View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0589_low_3 (Length: 636)

Name: NF0589_low_3
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0589_low_3
NF0589_low_3
[»] chr1 (20 HSPs)
chr1 (383-636)||(31032180-31032434)
chr1 (79-383)||(31032587-31032898)
chr1 (84-259)||(29095546-29095718)
chr1 (84-255)||(34475902-34476070)
chr1 (85-259)||(1270175-1270346)
chr1 (84-259)||(20808950-20809122)
chr1 (85-259)||(9098593-9098761)
chr1 (91-224)||(24135765-24135893)
chr1 (84-259)||(16254858-16255029)
chr1 (121-259)||(47550831-47550966)
chr1 (142-221)||(2958753-2958832)
chr1 (84-228)||(34807939-34808080)
chr1 (84-228)||(42480124-42480265)
chr1 (85-259)||(45010204-45010374)
chr1 (137-255)||(44714836-44714954)
chr1 (84-205)||(4194769-4194887)
chr1 (92-169)||(41646587-41646660)
chr1 (177-228)||(4624438-4624489)
chr1 (213-259)||(41647356-41647402)
chr1 (143-236)||(27143605-27143698)
[»] chr5 (19 HSPs)
chr5 (84-259)||(32891177-32891349)
chr5 (85-259)||(4391869-4392040)
chr5 (85-259)||(37093935-37094106)
chr5 (82-259)||(8692509-8692683)
chr5 (115-230)||(3456786-3456898)
chr5 (84-227)||(11739275-11739415)
chr5 (84-259)||(34286597-34286768)
chr5 (84-229)||(228026-228168)
chr5 (84-227)||(38614236-38614380)
chr5 (84-240)||(41326491-41326644)
chr5 (90-231)||(29223474-29223610)
chr5 (161-259)||(40925912-40926010)
chr5 (90-257)||(28434210-28434374)
chr5 (163-236)||(6614293-6614366)
chr5 (85-241)||(35672352-35672504)
chr5 (146-259)||(5481414-5481527)
chr5 (118-239)||(16516960-16517078)
chr5 (101-227)||(31644658-31644769)
chr5 (85-125)||(43141523-43141563)
[»] chr3 (20 HSPs)
chr3 (84-259)||(38176413-38176585)
chr3 (84-259)||(45166229-45166401)
chr3 (84-256)||(521791-521960)
chr3 (87-255)||(1561283-1561448)
chr3 (84-258)||(50612899-50613070)
chr3 (84-254)||(31788308-31788475)
chr3 (84-254)||(36517517-36517684)
chr3 (84-259)||(23643003-23643175)
chr3 (82-259)||(39145252-39145426)
chr3 (91-259)||(20912177-20912342)
chr3 (84-224)||(34624535-34624671)
chr3 (85-257)||(52546746-52546915)
chr3 (85-234)||(51297074-51297219)
chr3 (118-228)||(9496567-9496674)
chr3 (164-228)||(22650450-22650514)
chr3 (90-134)||(544643-544687)
chr3 (84-154)||(43203251-43203318)
chr3 (453-514)||(10755806-10755867)
chr3 (143-179)||(29011343-29011379)
chr3 (143-206)||(38169328-38169389)
[»] chr2 (19 HSPs)
chr2 (84-259)||(13685996-13686168)
chr2 (90-256)||(41464926-41465089)
chr2 (82-228)||(42263832-42263975)
chr2 (90-259)||(45093173-45093335)
chr2 (96-259)||(3810293-3810453)
chr2 (102-252)||(25414934-25415081)
chr2 (84-259)||(28429284-28429453)
chr2 (99-259)||(14941011-14941169)
chr2 (114-259)||(19898952-19899094)
chr2 (89-226)||(29689277-29689408)
chr2 (87-211)||(35676349-35676470)
chr2 (98-236)||(35323522-35323657)
chr2 (84-224)||(2752692-2752829)
chr2 (84-187)||(28716435-28716535)
chr2 (165-259)||(28716341-28716435)
chr2 (85-193)||(23454350-23454456)
chr2 (84-229)||(16058426-16058569)
chr2 (84-244)||(36690860-36691016)
chr2 (122-259)||(40126524-40126658)
[»] chr4 (16 HSPs)
chr4 (84-255)||(24683079-24683247)
chr4 (84-259)||(18375415-18375586)
chr4 (84-259)||(41633220-41633391)
chr4 (84-255)||(26179238-26179406)
chr4 (139-259)||(54358167-54358287)
chr4 (95-259)||(37674024-37674185)
chr4 (84-227)||(47281588-47281732)
chr4 (84-259)||(17847566-17847733)
chr4 (137-259)||(4512187-4512309)
chr4 (143-259)||(23348137-23348256)
chr4 (160-259)||(41878592-41878691)
chr4 (137-259)||(54021266-54021391)
chr4 (120-259)||(47838967-47839102)
chr4 (84-169)||(41878324-41878406)
chr4 (84-129)||(4098532-4098577)
chr4 (199-259)||(41497915-41497977)
[»] chr7 (9 HSPs)
chr7 (84-255)||(23991978-23992146)
chr7 (80-259)||(27425777-27425953)
chr7 (90-227)||(22326867-22327001)
chr7 (84-231)||(17611845-17611989)
chr7 (144-256)||(42195437-42195549)
chr7 (96-249)||(8307540-8307687)
chr7 (146-194)||(41405803-41405851)
chr7 (143-230)||(25686424-25686514)
chr7 (84-135)||(19479444-19479495)
[»] scaffold0002 (1 HSPs)
scaffold0002 (82-228)||(492667-492810)
[»] chr6 (8 HSPs)
chr6 (90-255)||(7646802-7646964)
chr6 (85-259)||(25935512-25935683)
chr6 (143-257)||(29487541-29487655)
chr6 (114-220)||(12607123-12607226)
chr6 (183-236)||(28898429-28898482)
chr6 (84-163)||(17366853-17366929)
chr6 (137-210)||(29637008-29637081)
chr6 (90-138)||(28898504-28898552)
