View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0589_high_37 (Length: 254)

Name: NF0589_high_37
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0589_high_37
NF0589_high_37
[»] chr6 (12 HSPs)
chr6 (16-226)||(14820396-14820606)
chr6 (16-147)||(14818118-14818249)
chr6 (50-176)||(6394601-6394727)
chr6 (35-131)||(6426254-6426350)
chr6 (80-210)||(6589525-6589655)
chr6 (106-211)||(6423010-6423115)
chr6 (20-116)||(7442620-7442716)
chr6 (100-173)||(7118989-7119062)
chr6 (100-173)||(7131467-7131540)
chr6 (181-226)||(14818251-14818296)
chr6 (152-213)||(6426350-6426411)
chr6 (98-210)||(19632224-19632336)
[»] chr7 (4 HSPs)
chr7 (16-197)||(15092366-15092547)
chr7 (46-130)||(10170307-10170391)
chr7 (46-130)||(10177832-10177916)
chr7 (16-100)||(15106764-15106848)
[»] chr1 (2 HSPs)
chr1 (16-109)||(49219026-49219118)
chr1 (63-118)||(33160478-33160533)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 14820396 - 14820606
Alignment:
Q  16 atgttacactattacttagggaattataacgcacatttgtaagctgtcattttaaaaaggcaaattctcagagaagtaaatcttaaaataaaaacaactt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  14820396 atgttacactattacttagggaattataacgcacatttgtaatatgtcattttaaaaaggcaaattctcagagatgtaaatcttaaaacaaaaacaactt 14820495  T
Q  116 acagtgttcaaacttcagcatagcaatctcatagcactagcaaagatgacatccacgacgcgatatgagtttcctaattttgcgacttaaatgaaacccc 215  Q
    ||||||||||||||||||||  ||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14820496 acagtgttcaaacttcagcaacgcaatttcataatactagcaaagatgacatccacgacgcgatatgagtttcctaattttgagacttaaatgaaacccc 14820595  T
Q  216 gccaaattaat 226  Q
    |||||||||||    
T  14820596 gccaaattaat 14820606  T

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Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 14818118 - 14818249
Alignment:
Q  16 atgttacactattacttagggaattataacgcacatttgtaagctgtcattttaaaaaggcaaattctcagagaagtaaatcttaaaataaaaacaactt 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  14818118 atgttacactattacttagggaattataacggacatttgtaagatgtcattttaaaaaggcaaattctcaaagatgtaaatcttaaaacaaaaacaactt 14818217  T
Q  116 acagtgttcaaacttcagcatagcaatctcat 147  Q
    |||||||||||||||||||| |||||| ||||    
T  14818218 acagtgttcaaacttcagcaaagcaatttcat 14818249  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 6394601 - 6394727
Alignment:
Q  50 atttgtaagctgtcattttaaaaaggcaaattctcagagaagtaaatcttaaaataaaaacaacttacagtgttcaaacttcagcatagcaatctcatag 149  Q
    ||||||||| || ||||||||||||| || ||||||||||||||||| || ||| ||||| |||||||||||||||||||||||||||||||| ||| |     
T  6394601 atttgtaagatgacattttaaaaaggaaatttctcagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaa 6394700  T
Q  150 cactagcaaagatgacatccacgacgc 176  Q
     ||||||||| | | ||||||||||||    
T  6394701 tactagcaaatacggcatccacgacgc 6394727  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 6426254 - 6426350
Alignment:
Q  35 ggaattataacgcacatttgtaagctgtcattttaaaaaggcaaattctcagagaagtaaatcttaaaataaaaacaacttacagtgttcaaacttc 131  Q
    |||||||| ||||||||||||||  || |||||||||||||| | |||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  6426254 ggaattattacgcacatttgtaatatgacattttaaaaaggctatttctcagagaagtaaatcataaaacaaaaacaacttacaatgttcaaacttc 6426350  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 6589655 - 6589525
Alignment:
Q  80 ttctcagagaagtaaatcttaaaataaaaacaacttacagtgttcaaacttcagcatagcaatctcatagcactagcaaagatgacatccacgacgcgat 179  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||||| |||| |||| |||||| ||| |  ||||| ||||||| |||||| || | ||     
T  6589655 ttctcagagaagtgaatattaaaacaaaaacaacttacagtgttcatactttagcacagcaatttcagaatactagtaaagatggcatccatgatgggag 6589556  T
Q  180 atgagtttcctaattttgcgacttaaatgaa 210  Q
    | || || |||| |||||  |||||||||||    
T  6589555 aagatttccctagttttgtcacttaaatgaa 6589525  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 6423010 - 6423115
Alignment:
Q  106 aaaacaacttacagtgttcaaacttcagcatagcaatctcatagcactagcaaagatgacatccacgacgcgatatgagtttcctaattttgcgacttaa 205  Q
    ||||||||||||||||||||||||| ||||||| ||| ||| |  ||||||||||| | |||||||||  | | ||||||||| || |||||  |||||     
T  6423010 aaaacaacttacagtgttcaaactttagcatagaaatttcagaatactagcaaagaaggcatccacgatccaagatgagtttcttatttttgtcacttac 6423109  T
Q  206 atgaaa 211  Q
    ||||||    
T  6423110 atgaaa 6423115  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 7442716 - 7442620
Alignment:
Q  20 tacactattacttagggaattataacgcacatttgtaagctgtcattttaaaaaggcaaattctcagagaagtaaatcttaaaataaaaacaactta 116  Q
    |||||||||||||||| |||||| | |||| ||| |||| || ||||| |||||   || |||||| |||| |||||||||||| ||||||||||||    
T  7442716 tacactattacttaggaaattatcatgcacgtttataagttgacatttaaaaaaactaatttctcaaagaaataaatcttaaaacaaaaacaactta 7442620  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 7118989 - 7119062
Alignment:
Q  100 aaaataaaaacaacttacagtgttcaaacttcagcatagcaatctcatagcactagcaaagatgacatccacga 173  Q
    |||| ||||||| ||||||||||| |||||||| |||||||||   |||  ||||||||||| |||||||||||    
T  7118989 aaaaaaaaaacagcttacagtgtttaaacttcaacatagcaattaaataatactagcaaagaagacatccacga 7119062  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 7131467 - 7131540
Alignment:
Q  100 aaaataaaaacaacttacagtgttcaaacttcagcatagcaatctcatagcactagcaaagatgacatccacga 173  Q
    |||| ||||||| ||||||||||| |||||||| |||||||||   |||  ||||||||||| |||||||||||    
T  7131467 aaaaaaaaaacagcttacagtgtttaaacttcaacatagcaattaaataatactagcaaagaagacatccacga 7131540  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 14818251 - 14818296
Alignment:
Q  181 tgagtttcctaattttgcgacttaaatgaaaccccgccaaattaat 226  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||    
T  14818251 tgagtttcctaattttgtcacttgaatgaaaccccgccaaattaat 14818296  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 6426350 - 6426411
Alignment:
Q  152 ctagcaaagatgacatccacgacgcgatatgagtttcctaattttgcgacttaaatgaaacc 213  Q
    ||||||||||| ||||||| ||||||||| |||||||||| ||| |  ||||||| ||||||    
T  6426350 ctagcaaagataacatccatgacgcgataagagtttcctattttcgtcacttaaacgaaacc 6426411  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 19632224 - 19632336
Alignment:
Q  98 ttaaaataaaaacaacttacagtgttcaaacttcagcatagcaatctcatagcactagcaaagatgacatccacgacgcgatatgagtttcctaattttg 197  Q
    |||||| ||||||||||||||| ||||||||||||  |||||| | ||  |  ||||||||||| | |||||| ||||| |   |||||||||| |||||    
T  19632224 ttaaaacaaaaacaacttacagggttcaaacttcataatagcattttcggaatactagcaaagaaggcatccatgacgcaagcagagtttcctagttttg 19632323  T
Q  198 cgacttaaatgaa 210  Q
      |||| ||||||    
T  19632324 tcacttgaatgaa 19632336  T

