View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_29 (Length: 341)
Name: NF0589_low_29
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 29 - 330
Target Start/End: Original strand, 34297506 - 34297804
Alignment:
| Q |
29 |
acaatatctatatgttgaaatattatcagatacatgtataaaaatagtttatgccgacattaatgtatacaaatcaaattcttataatatataccctgtn |
128 |
Q |
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| T |
34297506 |
acaatatctatatgttgaaatattatcagatgcatgtataaaaatagtttatgccgacattaatgtatacaaatcaaattcttataatatataccctgta |
34297605 |
T |
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| Q |
129 |
nnnnnnttaaatctatataacatgtgtacagaaaatcatttaaagaaaattaaatttttgtaatacttacattcatatatcttttctcaataatttcaat |
228 |
Q |
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| T |
34297606 |
aaaaaattaaatctatataacatgt--acagcaaatcatttaaaaaaaattaaatttt-gtattacttacattcatatatcttttctcaacaatttcaat |
34297702 |
T |
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| Q |
229 |
tgtgagatgctctagattagggcagctgtttagcatgaatgtgattccttcaaactcaaactggtgcaaagaggtcttcattatcaaatgtttcaccttc |
328 |
Q |
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| T |
34297703 |
tgtgagatgctcaagattggggcagctgtttagcatgaatgtgattccctaaaactcaaactggtgcaaagaggtcttcattatcatatgtttcaccttc |
34297802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 31 - 330
Target Start/End: Original strand, 34288204 - 34288501
Alignment:
| Q |
31 |
aatatctatatgttgaaatattatcagatacatgtataaaaatagtttatgccgacattaatgtatacaaatcaaattcttataatatataccctgtnnn |
130 |
Q |
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| T |
34288204 |
aatatctatatgttggaatataatcagataaatgtataaaaacaatttatgccgacattgatgtatacaaattaaattcttataatatatgccctcttaa |
34288303 |
T |
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| Q |
131 |
nnnnttaaatctatataacatgtgtacagaaaatcatttaaagaaaattaaatttttgtaatacttacattcatatatcttttctcaataatttcaattg |
230 |
Q |
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| T |
34288304 |
aaaattaaatctatataacatat--acaccaaatcattcaaatcaaattaaatttttgtaatacttacattcatatattttttctcaacaatttcaattg |
34288401 |
T |
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| Q |
231 |
tgagatgctctagattagggcagctgtttagcatgaatgtgattccttcaaactcaaactggtgcaaagaggtcttcattatcaaatgtttcaccttcat |
330 |
Q |
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| T |
34288402 |
tgagatgctctaggttagggcagctctttagcatgaatgcgattccctcaaactcaagcgggtgcaaaaaggtcttcattatcaaatgtttcaccttcat |
34288501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 35 - 329
Target Start/End: Original strand, 34281800 - 34282089
Alignment:
| Q |
35 |
tctatatgttgaaatattatcagatacatgtataaaaatagtttatgccgacattaatgtatacaaatcaaattcttataatatataccctgtnnnnnnn |
134 |
Q |
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| T |
34281800 |
tctatatgttgaaatataatcagatacatgtataaaaatagtttacgtcaacattaatgta-acaaattaaattcttataatatatttcctc-aaaaaaa |
34281897 |
T |
|
| Q |
135 |
ttaaatctatataacatgtgtacagaaaatcatttaaagaaaattaaatttttgtaatacttacattcatatatcttttctcaataatttcaattgtgag |
234 |
Q |
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| T |
34281898 |
ttaaatctatataacatatatatc--aaatcatttaaa-aaaattaaaattttgtaatacttaccttcatatatttttcttcaacaatttcaattgcgag |
34281994 |
T |
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| Q |
235 |
atgctctagattagggcagctgtttagcatgaatgtgattccttcaaactcaaactggtgcaaagaggtcttcattatcaaatgtttcaccttca |
329 |
Q |
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| T |
34281995 |
atactctaagttagggcaactcgttagcataaatgtgatttcctcaaacttaaactaatgtaaagaggtcttcattatcaaatgtttcaccttca |
34282089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 318
Target Start/End: Original strand, 28248981 - 28249124
Alignment:
| Q |
175 |
aaattaaatttttgtaatacttacattcatatatcttttctcaataatttcaattgtgagatgctctagattagggcagctgtttagcatgaatgtgatt |
274 |
Q |
| |
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|||| |||||| ||||||||||||| ||| ||||| |||| |||||||||||||||| |||||| | ||||||||| ||||||| || | | | |
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| T |
28248981 |
aaatcaaatttatgtaatacttacaaacatgcgtctttcgtcaacaatttcaattgtgagacgctctaagtaagggcagcttcttagcataaaagatact |
28249080 |
T |
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| Q |
275 |
ccttcaaactcaaactggtgcaaagaggtcttcattatcaaatg |
318 |
Q |
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| T |
28249081 |
cccacaaactcaaaatggtgcaaagcggtcttcattatcaaatg |
28249124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 330
Target Start/End: Original strand, 10330846 - 10330966
Alignment:
| Q |
210 |
ttttctcaataatttcaattgtgagatgctctagattagggcagctgtttagcatgaatgtgattccttcaaactcaaactggtgcaaagaggtcttcat |
309 |
Q |
| |
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|||| |||| |||||||||||||||| | |||| | ||||| || ||||||||||||| |||||| ||||||||| | |||||||| |||||||| |
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| T |
10330846 |
ttttatcaacaatttcaattgtgagacgttctaagtcggggcaactctttagcatgaatgagattcccataaactcaaatttgtgcaaagcagtcttcat |
10330945 |
T |
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| Q |
310 |
tatcaaatgtttcaccttcat |
330 |
Q |
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||||||||| |||||| |||| |
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| T |
10330946 |
tatcaaatgcttcaccctcat |
10330966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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