View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0589_low_2 (Length: 669)
Name: NF0589_low_2
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 241 - 607
Target Start/End: Original strand, 40164276 - 40164642
Alignment:
| Q |
241 |
ctatatagaggaagagcataataacctctactgatacaaatgagagaagtcacgtataaggtatacaaatacaacaattacacgtattcgtttacagaat |
340 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40164276 |
ctatatagaggaagagtataataacctctactgatacaaatgagagaagtcacgtatacggtatacaaatacaacaattacacgtattcgtttacagaat |
40164375 |
T |
|
| Q |
341 |
aatatctcttcttacaccgaaattatactgatttcttcgtagattctgttgccttttcttgtacaccatccctgccaacataagcacactcgctgcaacg |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40164376 |
aatatctcttcttacaccgaaattatactgatttcttcgtagattctgttgccttttcttgtacaccatccctgccaacataagcacactcgctgcaacg |
40164475 |
T |
|
| Q |
441 |
attattccgatagctatccctgctttcttgcttccgctcattcctccttcggttgatgaatcttctgttttctcgtcaacgtcgatgtggtttagtgatg |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40164476 |
attattccgatagctatccctgctttcttgcttccgctcattcctccttcggttgatgaatcttctgttttctcgtcaacgtcgatgtggtttagtgatg |
40164575 |
T |
|
| Q |
541 |
ttgaatcctccggcgaaggtaccggagcgggaattggacttggatttaacggagacggcgctggagg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40164576 |
ttgaatcctccggcgaaggtaccggagcgggaattggacttggatttaacggagacggtgctggagg |
40164642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 40164048 - 40164214
Alignment:
| Q |
16 |
atatccaattgaattgaattcactaaatact---acaaacaaataatatacgataatattatacacaaaaattgagtttctttattacaacaaaatcgaa |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40164048 |
atatccaattgaattgaattcaccaaatactactacaaacaaataatataccataatattacacacaaaaattgagtttctttattacaacaaaatcgaa |
40164147 |
T |
|
| Q |
113 |
gagaaaaaagtgatgataatatagaaattcgaaaaatatatttccatcatcacatatcaacaagaac |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40164148 |
gagaaaaaagtgatgataatatagaaattcgaaaaatatatttccatcatcacatattaacaagaac |
40164214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 601 - 640
Target Start/End: Original strand, 40164651 - 40164690
Alignment:
| Q |
601 |
ctggaggagaactcgccggaggatagtatggagatggagt |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40164651 |
ctggaggagaactcgccggaggatagtatggagatggagt |
40164690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2849 times since January 2019
Visitors: 3829