[»] chr8 (16 HSPs)
chr8 (84-259)||(41322532-41322704)
chr8 (150-259)||(15561938-15562047)
chr8 (90-255)||(29314008-29314170)
chr8 (103-256)||(36473076-36473226)
chr8 (91-244)||(39112658-39112808)
chr8 (84-236)||(4851736-4851885)
chr8 (100-256)||(11653738-11653894)
chr8 (85-227)||(34392112-34392251)
chr8 (114-244)||(2001681-2001807)
chr8 (88-231)||(1005596-1005736)
chr8 (182-259)||(33888946-33889023)
chr8 (84-220)||(8551492-8551625)
chr8 (122-224)||(11643324-11643423)
chr8 (137-206)||(4794174-4794243)
chr8 (118-236)||(5548972-5549087)
chr8 (143-219)||(37919603-37919679)
[»] scaffold0132 (2 HSPs)
scaffold0132 (90-191)||(545-642)
scaffold0132 (90-191)||(8505-8602)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 383 - 636
Target Start/End: Complemental strand, 31032434 - 31032180
Alignment:
Q  383 tttgatttccaaagtcgtaagtcctcaaaagctggcaaattttcgacctatttctttagttggcagcttatataaaattttatctaaggtttttgttaat 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  31032434 tttgatttccaaagtcgtaagtcctcaaaagctggcaaattttcgacctatttctttggttggctgcttatataaaattttatctaaggttcttgttaat 31032335  T
Q  483 aggctaaggaagatggttggtaaggttgtgtcagaatctcaatcgacttttgttcaat-aaannnnnnnnggatgatattttgatagccaacgaattagt 581  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||         |||||||||||||||||||||| |||||||    
T  31032334 aggctaaggaaggtggttggtaaggttgtgtcagaatctcagtcgacttttgttcaatgaatttttttttggatgatattttgatagccaacaaattagt 31032235  T
Q  582 agatgatgcgcgtaataataagacaccatgtctgtattttgatagccaacggggg 636  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  31032234 agatgatgcgcgtaataataagacacagtgtctgtattttgatagccaacggggg 31032180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 79 - 383
Target Start/End: Complemental strand, 31032898 - 31032587
Alignment:
Q  79 ttaaacaatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggagg 178  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    ||||||||||||||||||||||||| ||||||||||    
T  31032898 ttaagcaatgttatatctctagaaaaatatcatcaagaattcttcaagaataaagatcagt---caatcacaatgcactatttgccacagttcaaggagg 31032802  T
Q  179 tgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgctannnnnnnnagaaaaatagc 278  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| |    
T  31032801 tgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgtcaactgtatcttgaaaaattcttgatgcta-tttttctagaaaaataac 31032703  T
Q  279 attttcctattggttttatcaaagttttttgggatttgttgataattga-------------tttgttgaattctatcacaacggtaagctcactaaagg 365  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||             |||||||||||||||||||||  |||||||||||||||    
T  31032702 attttcctattggttttatcaaagttttttgggatttgttgaaaattgatttgttgaatttctttgttgaattctatcacaac--taagctcactaaagg 31032605  T
Q  366 tttacataatacttttat 383  Q
    ||||||||||||||||||    
T  31032604 tttacataatacttttat 31032587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 84 - 259
Target Start/End: Complemental strand, 29095718 - 29095546
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  29095718 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcagc---caatcacaatgcactatttgccacaattcaaggaggtgtgg 29095622  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||||||||||| |||||||||  | ||||||||||||||||||| ||||| | ||||||| | || |||||||||    
T  29095621 ctgaaaaataggaagtgaacaaagatatcatgcaattaaaacttggcaactatgtcttgaaaattttttgatgcta 29095546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 34475902 - 34476070
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||   ||||||||||||||||||| |||| ||||||||||||||||||    
T  34475902 caatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagca---gccaatcacaatgcactatctgccccaattcaaggaggtgtgg 34475998  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 255  Q
    |||||||||||| ||||||||| | ||||||||||||||||||||||| || | ||||||| ||||||||||    
T  34475999 ctgaaaaataggaagtgaacaaatcaatcatgcaattaaaacttgtcagctttgtcttgaaaaattcttgat 34476070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 85 - 259
Target Start/End: Original strand, 1270175 - 1270346
Alignment:
Q  85 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 184  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||||||||| |   ||||| |||||||||||||||||||||||||| |||||||||    
