View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_16 (Length: 411)
Name: NF0589_low_16
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 34239952 - 34240331
Alignment:
| Q |
1 |
tccatcacagtcaaaaagaagagctgagggaagcgtggaagatgctgaagccgaggctgagcaactcaacctacgtcttctggttgttgaagttgatatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34239952 |
tccatcacagtcaaaaagaagagctgagggaagcgtggaagatgctgaagccgaggctgagcaactcaacctacgtcttctggttgttgaagttgatatc |
34240051 |
T |
|
| Q |
101 |
ttaagagctttgacagtgaaagaggatggtgaagtactgtgttgttcatgctccttcttgttgtgtttaaggaggctaataagtgttgttgtttttggtt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240052 |
ttaagagctttgacagtgaaagaggatggtgaagtactgtgttgttcatgctccttcttgttgtgtttaaggaggctaataagtgttgttgtttttggtt |
34240151 |
T |
|
| Q |
201 |
gatgagttcgattcaacaatgaagcagatgaaatggagatgatgctatttactgatgccatggccattgccttagcttttccttgcaaaccaaatcatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240152 |
gatgagttcgattcaacaatgaagcagatgaaatggagatgatgctatttgctgatgccatggccattgccttagcttttccttgcaaaccaaatcatca |
34240251 |
T |
|
| Q |
301 |
cacacatttcaattactacttatctgcttcctatggagtgggaccgttaattgtggttttcaacttccaacacaggttct |
380 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240252 |
cacacatttcaattactacttatctgcttcctatggagtgggaccgttaattgtggttttcaacttccaacacaggttct |
34240331 |
T |
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