View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_17 (Length: 408)
Name: NF0589_low_17
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 12 - 403
Target Start/End: Original strand, 30272207 - 30272598
Alignment:
| Q |
12 |
caatagacattgcagcaaattacttagtagtacctttggcagataaggattctcttcatcatcaaaggccttcctcagaatatacttctcaattcgtcct |
111 |
Q |
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| T |
30272207 |
caatagacattgcagcaaattacttagtagtacctttggcagataaggattctcttcatcatcgaaggccttcctcagaatatacttctcaattcgtcct |
30272306 |
T |
|
| Q |
112 |
tcatcnnnnnnnatctggacgttttaaacaaaccagcttagttagtacccgcgaaaacatttcctgttttccaagatttgtacaagaaacactaaaaaca |
211 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30272307 |
tcatctttttttatctgcacgttttaaacaaaccagcttagttagtacccgcgaaaacatttcctgttttccaagatttgtacaagaaacactaaaaaca |
30272406 |
T |
|
| Q |
212 |
actattatgttttcggtatttcctgtagaattattgaatcaacagagtaacactaattactcataccattttattctcaggatcaatattcattgcaaca |
311 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30272407 |
actattatgttttcggtatttcatgtagaattattgaatcaacagagtaacactaattactcataccattttattctcaggatcaatattcattgcaaca |
30272506 |
T |
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| Q |
312 |
ttgataaactccttgtccaaaaatggaactctggcttctaaaccccaagcaaaggttgatttatttgctctctggcaatcatattgttggag |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30272507 |
ttgataaactccttgtccaaaaatggaactctggcttctagaccccaagcaaaggttgatttatttgctctctggcaatcatattggtggag |
30272598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 272 - 383
Target Start/End: Original strand, 25965072 - 25965183
Alignment:
| Q |
272 |
tcataccattttattctcaggatcaatattcattgcaacattgataaactccttgtccaaaaatggaactctggcttctaaaccccaagcaaaggttgat |
371 |
Q |
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|||||||||||| | |||||||||||| | ||||||||| |||||||| ||||||||||||||||| || || ||||||| ||||| ||| | |||||| |
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| T |
25965072 |
tcataccattttgtactcaggatcaatgtccattgcaactttgataaaatccttgtccaaaaatggtaccctagcttctagtccccatgcatatgttgat |
25965171 |
T |
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| Q |
372 |
ttatttgctctc |
383 |
Q |
| |
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|||||||||||| |
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|
| T |
25965172 |
ttatttgctctc |
25965183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 25964904 - 25964977
Alignment:
| Q |
40 |
agtacctttggcagataaggattctcttcatcatcaaaggccttcctcagaatatacttctcaattcgtccttc |
113 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||| |||||| |
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| T |
25964904 |
agtaccttaggcagataaggattctcttcatcatcaaaagccttccttagaatccatttctcaattcttccttc |
25964977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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