View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_11 (Length: 459)
Name: NF0589_low_11
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 30 - 415
Target Start/End: Original strand, 38437550 - 38437935
Alignment:
| Q |
30 |
gatgtacgtaccaatacccaccttgttgtatagaaaagatgcatcaacatcatagagaatggttgttttgacgcaatagtaaattaaccaattgaatatc |
129 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
38437550 |
gatgcacgtaccaatacccaccttgttgtatagaaaagatgcatcagcatcatagagaatggttgttttgacacaatagtaaaataaccaattgaatatc |
38437649 |
T |
|
| Q |
130 |
tcaagaaaattctcatagtaaaatacattgtttctaaacattgtaagatcaataaatcatcattatgcatgacacgccacctttgcaatgtgaaaattat |
229 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38437650 |
tcaaaaaaattctcatagtaaaatacattgtttctaaacattgtaagatcaataaatcatcattatgcatgacatgccacctttgcaatgtgaaaattat |
38437749 |
T |
|
| Q |
230 |
aaaatgttttaaggctcataccacctttcttttccttatgtaatatctctcatctaatccaatggattctaccactccttgtttgctatcccaacaaaaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38437750 |
aaaatgttttaaggctcataccacctttcttttccttacgtaatatctctcatctaatccaatggattctaccactccttgtttgctatcccaacaaaaa |
38437849 |
T |
|
| Q |
330 |
cttactagtcatgcattcaatgtgctcataaactcatatgaagtagaaaacaactcataacttacgtatgaagtgcttgaaccatt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38437850 |
cttactagtcatgcattcaatgtgctcataaactcatatgaagtagaaaacaactcataacttacgtatgaagtgcttgaaccatt |
38437935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 413
Target Start/End: Original strand, 3348885 - 3349072
Alignment:
| Q |
231 |
aaatgttttaaggctcataccacctttc---ttttccttatgtaatatctctcatctaatccaatggattctac-cactccttgtttgctatcccaacaa |
326 |
Q |
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||||||| ||| ||| || ||||||||| ||||||||| ||| |||||||| ||||||||| ||| ||| | | |||||||||||| |||||| | |
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| T |
3348885 |
aaatgttctaaagcttattccacctttcattttttccttacataacgtctctcatttaatccaataaattttacactcaccttgtttgcta-cccaacca |
3348983 |
T |
|
| Q |
327 |
aaacttactagtcatgcattcaatgtgctca--taaactcatatgaagtagaaaacaactcataacttacgtatgaagtgcttgaacca |
413 |
Q |
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|||||||||||||| |||||||| | |||| ||||| ||| ||||||||||||||||||| || ||| || ||| ||| ||||||| |
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| T |
3348984 |
gaacttactagtcatccattcaatattctcacataaacccatcagaagtagaaaacaactcatcacatacataggaattgcctgaacca |
3349072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 413
Target Start/End: Complemental strand, 7102585 - 7102477
Alignment:
| Q |
306 |
ccttgtttgctatcccaacaaaaacttactagtcatgcattcaatgtgctca--taaactcatatgaagtagaaaacaactcataacttacgtatgaagt |
403 |
Q |
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|||||||||||| |||| || || ||||||| |||| | |||||| |||||| ||||| ||| ||||| ||||||||||||| || |||||||||| |
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| T |
7102585 |
ccttgtttgctaccccaccagaa-cttactaatcatactttcaatatgctcacataaacccatcggaagtcgaaaacaactcatcacatacgtatgaata |
7102487 |
T |
|
| Q |
404 |
gcttgaacca |
413 |
Q |
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|||||||||| |
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|
| T |
7102486 |
gcttgaacca |
7102477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 729387 - 729465
Alignment:
| Q |
338 |
tcatgcattcaatgtgctc--ataaactcatatgaagtagaaaacaactcataacttacgtatgaagtgcttgaaccatt |
415 |
Q |
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|||||| |||||| ||||| |||||||||| |||||||||||||| |||| || |||||| ||| ||||||||||||| |
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| T |
729387 |
tcatgctttcaatatgctcgcataaactcatcggaagtagaaaacaa-tcatcacatacgtaggaattgcttgaaccatt |
729465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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