View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0589_low_10 (Length: 471)

Name: NF0589_low_10
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0589_low_10
NF0589_low_10
[»] chr2 (2 HSPs)
chr2 (11-442)||(33859884-33860312)
chr2 (267-375)||(16231484-16231592)
[»] chr1 (9 HSPs)
chr1 (266-431)||(43067524-43067689)
chr1 (248-431)||(43044284-43044467)
chr1 (266-431)||(43083146-43083311)
chr1 (266-438)||(38138666-38138838)
chr1 (266-431)||(45984506-45984671)
chr1 (266-425)||(50911743-50911902)
chr1 (248-427)||(3300018-3300197)
chr1 (266-420)||(7891776-7891930)
chr1 (254-405)||(43077427-43077578)
[»] chr4 (2 HSPs)
chr4 (267-437)||(19965332-19965504)
chr4 (273-431)||(4230774-4230932)
[»] chr8 (3 HSPs)
chr8 (267-431)||(4618992-4619156)
chr8 (304-431)||(4788273-4788400)
chr8 (304-377)||(4296780-4296853)
[»] chr6 (2 HSPs)
chr6 (248-431)||(7530072-7530255)
chr6 (248-431)||(7520535-7520718)
[»] chr5 (1 HSPs)
chr5 (273-443)||(16348456-16348626)
[»] chr3 (2 HSPs)
chr3 (62-121)||(32867597-32867656)
chr3 (148-206)||(32867697-32867753)


Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 442
Target Start/End: Original strand, 33859884 - 33860312
Alignment:
Q  11 cacagaacacctagagagaaattcaaaggtcttcctaacaattaatcctacttaataggtaaaatctgttcctagcaatactgaaattcaaatttaaaat 110  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33859884 cacagaactcctagagagaaattcaaaggtcttcccaacaattaatcctacttaataggtaaaatctgttcctagcaatactgaaattcaaatttaaaaa 33859983  T
Q  111 ttctgttatactaatcagcataactaatactaaacagcagaatcataggtcttcttcctcttctgatattgtttttccacaaatacatccatatcatcat 210  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| |||||||   ||||||||||| ||||||||||||||||||||||||||||||||    
T  33859984 ttctattatactaatcagcataactaatcctaaacagcagaatcaaaggtctt---cctcttctgatgttgtttttccacaaatacatccatatcatcat 33860080  T
Q  211 cctgcacgattcaattcatcaatgctgactcagtgatcttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaa 310  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33860081 cctgcacgattccattcatcaatgctgactcagtgatcttcctctccacagacgcgatgacgccaaaagccacagtttgacgcctgtctctcgcaacaaa 33860180  T
Q  311 acggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33860181 acggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggc 33860280  T
Q  411 tccttctcaatttccttaccataaaaccagtc 442  Q
    ||||||||||||||||||||||||||||||||    
T  33860281 tccttctcaatttccttaccataaaaccagtc 33860312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 375
Target Start/End: Original strand, 16231484 - 16231592
Alignment:
Q  267 atgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaa 366  Q
    ||||| |||| |||||||||||||||| |||||||  || ||||||| || || | |||||| | |  || | |||| ||||||||||||||  | ||||    
T  16231484 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 16231583  T
Q  367 tcatcttaa 375  Q
    |||||||||    
T  16231584 tcatcttaa 16231592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 266 - 431
Target Start/End: Complemental strand, 43067689 - 43067524
Alignment:
Q  266 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 365  Q
    ||||||||||| |||||||||||||||| |||||||  || |||||||||||||||||||||| | || ||||  ||| |||||||| ||||||||||||    
T  43067689 gatgacgccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtggga 43067590  T
Q  366 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 431  Q
    ||||||||||||  | ||||||| ||| ||||||||||||  |||||||||||||| |||||||||    
T  43067589 atcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttacca 43067524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 248 - 431
Target Start/End: Original strand, 43044284 - 43044467
Alignment:
Q  248 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 347  Q
    |||| ||||||||| |  |||||| |||| |||||||||||||||| |||||||  || |||||||||||||||||||||| | || ||||  ||| |||    
T  43044284 cttcttctccacagccttgatgaccccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaacc 43044383  T
Q  348 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 431  Q
    ||||| ||||||||||||||||||||||||  | ||||||| ||| ||||||||||||  |||||||||||||| |||||||||    
T  43044384 accatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttacca 43044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 266 - 431
Target Start/End: Original strand, 43083146 - 43083311
Alignment:
Q  266 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 365  Q
    ||||||||||| |||||||||||||||| |||||||  || ||||||| |||||||||||||| | || ||||  ||| |||||||| ||||||||||||    
T  43083146 gatgacgccaacagccacagtttgacgcatgtctctaacagcaaaacgaccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtggga 43083245  T
Q  366 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 431  Q
    ||||||||||||  | ||||||| ||| ||||||||||||  |||||||||||||| |||||||||    
T  43083246 atcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttacca 43083311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 266 - 438
