||||||||||||| |||||||||    
T  7530155 accatgggcttggtgggaaccatcttaatgataccagcatcaccattcttcaagaacttgggctccttctcaatctccttacca 7530072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 288
Target Start/End: Complemental strand, 7520718 - 7520535
Alignment:
Q  105 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 204  Q
    |||| ||||||||| |  |||||| |||| ||| |||||||||||| |||| ||  |  ||||||| || || |||||||| | ||||||   ||| |||    
T  7520718 cttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacggcaaaacgtccaagaggaggatattcagcgaaggtctcaacc 7520619  T
Q  205 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 288  Q
    ||||| ||||||||||||| |||||||||   | ||||||||||  |||||||||| |  |||||||||||||| |||||||||    
T  7520618 accatgggcttggtgggaaccatcttaatgataccagcatcaccgttcttcaagaacttgggctccttctcaatctccttacca 7520535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 300
Target Start/End: Original strand, 16348456 - 16348626
Alignment:
Q  130 ccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatct 229  Q
    |||| ||||||||||||| || | |||||  ||| |||||||||||||| |||||| | ||  |||  |||||||||||| |||||||||||||||||||    
T  16348456 ccaatagccacagtttgatgcgtatctctgacaataaaacggccgagtgaaggatattcagaaaaagtctctaccaccatgggcttggtgggaatcatct 16348555  T
Q  230 taatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttaccataaaaccagtct 300  Q
     ||||    || |||||||  ||||||||||||  ||||||||| |||||  ||| ||| |||||| ||||    
T  16348556 gaataatgccaccatcacctttcttcaagaatttgggctccttcacaattatcttgccagaaaacctgtct 16348626  T

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