View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_13 (Length: 427)
Name: NF0589_low_13
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 202 - 350
Target Start/End: Original strand, 34094983 - 34095130
Alignment:
| Q |
202 |
gggttcccaaaacaataagaccccccaaaagcattacacacatataccaaaatgtcctttcaccaattttcaccaacacattctgattttccttttcctt |
301 |
Q |
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| T |
34094983 |
gggtccccaaaacaataagaccctccaaaagcattacacacatataccaaaatgtcctttcaccaattttcaccaacacattctgattttccttttcctt |
34095082 |
T |
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| Q |
302 |
cataaaataaaaccctcacacnnnnnnnctatataaacacacaaaacac |
350 |
Q |
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| T |
34095083 |
cataaaataaaaccctcacac-ttttttctatataaacacacaaaacac |
34095130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 34094799 - 34094887
Alignment:
| Q |
16 |
atatagtcctacaaaataaaccaaaatgcaaatcttaaaattaaggattagcaacaagagagagtgtgtccacatgtgataaataaaattat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34094799 |
atatagtcctacaaaataaaccaaaatgcaaatcttaaaattaaggat---aaacaagagagagtgtgtccacatgtgataaataaaattat |
34094887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 343 - 421
Target Start/End: Original strand, 2140254 - 2140332
Alignment:
| Q |
343 |
caaaacaccagcttcttcaccagctccaccaccatcttcaaagaccaagccaactccaatagtcaaatcatggaagggt |
421 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2140254 |
caaaacaccagcttcttcaccagctccaccaccaacttcaaagaccaagccaactccaatagtcaaatcatggaagggt |
2140332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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