View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_high_28 (Length: 323)
Name: NF0589_high_28
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_high_28 |
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| [»] scaffold0413 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 93 - 309
Target Start/End: Complemental strand, 11968437 - 11968221
Alignment:
| Q |
93 |
caatccctatgctatcatcttgtcaaataattttcgtgtaagtccttttcatttatgttcttctaatttatctcttgtctcacttcatgaaattctaatt |
192 |
Q |
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| T |
11968437 |
caatccctatgctatcatcttgtcaa-taattttcgtgcaagtccttttcatatatgttcttctaatttatcccttgtctcacttcatcaaattctaatt |
11968339 |
T |
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| Q |
193 |
taagccatttc-gtgttctttaaacctgtcatcatagaattgcgactacggcttcgttcactgtcagattgagctaatttttggtcaacgtgtttccaac |
291 |
Q |
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| T |
11968338 |
taagtcatttttgttttcttcaaacctgtcatcgtagaattgcgactacggcttcgttcactgtctgattgagctaattattggacagcgtgttcccaac |
11968239 |
T |
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| Q |
292 |
atgtaaatcttcttttca |
309 |
Q |
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| T |
11968238 |
atgtaaatcctcttttca |
11968221 |
T |
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Target: scaffold0413 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0413
Description:
Target: scaffold0413; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 8570 - 8680
Alignment:
| Q |
93 |
caatccctatgctatcatcttgtcaaataattttcgtgtaagtcctttt-catttatgttcttctaatttatctcttgtctcacttcatgaaattctaat |
191 |
Q |
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| T |
8570 |
caatctctatgctatcatcttgtcaaataattttcgtgtaagtccttttgcatatatgttcttccattttatttcttgtctcact--atgaaattctaat |
8667 |
T |
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| Q |
192 |
t-taagccatttc |
203 |
Q |
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| T |
8668 |
tctaagccatttc |
8680 |
T |
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Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 93 - 251
Target Start/End: Complemental strand, 10751938 - 10751779
Alignment:
| Q |
93 |
caatccctatgctatcatcttgtcaaataattttcgtgtaagtcctttt-catttatgttcttctaatttatctcttgtctcacttcatgaaattctaat |
191 |
Q |
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| T |
10751938 |
caatctctatgctatcatcttgttaaataatttttgtgcaagtccttttgcatatatgttcttccattttatttcttgtctcact--atgaaattctaat |
10751841 |
T |
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| Q |
192 |
t-taagccattt-cgtgttctttaaacctgtcatcatagaattgcgactacggcttcgttca |
251 |
Q |
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| T |
10751840 |
tctaagccatttccgttttcactaaacctgtccttggagaactgcgactacgccttcgttca |
10751779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 49170741 - 49170647
Alignment:
| Q |
200 |
tttcgtgttctttaaacctgtcatcatagaattgcgactacggcttcgttcactgtcagattgagctaatttttggtcaacgtgtttccaacatg |
294 |
Q |
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| T |
49170741 |
tttcgttttcctcaaacatgtcatcgtagaattgcgactacggcttcgttcaccgtccgattgagctaatttttggaaagcgtgttcccaacatg |
49170647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 12197026 - 12196951
Alignment:
| Q |
200 |
tttcgtgttctttaaacctgtcatcatagaattgcgactacggcttcgttcactgtcagattgagctaatttttgg |
275 |
Q |
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| T |
12197026 |
tttcgttttcctaaaacctgtcatcgtagaattgcaactacgccttcgttcacggtccgatggagctaatatttgg |
12196951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 323
Target Start/End: Original strand, 22403437 - 22403656
Alignment:
| Q |
107 |
tcatcttgtcaaataattttcgtgtaagtcctttt-catttatgttcttctaatttatctcttgtctcacttcatgaaattctaat-ttaagcca-tttc |
203 |
Q |
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| T |
22403437 |
tcatcttgtcaaataattttcgtgtaagtccttttgtatatatgttcttccattttatttcttatctcgct--atgaaattctaatcttaaaccattttc |
22403534 |
T |
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| Q |
204 |
gtgttctttaaacctgtcatc--atagaattgcgactacggcttcgttcactgtcagattgagctaatttttggtcaacgtgtttccaacatgtaaatct |
301 |
Q |
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| T |
22403535 |
gttttcactaaacctgtc-tcgtagagaattgtgtctacgccttcgttcaccgttcaattgagctaatttttgggcagcatgtttgcaacatgcagttct |
22403633 |
T |
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| Q |
302 |
tc-ttttcaacggtctgaacgtc |
323 |
Q |
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| T |
22403634 |
tcattttcaacggcctgatcgtc |
22403656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 41341098 - 41341000
Alignment:
| Q |
153 |
ttctaatttatctcttgtctcacttcatg-aaattctaatttaagcca-tttcgtgttctttaaacctgtcatcatagaattgcgactacggcttcgtt |
249 |
Q |
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| T |
41341098 |
ttctaatttatctcttgtttcacttcatgaaaattctgatttaagtcattttcgttttcctcaaaccagtcagcgtagaactgcgactacgccttcgtt |
41341000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 8421359 - 8421453
Alignment:
| Q |
200 |
tttcgtgttctttaaacctgtcatcatagaattgcgactacggcttcgttcactgtcagattgagctaatttttggtcaacgtgtttccaacatg |
294 |
Q |
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|||||| ||| | |||| ||||||| ||||||||||| |||| |||||||||| ||| ||||||||| |||||||| || |||||| |||||||| |
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| T |
8421359 |
tttcgttttcctcaaacatgtcatcgtagaattgcgattacgccttcgttcaccgtccgattgagctcatttttggacagcgtgttcccaacatg |
8421453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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