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Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 15092547 - 15092366
Alignment:
Q  16 atgttacactattacttagggaattataacgcacatttgtaagctgtcattttaaaaaggcaaattctcagagaagtaaatcttaaaataaaaacaactt 115  Q
    ||||||||| || ||||||| ||||||||  || ||||| ||| || ||||||||||||| || |||||||||||||||||||| ||| ||||| |||||    
T  15092547 atgttacacaataacttaggcaattataattcaaatttgaaagatgacattttaaaaaggaaatttctcagagaagtaaatcttgaaacaaaaagaactt 15092448  T
Q  116 acagtgttcaaacttcagcatagcaatctcatagcactagcaaagatgacatccacgacgcgatatgagtttcctaattttg 197  Q
    ||||||||||||||||||||||||||| ||| |  ||||||||| ||| |||||||||||||| |  ||||||||| |||||    
T  15092447 acagtgttcaaacttcagcatagcaatttcagaatactagcaaatatggcatccacgacgcgagaatagtttcctagttttg 15092366  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 10170391 - 10170307
Alignment:
Q  46 gcacatttgtaagctgtcattttaaaaaggcaaattctcagagaagtaaatcttaaaataaaaacaacttacagtgttcaaactt 130  Q
    ||||||| ||||| || ||||||||||    || |||||| |||| |||||||||||| |||||| |||||||| ||||||||||    
T  10170391 gcacattcgtaagttgacattttaaaatattaatttctcaaagaactaaatcttaaaacaaaaaccacttacagagttcaaactt 10170307  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 10177916 - 10177832
Alignment:
Q  46 gcacatttgtaagctgtcattttaaaaaggcaaattctcagagaagtaaatcttaaaataaaaacaacttacagtgttcaaactt 130  Q
    ||||||| ||||| || ||||||||||    || |||||| |||| |||||||||||| |||||| |||||||| ||||||||||    
T  10177916 gcacattcgtaagttgacattttaaaatattaatttctcaaagaactaaatcttaaaacaaaaaccacttacagagttcaaactt 10177832  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 15106848 - 15106764
Alignment:
Q  16 atgttacactattacttagggaattataacgcacatttgtaagctgtcattttaaaaaggcaaattctcagagaagtaaatctta 100  Q
    |||||||||||||| |  ||||  ||||| ||||||||||||| ||  |||||| ||||| || |||||||||||||||| ||||    
T  15106848 atgttacactattagtaggggacatataatgcacatttgtaagatgaaattttataaaggaaatttctcagagaagtaaaactta 15106764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 49219026 - 49219118
Alignment:
Q  16 atgttacactattacttagggaattataacgcacatttgtaagctgtcattttaaaaaggcaaattctcagagaagtaaatcttaaaataaaaa 109  Q
    ||||||||||| |||||||| ||||||||  || ||||| ||| || ||||||||||||| || |||| ||||||||||||||| ||| |||||    
T  49219026 atgttacactaatacttaggcaattataattcaaatttgcaagatg-cattttaaaaaggaaatttcttagagaagtaaatcttgaaacaaaaa 49219118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 33160478 - 33160533
Alignment:
Q  63 cattttaaaaaggcaaattctcagagaagtaaatcttaaaataaaaacaacttaca 118  Q
    ||||||||||| | || |||||||||||||||||||||||  ||||||||||||||    
T  33160478 cattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttaca 33160533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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