T  1270175 aatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcaac---caatctcaatgcactatttgccacaattcaagaaggtgtggc 1270271  T
Q  185 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||||||||||| |||||| || |||||| ||||||||||||||||||||||| ||||||| |||| |||||||||    
T  1270272 tgaaaaataggaagtgaataaataaatcgtgcaattaaaacttgtcaactgtgtcttgaaaaatttttgatgcta 1270346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 84 - 259
Target Start/End: Original strand, 20808950 - 20809122
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||||||||||||    ||||||||||||| ||||||||||||||||||||| |||||    
T  20808950 caatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagt---caatcacaatgcattatttgccacaattcaaggagatgtgg 20809046  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||||||| |||| ||||||| | |||| |||| |||||||||||| || | |||||||||| ||||||||||||||    
T  20809047 ctgaaaactaggaagtgaacgaataaaccatgtaattaaaacttgccacccgtatcttgaaaaattcttgatgcta 20809122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 85 - 259
Target Start/End: Complemental strand, 9098761 - 9098593
Alignment:
Q  85 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 184  Q
    |||| |||||||||||||||||| |||| ||||||||| ||||||||||||||||   ||||||||||||||||| |||||   |||||| |||||||||    
T  9098761 aatgatatatctctagaaaaataacatcaagaattctttaagaataaagagcagc---caatcacaatgcactatctgcca---ttcaagaaggtgtggc 9098668  T
Q  185 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||| |||| | ||||||||| ||||||||||||||||||||||||| |||| | ||||| ||||||||||||||    
T  9098667 tgaataatacgaagtgaacaaataaatcatgcaattaaaacttgtcagctgtgttttgaaaaattcttgatgcta 9098593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 24135765 - 24135893
Alignment:
Q  91 atatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaa 190  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||||||||   |||||||||||||  |||||||||||||||||||||||||||||||||    
T  24135765 atatctcaagaaaaataacatcaagaattcttcaagaataaagagcagc---caatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaa 24135859  T
Q  191 atagggagtgaacaattaaatcatgcaattaaaa 224  Q
    ||||| ||||||||| ||||||||||||||||||    
T  24135860 ataggaagtgaacaaataaatcatgcaattaaaa 24135893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 84 - 259
Target Start/End: Original strand, 16254858 - 16255029
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    |||| |||||||| | |||||||| |||  ||||||||||||||||||||| ||||   ||||||||||||||||||||||| |||| ||||||||||||    
T  16254858 caatattatatctttggaaaaataacata-agaattcttcaagaataaagatcagc---caatcacaatgcactatttgccataatttaaggaggtgtgg 16254953  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||||| |||||| ||||||||| |||||||| ||||||||  ||||||  ||| | ||||| ||||||||||||||    
T  16254954 ctgaataataggaagtgaacaaataaatcatacaattaaattttgtcagttgtgtattgaaaaattcttgatgcta 16255029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 121 - 259
Target Start/End: Original strand, 47550831 - 47550966
Alignment:
Q  121 ttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaatt 220  Q
    ||||||||||||||||||||   ||| ||||||||||||||||||||||| ||||||||||| || ||||||||| | ||||||  ||||||||||||||    
T  47550831 ttcaagaataaagagcagca---aattacaatgcactatttgccacaatttaaggaggtgtgactaaaaaataggaaatgaacatataaatcatgcaatt 47550927  T
Q  221 aaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||||||| || |||| ||||||| ||||||||||||||    
T  47550928 aaaacttgccagctgtttcttgaaaaattcttgatgcta 47550966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 2958832 - 2958753
Alignment:
Q  142 ccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaatta 221  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2958832 ccaatcacaatgcactatttgccaaaattcaaggaggtgtggctgaaaaatagggagtgaacaaataaatcatgcaatta 2958753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 34807939 - 34808080
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    |||| |||||||||| |||||||| |||| |||||||||||| ||||||||||||    ||||||||||| |||||||  || |||| ||||||||||||    
T  34807939 caattttatatctctcgaaaaataacatcaagaattcttcaaaaataaagagcagt---caatcacaatgtactatttatcataatttaaggaggtgtgg 34808035  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttg 228  Q
    |||||||||| | |||||| || ||||||||||||||||||||||    
T  34808036 ctgaaaaatatgaagtgaataaataaatcatgcaattaaaacttg 34808080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 42480124 - 42480265
