View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_21 (Length: 382)
Name: NF0589_low_21
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 7535352 - 7535091
Alignment:
| Q |
19 |
caacaatatcgtgctgggttgtataaccgaagggctagtggatcttatcgatataaacatgctagttcaaatagttcgtacaaaggcacactcgtagaag |
118 |
Q |
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| T |
7535352 |
caacaaaatcgtgctgggttgtataaccgaagggctagtggatcttatcgatataaacatgctagttcaaatagttagtacaaaggcacactcgtagaag |
7535253 |
T |
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| Q |
119 |
tactagatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgttt |
218 |
Q |
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| T |
7535252 |
tactagatagtttttgcagggatggtaaagtgaatgaagcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgttt |
7535153 |
T |
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| Q |
219 |
gcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagac |
280 |
Q |
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| T |
7535152 |
gcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagac |
7535091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 34 - 280
Target Start/End: Complemental strand, 7449796 - 7449553
Alignment:
| Q |
34 |
gggttgtataaccgaagggctagtggatcttatcgatataaacatgctagttcaaatagttcgtacaaaggcacactcgtagaagtactagatagttttt |
133 |
Q |
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| T |
7449796 |
gggttgtataacctatgggaaagtggatcttatcgggataaacttgctagttcaggtagtttgtataacggcacacttgaggaa---ctagatagttttt |
7449700 |
T |
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| Q |
134 |
gcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgt |
233 |
Q |
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| T |
7449699 |
gcagggatggtaaagtgaaggaagcagttgaaaatttgcaaaagttggaaaagcttcatattcatgtggatttgcagcgttgtttgcaattaatgcgcat |
7449600 |
T |
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| Q |
234 |
ttgtgggaagactaagtctcttgaagaggcaagagttgtacacagac |
280 |
Q |
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| T |
7449599 |
ttgtgggaaggctaagtctcttgaggaggcaagagttgtacacagac |
7449553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 124 - 279
Target Start/End: Complemental strand, 18664698 - 18664543
Alignment:
| Q |
124 |
gatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaat |
223 |
Q |
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| T |
18664698 |
gatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcttgtagatttggatcgttgtttgcgat |
18664599 |
T |
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| Q |
224 |
taatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacaga |
279 |
Q |
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| T |
18664598 |
taatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacaga |
18664543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 277
Target Start/End: Complemental strand, 18664955 - 18664845
Alignment:
| Q |
167 |
ttttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaag |
266 |
Q |
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| T |
18664955 |
ttttgcaagagttagaaaagcttcatacttatgtggatttgtatctttgtttgcgattaatgcaactgtgtggaaaggctgagtttcttgaagaggcaaa |
18664856 |
T |
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| Q |
267 |
agttgtacaca |
277 |
Q |
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| T |
18664855 |
agttgtacaca |
18664845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 124 - 279
Target Start/End: Original strand, 15079130 - 15079285
Alignment:
| Q |
124 |
gatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaat |
223 |
Q |
| |
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||||||| ||||| ||| ||| ||||||| ||| | |||| ||||||||||||| |||||| || |||||||| | |||||| | ||||||||| || |
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| T |
15079130 |
gatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcatgtagatttggatcgttgtttgagat |
15079229 |
T |
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| Q |
224 |
taatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacaga |
279 |
Q |
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| T |
15079230 |
taatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacaga |
15079285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 15078873 - 15078985
Alignment:
| Q |
167 |
ttttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaag |
266 |
Q |
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||||||||| ||| ||||||||| ||| | || |||||||| | | |||||||| ||||||||| | ||||| ||| || ||| |||||||||||||| |
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| T |
15078873 |
ttttgcaagagttagaaaagcttcatacttatgtggatttgtatctttgtttgcgattaatgcaactgtgtggaaaggctgagtttcttgaagaggcaaa |
15078972 |
T |
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| Q |
267 |
agttgtacacaga |
279 |
Q |
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||||||||||||| |
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| T |
15078973 |
agttgtacacaga |
15078985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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