View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0589_low_26 (Length: 362)
Name: NF0589_low_26
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 3193782 - 3194092
Alignment:
| Q |
1 |
ttcttctcatctgtgtgtatctgcaacatcacccgctcaaaccccaacaacaccgctctctcttcctctccttatatcaccaccattcacagattcagat |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3193782 |
ttcttctcatatgtgtgtatctgcaacatcacccgctcaaaccccaacaacaccgctctctcttcctctccttatatcaccaccattcatggattcagat |
3193881 |
T |
|
| Q |
101 |
gcaactccttcgattcgatcacagctacaatgaattggtaacaatttcgtatatcgttgatctttacatgtgtaaactatttctcttttccattttcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
3193882 |
gcaactccttcgattcgatcacagctacaatgaattggtaacaatttcgtatttcgttgatcttcacatgtgtaaa------cttttttccattttcaaa |
3193975 |
T |
|
| Q |
201 |
cgatggtaaaagtagcatgataatg---aaatagacattcataaaaacttcgaactagccttagttttattagactagagtttcggataagatagggtta |
297 |
Q |
| |
|
| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
3193976 |
ccatggtaaaagtagcatgatattgaaaaaatagacattcataaatacttcgaactagccttagtcttattagactagagtttcaaataagatagggtta |
3194075 |
T |
|
| Q |
298 |
tttatgtttgatttcat |
314 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3194076 |
tttatgtttgatttcat |
3194092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 3214329 - 3214568
Alignment:
| Q |
1 |
ttcttctcatctgtgtgtatctgcaacatcacccgctcaaaccccaacaacaccgctctctcttcctctccttatatcaccaccattcacagattcagat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
3214329 |
ttcttctcatctgtgtgtatctccaaaatcatacgctcaaaccccaacaacaccgctccctcttcctctccctatat---caccattcacggattcagat |
3214425 |
T |
|
| Q |
101 |
gcaactccttcgattcgatcacagctacaatgaattggtaacaatttcgtatatcgttgatctttacatgtgtaaactatttctcttttccattttcaaa |
200 |
Q |
| |
|
| |||||| |||||||||||||||| |||| |||||| || ||||||| ||||||||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
3214426 |
gtaactcc-----ttcgatcacagctacagtgaaatggtaagaaattcgtatttcgttgatctttagatgtgtaaacta------ttttcaattttcaaa |
3214514 |
T |
|
| Q |
201 |
cgatggtaaaagtagcatgataatgaaatagacattcataaaaacttcgaacta |
254 |
Q |
| |
|
|| ||| ||||| | |||||| |||||| ||| |||||||| |||| |||||| |
|
|
| T |
3214515 |
cggtggaaaaagcatgatgatattgaaattgactttcataaacactttgaacta |
3214568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 3210845 - 3210965
Alignment:
| Q |
3 |
cttctcatctgtgtgtatctgcaacatcacccgctcaaaccccaacaacaccgctctctcttcctctccttatatcaccaccattcacagattcagatgc |
102 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| |||||| |||||||||||||||| |||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
3210845 |
cttctcatctgtatgtatctccaacatcacccgcccaaacctcaacaacaccgctctcccttcctctccttatat---catcattcacggattcagatgc |
3210941 |
T |
|
| Q |
103 |
aactccttcgattcgatcacagct |
126 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3210942 |
aactccttcgattcgatcacagct |
3210965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2341 times since January 2019
Visitors: 3818