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    |||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||    |||| |||||| | ||||| ||||||||||| |||||||||    
T  42480124 caatgttatatctctacaaaaataacatcaagaattcttcaagaataaatagcagt---caattacaatgtattatttaccacaattcaatgaggtgtgg 42480220  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttg 228  Q
    |||||||||||  | |||| || ||||| ||||||||||||||||    
T  42480221 ctgaaaaatagaaaatgaataaataaattatgcaattaaaacttg 42480265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 85 - 259
Target Start/End: Original strand, 45010204 - 45010374
Alignment:
Q  85 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 184  Q
    |||| |||||||||| ||| ||| |||| ||||||||| |||||||||||||| |   |||  | |||||| |||||| ||||||||| | |||||||||    
T  45010204 aatgctatatctctaaaaagataacatcaagaattctttaagaataaagagcatc---caaatataatgcattatttgtcacaattca-gaaggtgtggc 45010299  T
Q  185 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||||||||| | ||||||||| |||||||||||||||||| ||||||  ||| | ||||| ||||||| ||||||    
T  45010300 tgaaaaataagaagtgaacaaataaatcatgcaattaaaatttgtcagatgtgttttgaaaaattctttatgcta 45010374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 137 - 255
Target Start/End: Complemental strand, 44714954 - 44714836
Alignment:
Q  137 agcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgt 236  Q
    ||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||||   | | || || |||||||| ||||||||||||| ||||| |    
T  44714954 agcagtcaatcacaatgcattatttgccacaattcaacgagatgtggctgaaaaataaaaaataaaaaaataaatcatacaattaaaacttgccaactat 44714855  T
Q  237 atcttgaagaattcttgat 255  Q
    |||||||| ||||||||||    
T  44714854 atcttgaaaaattcttgat 44714836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 4194769 - 4194887
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||   | ||| ||||||||||  ||||||| ||| ||||||| ||| | ||     
T  4194769 caatgctatatctctagaaaaataacatcaagaattcttcaagaataaag---aacagtcaatcacaatatactatttaccataattcaaagagatatga 4194865  T
Q  184 ctgaaaaatagggagtgaacaa 205  Q
    |||||||||||| |||||||||    
T  4194866 ctgaaaaataggaagtgaacaa 4194887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 41646587 - 41646660
Alignment:
Q  92 tatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaat 169  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  41646587 tatctctagaaaaataacatc-agaattcttcaagaataaagagcagt---caatcacaatgcactatttgccacaat 41646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 4624438 - 4624489
Alignment:
Q  177 ggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttg 228  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  4624438 ggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttg 4624489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 41647356 - 41647402
Alignment:
Q  213 atgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  41647356 atgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgcta 41647402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 27143698 - 27143605
Alignment:
Q  143 caatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgt 236  Q
    ||||||||||| | ||||||| |||||| || ||||||||  ||||||||||| ||| ||||| || || || |||| || ||||| |||||||    
T  27143698 caatcacaatgtattatttgctacaatttaaagaggtgtgattgaaaaataggaagtaaacaaatacataatacaataaacacttgccaactgt 27143605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 7e-60; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 84 - 259
Target Start/End: Original strand, 32891177 - 32891349
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||||    
T  32891177 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaaaagca---gccaatcacaatgcactatttgccacaattcaaggaggtgtgg 32891273  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    || ||| ||||| ||||||||| |||||||||||||||||| ||||||||||| ||||||| |||| |||||||||    
T  32891274 ctaaaagataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattgttgatgcta 32891349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 85 - 259
Target Start/End: Complemental strand, 4392040 - 4391869
Alignment:
Q  85 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 184  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||   |||| |||||||||| ||||||||||||||||||| ||||||    