Target Start/End: Complemental strand, 38138838 - 38138666
Alignment:
Q  266 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 365  Q
    |||||| |||| |||||||||||||||| |||||||  || |||||||||| ||||||||||||  ||  ||||||||||||||||| | ||||||||||    
T  38138838 gatgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagtggaggataagtagaaaaatcctctaccaccatggacttggtggga 38138739  T
Q  366 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttaccataaaacc 438  Q
    |||||||||| | || ||||||||||| ||||||||||||  ||||||||||| ||||||  |||| ||||||    
T  38138738 atcatcttaacaacaccagcatcaccattcttcaagaatttgggctccttctcgatttccaaaccagaaaacc 38138666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 266 - 431
Target Start/End: Complemental strand, 45984671 - 45984506
Alignment:
Q  266 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 365  Q
    |||||| |||| ||||||||||||| ||  ||||||  |||||||||||||||||||||||||   || ||||  |||||||||||||||||||||||||    
T  45984671 gatgactccaacagccacagtttgatgccagtctctgacaacaaaacggccgagtggaggatatagagagaaaggctctaccaccataggcttggtggga 45984572  T
Q  366 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 431  Q
    ||||||||||||  | ||| |||||||||| |||| ||||  |||||| |||||||||||| ||||    
T  45984571 atcatcttaataataccagtatcaccactcatcaaaaatttgggctccctctcaatttcctcacca 45984506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 266 - 425
Target Start/End: Original strand, 50911743 - 50911902
Alignment:
Q  266 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 365  Q
    |||||| |||| |||||||||||||||| |||||||  || ||||||||||||||| |||| | |  |  |||  |||||||| ||| ||||||||||||    
T  50911743 gatgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccgagtgaaggaaatttggaaaaagtctctaccaacatgggcttggtggga 50911842  T
Q  366 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttcc 425  Q
    ||||||| |||| || |||| |||||| ||||||||||||  ||||||||||||||||||    
T  50911843 atcatctcaataacaccagcgtcaccattcttcaagaatttgggctccttctcaatttcc 50911902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 248 - 427
Target Start/End: Original strand, 3300018 - 3300197
Alignment:
Q  248 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 347  Q
    |||| ||||||||| |  |||||| |||| ||||||||| |||||| | || ||  || | |||||||| ||||||||||| | || ||||  ||| |||    
T  3300018 cttcttctccacagccttgatgacaccaacagccacagtctgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaacc 3300117  T
Q  348 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttcctt 427  Q
    ||||| ||||||||||||||||||||||||  | ||||||||||  ||||||||||||  |||||||||||||| |||||    
T  3300118 accatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctt 3300197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 266 - 420
Target Start/End: Complemental strand, 7891930 - 7891776
Alignment:
Q  266 gatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtggga 365  Q
    |||||| |||| |||||||||||||||| |||||||  || ||||||| || |||| ||||||   ||  |||  |||||||||||| ||||||||||||    
T  7891930 gatgactccaatagccacagtttgacgcatgtctctgacagcaaaacgaccaagtgaaggatatgcagtaaaagtctctaccaccatgggcttggtggga 7891831  T
Q  366 atcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaa 420  Q
    ||||||||||||  | ||||||| ||| ||||||||||||  |||||||||||||    
T  7891830 atcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaa 7891776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 254 - 405
Target Start/End: Complemental strand, 43077578 - 43077427
Alignment:
Q  254 ctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccata 353  Q
    |||||||| || |||||| |||| ||||||||||||||||||||| ||   |  ||||||||| ||||||||||| | || ||||  ||| ||||||||     
T  43077578 ctccacagccgtgatgacaccaacagccacagtttgacgcttgtccctgatagtaaaacggccaagtggaggatattcagagaaagtctcaaccaccatg 43077479  T
Q  354 ggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaatt 405  Q
    ||||||||||||||||||||||||  | ||||||||||| || ||| |||||    
T  43077478 ggcttggtgggaatcatcttaataataccagcatcaccattcatcaggaatt 43077427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 267 - 437
Target Start/End: Complemental strand, 19965504 - 19965332
Alignment:
Q  267 atgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaa 366  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| | || |||| ||||||||||||||||||||| |||||    
T  19965504 atgactccaaaagccacagtttgacgcatgtctctagcaacaaaacagccgagtggaggatattgagagaaagcctctaccaccataggcttggcgggaa 19965405  T
Q  367 tcatcttaatagcagcagcat--caccactcttcaagaattcaggctccttctcaatttccttaccataaaac 437  Q
    ||||||||| | |||||||||  ||||| || |||||||| | |||  |||  |||||||||||||| |||||    
T  19965404 tcatcttaacaacagcagcatcacaccattcatcaagaatccgggcatctttgcaatttccttaccagaaaac 19965332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 273 - 431
Target Start/End: Original strand, 4230774 - 4230932
Alignment:
Q  273 ccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatct 372  Q
