View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_25 (Length: 365)
Name: NF0589_low_25
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 5675214 - 5675539
Alignment:
| Q |
11 |
caaaggatgcaagtgcaaatgcttcagcaccagcagaacaatagtgcacttagaatattataaaaaagcctcttttggaaacaataattctatgtccatt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5675214 |
caaaggatgcaagtgcaaatgcttcagcaccagcagaacaatagtgcacttagaatattataaaaacgcctcttttggaaacaataattctatgtccatt |
5675313 |
T |
|
| Q |
111 |
tataatcaagactagtccaaatgattagaaactttaaaatcttatctatcccgccaccaacatcattggtagtatggttccaataaagttagtaatgaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5675314 |
tataatcaagactagtccaaatgattagaaactttaaaatcttatctatcccgccaccaacatcattggtagtatggttccaataaagttagtaatgaag |
5675413 |
T |
|
| Q |
211 |
ccctagaccgaaaaatttgcttcattggttaggtacaatgagatcatcccaataacctgtaattaagtcaaagccgggaataacattcaccatggtttca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5675414 |
ccctagaccgaaaaatttgcttcattggttaggtacaatgagatcatcccaataacctgtaattaagtcaaagccgggaataacattcaccatggtttca |
5675513 |
T |
|
| Q |
311 |
tcttgttggttgtgaccgctgcaatt |
336 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
5675514 |
tcttgttggttgtgaccgctgcaatt |
5675539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 5663563 - 5663888
Alignment:
| Q |
11 |
caaaggatgcaagtgcaaatgcttcagcaccagcagaacaatagtgcacttagaatattataaaaaagcctcttttggaaacaataattctatgtccatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
5663563 |
caaaggatgcaagtgcaaatgcttcagcaccagcagaataatagtgcacttagaatattataaacatgcctcttttggaaacaataattctatgtccatt |
5663662 |
T |
|
| Q |
111 |
tataatcaagactagtccaaatgattagaaactttaaaatcttatctatcccgccaccaacatcattggtagtatggttccaataaagttagtaatgaag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5663663 |
tataatcaagactagtccaaatgattagaaactttaaaatcttatctatccagccaccaacatcattggtagtatggtttcaataaagttagtaatgaag |
5663762 |
T |
|
| Q |
211 |
ccctagaccgaaaaatttgcttcattggttaggtacaatgagatcatcccaataacctgtaattaagtcaaagccgggaataacattcaccatggtttca |
310 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5663763 |
ccctagaccgaaaaatttgcttcattggttaggtacaatgagatcatcccaataaactgtaattaagtcaaagccgggaataacattcaccatggtttca |
5663862 |
T |
|
| Q |
311 |
tcttgttggttgtgaccgctgcaatt |
336 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
5663863 |
tcttgttggttgtgaccgctgcaatt |
5663888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 5684713 - 5685038
Alignment:
| Q |
11 |
caaaggatgcaagtgcaaatgcttcagcaccagcagaacaatagtgcacttagaatattataaaaaagcctcttttggaaacaataattctatgtccatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684713 |
caaaggatgcaagtgcaaatgcttcagcaccaccagaacaatagtgcacttagaatattataaaaaagcctcttttggaaacaataattctatgtccatt |
5684812 |
T |
|
| Q |
111 |
tataatcaagactagtccaaatgattagaaactttaaaatcttatctatcccgccaccaacatcattggtagtatggttccaataaagttagtaatgaag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
5684813 |
tataatcaagactagtccaaatgattagaaactctaaaatcttatctatcccgccaccgacatcattggtagtatggttccaataaagtttgtaatgaag |
5684912 |
T |
|
| Q |
211 |
ccctagaccgaaaaatttgcttcattggttaggtacaatgagatcatcccaataacctgtaattaagtcaaagccgggaataacattcaccatggtttca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
5684913 |
ccctagaccgaaaaatttgcttcattggttaggtacaatgagatcatcccaataacctgttattaagtcaaagcagggaataacattcaccatggtttca |
5685012 |
T |
|
| Q |
311 |
tcttgttggttgtgaccgctgcaatt |
336 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
5685013 |
tcttgttggttgtgaccgctgcaatt |
5685038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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