T  4392040 aatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcagc---caattacaatgcactgtttgccacaattcaaggagctgtggc 4391944  T
Q  185 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||| || |||| ||||||| ||||||||||||||    
T  4391943 tgaaaaataggaagtgaacaaataaattatgcaattaaaacttgccagctgtgtcttgaaaaattcttgatgcta 4391869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 85 - 259
Target Start/End: Complemental strand, 37094106 - 37093935
Alignment:
Q  85 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 184  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||||||||||    |||||||| || ||||||||| |||||||||||||||||| |    
T  37094106 aatgttatatctctagaaaaataacatcaacaattcttcaagaataaagagcagt---caatcacattgtactatttgcaacaattcaaggaggtgtgac 37094010  T
Q  185 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  37094009 tgaaaaataggaagtgaacaaataaattatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgcta 37093935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 82 - 259
Target Start/End: Original strand, 8692509 - 8692683
Alignment:
Q  82 aacaatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgt 181  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||| |||| |   |||||| |||| |||||||||||||||||||||| ||||    
T  8692509 aacaatgttatatctctagaaaaataacatcaagaattcttcaagaataaatagcatc---caatcataatgtactatttgccacaattcaaggaagtgt 8692605  T
Q  182 ggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||| |||||||||  |||||| || |||||||||||||||||| |||||| |||| |||||||  |||||||||||||    
T  8692606 ggcagaaaaatagaaagtgaataaataaatcatgcaattaaaatttgtcagctgtgtcttgaaagattcttgatgcta 8692683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 3456786 - 3456898
Alignment:
Q  115 gaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcat 214  Q
    ||||||||||||||||||||||||    || ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  3456786 gaattcttcaagaataaagagcagt---cactcacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataggaagtgaacaaataaatcat 3456882  T
Q  215 gcaattaaaacttgtc 230  Q
    ||||||||||||||||    
T  3456883 gcaattaaaacttgtc 3456898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 84 - 227
Target Start/End: Complemental strand, 11739415 - 11739275
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||     ||||| |||||||| |||||||||||||||||||||||||    
T  11739415 caatgttatatctttagaaaaataacatcaagaattcttcaagaataaaaagcaggt---aatcataatgcactgtttgccacaattcaaggaggtgtgg 11739319  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaactt 227  Q
    ||||||||||||  |||||||| ||||| |||||||||||||||    
T  11739318 ctgaaaaataggaggtgaacaaataaattatgcaattaaaactt 11739275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 84 - 259
Target Start/End: Original strand, 34286597 - 34286768
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    |||| ||||||||||| ||||||| |||| | |||| ||||||||||||    ||||||||||||| |||||||||||||||||||| | | ||||||||    
T  34286597 caatattatatctctaaaaaaataacatcaataattattcaagaataaa----agcagccaatcacgatgcactatttgccacaattaatgaaggtgtgg 34286692  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||||||||||| | ||||||| |||||||||||||||||| ||||||  ||| ||||||| || | |||||||||    
T  34286693 ctgaaaaataggaaatgaacaaataaatcatgcaattaaaatttgtcagttgtgtcttgaaaaaattttgatgcta 34286768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 84 - 229
Target Start/End: Original strand, 228026 - 228168
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||||||||||||||| |||| |||||| |||||||||||||| ||     ||||||||||||||||||| ||||||||||||||||||||     
T  228026 caatgatatatctctagaaaaataacatcaagaatttttcaagaataaagaacaat---caatcacaatgcactatttaccacaattcaaggaggtgtga 228122  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgt 229  Q
    ||||||| |||  ||||||||| || ||||||||||||||||||||    
T  228123 ctgaaaagtagaaagtgaacaaatatatcatgcaattaaaacttgt 228168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 84 - 227
Target Start/End: Complemental strand, 38614380 - 38614236
Alignment:
Q  84 caatgttatatctc-tagaaaaatatcatcgagaattcttc---aagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggt 179  Q
    |||||||||||||  |||||||||| |||| ||||||||||   ||||||||||||| ||  ||||||||||||||||| ||||||||||||||| || |    
T  38614380 caatgttatatctaatagaaaaataacatcaagaattcttcttcaagaataaagagc-gc--ccaatcacaatgcactaattgccacaattcaagaagat 38614284  T