    |||| |||||||||||| ||| | |||||  || |||||||||| ||||||||||| | || ||||  ||| |||||||| |||||||||||||||||||    
T  4230774 ccaacagccacagtttgccgcatatctctgacagcaaaacggccaagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatct 4230873  T
Q  373 taatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 431  Q
    |||||  | ||||||| ||| |||||| ||||| |||||||||||| || |||||||||    
T  4230874 taataataccagcatctccattcttcaggaatttaggctccttctcgatctccttacca 4230932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 267 - 431
Target Start/End: Original strand, 4618992 - 4619156
Alignment:
Q  267 atgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaa 366  Q
    ||||| |||| |||||| ||| ||||  |||||||  || ||||||||||||||| |||||||| ||  |||  |||||||||||| |||||||||||||    
T  4618992 atgactccaacagccactgttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaa 4619091  T
Q  367 tcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 431  Q
    |||||||||||    ||||||||||| |||||| |||||  ||||| ||||||||| ||||||||    
T  4619092 tcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttacca 4619156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 431
Target Start/End: Complemental strand, 4788400 - 4788273
Alignment:
Q  304 caacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaa 403  Q
    |||||||| |||| |||||||||||   |  ||||  |||||||||||||||||||||||||| ||||| ||||  | || |||||||| ||||||||||    
T  4788400 caacaaaatggccaagtggaggatatagatagaaaggctctaccaccataggcttggtgggaaccatctcaataagaccatcatcaccattcttcaagaa 4788301  T
Q  404 ttcaggctccttctcaatttccttacca 431  Q
    | |||||  || ||||||| ||| ||||    
T  4788300 tgcaggcctctcctcaattacctaacca 4788273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 4296780 - 4296853
Alignment:
Q  304 caacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatcttaata 377  Q
    |||||||||||| |||||||||| |   || ||||  |||||||||||||| || |||||||||||||||||||    
T  4296780 caacaaaacggctgagtggaggagatagagagaaaggctctaccaccatagactcggtgggaatcatcttaata 4296853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 431
Target Start/End: Complemental strand, 7530255 - 7530072
Alignment:
Q  248 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 347  Q
    |||| ||||||||| |  |||||| |||| ||| |||||||||||| |||| ||  || ||||||| || || |||||||| | ||| ||   ||| |||    
T  7530255 cttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacagcaaaacgtccaagaggaggatattcagcaaaggtctcaacc 7530156  T
Q  348 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 431  Q
    ||||| ||||||||||||| |||||||||   | ||||||||||| |||||||||| |  |||||||||||||| |||||||||    
T  7530155 accatgggcttggtgggaaccatcttaatgataccagcatcaccattcttcaagaacttgggctccttctcaatctccttacca 7530072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 431
Target Start/End: Complemental strand, 7520718 - 7520535
Alignment:
Q  248 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 347  Q
    |||| ||||||||| |  |||||| |||| ||| |||||||||||| |||| ||  |  ||||||| || || |||||||| | ||||||   ||| |||    
T  7520718 cttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacggcaaaacgtccaagaggaggatattcagcgaaggtctcaacc 7520619  T
Q  348 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttacca 431  Q
    ||||| ||||||||||||| |||||||||   | ||||||||||  |||||||||| |  |||||||||||||| |||||||||    
T  7520618 accatgggcttggtgggaaccatcttaatgataccagcatcaccgttcttcaagaacttgggctccttctcaatctccttacca 7520535  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 443
Target Start/End: Original strand, 16348456 - 16348626
Alignment:
Q  273 ccaaaagccacagtttgacgcttgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatct 372  Q
    |||| ||||||||||||| || | |||||  ||| |||||||||||||| |||||| | ||  |||  |||||||||||| |||||||||||||||||||    
T  16348456 ccaatagccacagtttgatgcgtatctctgacaataaaacggccgagtgaaggatattcagaaaaagtctctaccaccatgggcttggtgggaatcatct 16348555  T
Q  373 taatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttaccataaaaccagtct 443  Q
     ||||    || |||||||  ||||||||||||  ||||||||| |||||  ||| ||| |||||| ||||    
T  16348556 gaataatgccaccatcacctttcttcaagaatttgggctccttcacaattatcttgccagaaaacctgtct 16348626  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 32867597 - 32867656
Alignment:
Q  62 ttaataggtaaaatctgttcctagcaatactgaaattcaaatttaaaatttctgttatac 121  Q
    ||||||||||||||||||||  | |||||||| |||| || ||||||| |||||||||||    
T  32867597 ttaataggtaaaatctgttctcaacaatactgtaatttaagtttaaaaattctgttatac 32867656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 32867697 - 32867753
Alignment:
Q  148 cagaatcataggtcttcttcctcttctgatattgtttttccacaaatacatccatatca 206  Q
    |||||||| ||||||||  ||||||||||||||||||| |||||||| ||||| |||||    
T  32867697 cagaatcaaaggtcttc--cctcttctgatattgttttcccacaaatgcatccgtatca 32867753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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