View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_15 (Length: 411)
Name: NF0589_low_15
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 160 - 401
Target Start/End: Complemental strand, 12921238 - 12920997
Alignment:
| Q |
160 |
atgcaatattcagatgaatgccattaatgcaagaaggcctcggggttgtggtgaagaccatattcatgctaaaaaccaaaacttagcaggttttgcaatc |
259 |
Q |
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| T |
12921238 |
atgcaatattcagatgaatgccattaatgcaagaaggtctcggggttgtggtgaagaccgttttcatgctaaaaaccaaaaactagcaggttttgcaatc |
12921139 |
T |
|
| Q |
260 |
gtattaatcataccattgatttttgtcaccaaaagcattgttaccctaacatcaataaacaacagtcacgtgtaaatgctgtttctgaagaagattctga |
359 |
Q |
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| T |
12921138 |
gttttaatcataccgttgatttttgtcaccaaaagcattgttaccctaacatcaataaacaacagtcacgtgtaaatgctgtttctcaagaagattctga |
12921039 |
T |
|
| Q |
360 |
tgcaaacaattcatccactcccattttcatgccgaacctatg |
401 |
Q |
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| T |
12921038 |
tgcaaacaattcatccactcccattttcatgccgaacctatg |
12920997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 12921394 - 12921310
Alignment:
| Q |
1 |
ttttaaaacaagatacagatattttaacacaagtaaatatatcataactannnnnnnnnnctttctagtcatggtaaaaaatgtat |
86 |
Q |
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| T |
12921394 |
ttttaaaacaagatacagatattttaacacaagaaaatatatcataacta-tttttttttctttctagtcatggtaaaaaatgtat |
12921310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 12890707 - 12890666
Alignment:
| Q |
2 |
tttaaaacaagatacagatattttaacacaagtaaatatatc |
43 |
Q |
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| T |
12890707 |
tttaaaacgagatacaaatattttaacgcaagtaaatatatc |
12890666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 12884682 - 12884638
Alignment:
| Q |
2 |
tttaaaacaagatacagatattttaacacaagtaaatatatcata |
46 |
Q |
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| T |
12884682 |
tttaaaatgagatacagatattttaacgcaagtaagtatatcata |
12884638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 379
Target Start/End: Original strand, 11923307 - 11923400
Alignment:
| Q |
287 |
accaaaagcattgttaccctaacatcaataaacaacagtcac-gtgtaaatgctgtttctgaagaagattctgatgcaaacaattcatccactc |
379 |
Q |
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||||||||||| | || || ||| ||||||||||||| | | ||||||||| ||||||| ||||||||| |||||||| |||||||| |||| |
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| T |
11923307 |
accaaaagcatggctatcccaacgtcaataaacaacattttctgtgtaaatgttgtttctcaagaagattatgatgcaagaaattcatcaactc |
11923400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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