Q  180 gtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaactt 227  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||||    
T  38614283 gtggctgaaaaataggaagtaaacaaataaatcatgcaattaaaactt 38614236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 84 - 240
Target Start/End: Complemental strand, 41326644 - 41326491
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||||||||||||||| ||||  ||  |||||||||||||||||||||   |||||||||||  ||||||| ||||||||||||||||||||    
T  41326644 caatgctatatctctagaaaaataacatcacgatctcttcaagaataaagagcagc---caatcacaatgtgctatttgacacaattcaaggaggtgtgg 41326548  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatct 240  Q
    |||||||||||| ||| ||||| || |  ||||||| || ||||| |||||||||||    
T  41326547 ctgaaaaataggaagtaaacaaatacacgatgcaataaacacttgccaactgtatct 41326491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 29223474 - 29223610
Alignment:
Q  90 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 189  Q
    ||||||| ||||||||||  ||| |||||||||||| |||||     ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  29223474 tatatctttagaaaaataatatcaagaattcttcaa-aataag----agcagtcaaccacaatgcactatttgccacaattcaaggaggtgtgactgaaa 29223568  T
Q  190 aatagggagtgaacaattaaatcatgcaattaaaacttgtca 231  Q
    |||| | |||| |||| |||||||||||||||||||||||||    
T  29223569 aataagaagtgtacaaataaatcatgcaattaaaacttgtca 29223610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 40925912 - 40926010
Alignment:
Q  161 tgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||  ||| ||||||| ||||||||||||||    
T  40925912 tgccacaattcaaagaggtgtggctgaaaaataggaagtgaacaaataaatcatacaattaaaacttgtcagatgtgtcttgaaaaattcttgatgcta 40926010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 90 - 257
Target Start/End: Original strand, 28434210 - 28434374
Alignment:
Q  90 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 189  Q
    |||||||||||||||||| ||| |||||||||| || |||||||||||||   |||| |||||||||||||| |||||||| ||| || |||| ||| ||    
T  28434210 tatatctctagaaaaataacattgagaattctttaaaaataaagagcagc---caattacaatgcactatttaccacaatttaagaagatgtgactgtaa 28434306  T
Q  190 aatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgc 257  Q
    |||||  | |||| || |||||||||||||||||||| |  ||||||||||  || ||||||||||||    
T  28434307 aatagaaaatgaataaataaatcatgcaattaaaactcgctaactgtatctaaaaaaattcttgatgc 28434374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 6614366 - 6614293
Alignment:
Q  163 ccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgt 236  Q
    |||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  6614366 ccacaattcaaggaggtgtgcctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgtcgactgt 6614293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 35672504 - 35672352
Alignment:
Q  85 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 184  Q
    |||||||||| |||||||||||| |||  |||||| ||||||||||||||   |||| |||||||||||||||||||  | ||||| |||||  ||| |     
T  35672504 aatgttatatttctagaaaaataacattaagaatttttcaagaataaaga---gcagtcaatcacaatgcactatttatcgcaatttaaggaaatgttg- 35672409  T
Q  185 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatctt 241  Q
    | || |||||| ||||||||| |||||||||||||||||| || |||||||| ||||    
T  35672408 taaacaataggaagtgaacaaataaatcatgcaattaaaatttatcaactgtgtctt 35672352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 5481414 - 5481527
Alignment:
Q  146 tcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaag 245  Q
    |||||||||| ||||||||||||||||  ||| |||||||||||||||   ||||||||| ||||||||||| |||||| ||  ||||||| |||| ||     
T  5481414 tcacaatgcattatttgccacaattcatagagatgtggctgaaaaataaaaagtgaacaaataaatcatgcagttaaaatttaccaactgtgtcttaaaa 5481513  T
Q  246 aattcttgatgcta 259  Q
    ||||||||||||||    
T  5481514 aattcttgatgcta 5481527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 16517078 - 16516960
Alignment:
Q  118 ttcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgca 217  Q
    ||||| |||||||||||||||    |||||| ||| ||||  |||| ||||| || |||| ||| |||||| ||||| |||||||||| ||||||||| |    
T  16517078 ttctttaagaataaagagcagt---caatcataattcactgcttgcaacaatacacggagatgttgctgaataatagagagtgaacaaataaatcatgaa 16516982  T
Q  218 attaaaacttgtcaactgtatc 239  Q
    ||||||||||| || |||||||    
T  16516981 attaaaacttgccagctgtatc 16516960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 31644658 - 31644769
Alignment:
Q  101 aaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtg 200  Q
    ||||||| |||| | ||||||||||||||||||   ||||||||||||||||||||||||| ||            | ||||| ||||||||||| ||||    
T  31644658 aaaaataacatcaataattcttcaagaataaag---agcagccaatcacaatgcactatttacc------------gatgtggttgaaaaataggaagtg 31644742  T
Q  201 aacaattaaatcatgcaattaaaactt 227  Q
    ||||| |||| ||||||||||||||||    
T  31644743 aacaaataaaccatgcaattaaaactt 31644769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 43141523 - 43141563
Alignment:
Q  85 aatgttatatctctagaaaaatatcatcgagaattcttcaa 125  Q
    |||||||| |||||||||||||| |||| ||||||||||||    
T  43141523 aatgttatttctctagaaaaatagcatcaagaattcttcaa 43141563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 7e-60; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 84 - 259
Target Start/End: Complemental strand, 38176585 - 38176413
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||| |||||||||||||||| ||||||||||||||||||    
T  38176585 caatgttatatctctagaaaaatatcatcaagaattcttcaagaataaagagcagc---caatcgcaatgcactatttgcctcaattcaaggaggtgtgg 38176489  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||||||||| | ||||||||| |||| ||||||||||||||||| ||||||| ||||||| ||||||| ||||||    
T  38176488 ctgaaaaatatgaagtgaacaaataaaacatgcaattaaaacttgccaactgtgtcttgaaaaattcttaatgcta 38176413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 84 - 259
Target Start/End: Original strand, 45166229 - 45166401
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||| ||||    
T  45166229 caatgttatatctctagaaaaataacatcaagaattcttcaataataaagagca---gccaatcacaatgcactatttgccacaattcaaggaggcgtgg 45166325  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||| ||||||  ||||||| ||||||||||||||    
T  45166326 ctgaaaaatagggagtggacaaataaatcatgcaattaaaatttgccaactgcgtcttgaaaaattcttgatgcta 45166401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 84 - 256
Target Start/End: Complemental strand, 521960 - 521791
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| ||||| |||||| ||||| |||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  521960 caatgctatatatctagataaataacatcaagaattcttcaagaataaagagcagc---caatcacaatgcactatttgccacaattcaaggaggtgtgg 521864  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatg 256  Q
    |||||||||||| ||||||||| |||||||||||||||||||||| ||||||| |||| || |||||||||||    
T  521863 ctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgacaactgtgtcttaaaaaattcttgatg 521791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 87 - 255
Target Start/End: Complemental strand, 1561448 - 1561283
Alignment:
Q  87 tgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctg 186  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||    
T  1561448 tgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaac---caatcacaatgcactatttgccacaattcaaggaggtgtggctg 1561352  T
Q  187 aaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 255  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||| |||| |||  || ||||||||||    
T  1561351 aaaaataggaagtgaacaaataaatcatgcaattgaaacttgtcagctgtgtctgaaaaaattcttgat 1561283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 84 - 258
Target Start/End: Complemental strand, 50613070 - 50612899
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||     
T  50613070 caatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagc---caatcacaatgcactatttgccacaattcaaggaggtgtga 50612974  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgct 258  Q
    ||||||||||   ||||||||| ||||| ||||||||||||||||||| |||| | ||||| |||||||||||||    
T  50612973 ctgaaaaatataaagtgaacaaataaattatgcaattaaaacttgtcagctgtgtattgaaaaattcttgatgct 50612899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 84 - 254
Target Start/End: Original strand, 31788308 - 31788475
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||     
T  31788308 caatgatatatctctagaaaaataacatcaagaattcttcaagaataaagagca---gccaatcacaatgcactatttaccacaattcaaggaggtgtga 31788404  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttga 254  Q
     ||||||||||| ||||||||| |||||| |||| |||||||||||||| ||| ||||||| |||||||||    
T  31788405 ttgaaaaataggaagtgaacaaataaatcttgcagttaaaacttgtcaattgtgtcttgaaaaattcttga 31788475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 84 - 254
Target Start/End: Original strand, 36517517 - 36517684
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| ||||| |||||| ||||| |||| |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||     
T  36517517 caatgctatatatctagacaaataacatcaagaattcttcaagaataaagagcagt---caatcacaatgcactatttgccacaattcaaggaggtgtga 36517613  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttga 254  Q
     | ||||||||| ||||||||| |||||||||||||||||||||| ||||||| | ||||| |||||||||    
T  36517614 ataaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactgtgttttgaaaaattcttga 36517684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 84 - 259
Target Start/End: Complemental strand, 23643175 - 23643003
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||||| |||||||||||||||| |||| ||||||||||||||||||| |  ||    ||||||||||||||||||||||||||||||||||||||||     
T  23643175 caatgttgtatctctagaaaaataacatcaagaattcttcaagaataaatattagt---caatcacaatgcactatttgccacaattcaaggaggtgtga 23643079  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    || ||||||||| ||||||||| ||||| ||| |||||||| |||||| |||| ||||||| ||||||||||||||    
T  23643078 ctaaaaaataggaagtgaacaaataaattatggaattaaaatttgtcagctgtgtcttgaaaaattcttgatgcta 23643003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 82 - 259
Target Start/End: Original strand, 39145252 - 39145426
Alignment:
Q  82 aacaatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgt 181  Q
    ||||||| ||||||||||||||||||  ||| ||||||||| ||||||||| ||||||   |||| |||||||||||||||| ||||||||| ||||| |    
T  39145252 aacaatgctatatctctagaaaaataatatcaagaattctttaagaataaaaagcagc---caattacaatgcactatttgctacaattcaatgaggtat 39145348  T
Q  182 ggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    | |||||||||||| | |||||||  ||||||| ||||||||||||| ||||||| ||||||  ||||||||||||||    
T  39145349 gactgaaaaataggaaatgaacaaagaaatcatacaattaaaacttgacaactgtgtcttgacaaattcttgatgcta 39145426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 91 - 259
Target Start/End: Original strand, 20912177 - 20912342
Alignment:
Q  91 atatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaa 190  Q
    |||||| || ||||||| |||| |||||||||||||||||||||||||    |||| ||||||||||||||| || |||| ||||||||||| |||||||    
T  20912177 atatctttaaaaaaataacatcaagaattcttcaagaataaagagcagt---caataacaatgcactatttgtcataatttaaggaggtgtgactgaaaa 20912273  T
Q  191 atagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| || | |||| || ||||||||||||||    
T  20912274 ataggaagtgaacaaataaatcatgcaattaaaacttatcagctatgtctttaaaaattcttgatgcta 20912342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 84 - 224
Target Start/End: Complemental strand, 34624671 - 34624535
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||||||||||||||| |||  ||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||  |||| ||||||    
T  34624671 caatgctatatctctagaaaaataacata-agaattcttcaagaataaagagcagc---caatcacaatgcactatttaccacaatttgaggaagtgtgg 34624576  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaa 224  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  34624575 ctgaaaaataggaagtgaacaaataaatcatgcaattaaaa 34624535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 85 - 257
Target Start/End: Original strand, 52546746 - 52546915
Alignment:
Q  85 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 184  Q
    |||| ||||||| |||||||||| |||| | ||||||||||||||||||||||   |||||||||||||  ||||||| |||||||||| ||||||||      
T  52546746 aatgatatatctttagaaaaataacatcaaaaattcttcaagaataaagagca---gccaatcacaatgtgctatttgtcacaattcaatgaggtgtgag 52546842  T
Q  185 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgc 257  Q
    ||||||||||| | ||||||| ||||| ||||||||||||||||| |  ||| ||||| | ||||||||||||    
T  52546843 tgaaaaataggaaatgaacaaataaattatgcaattaaaacttgtaaggtgtgtcttggaaaattcttgatgc 52546915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 85 - 234
Target Start/End: Complemental strand, 51297219 - 51297074
Alignment:
Q  85 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 184  Q
    ||||||||||||||||||||||| |||| ||| | ||||||| ||||||| ||||   ||| |||||||||||||||||||||||||||  |||| || |    
T  51297219 aatgttatatctctagaaaaataacatcaagagt-cttcaagcataaagaacagc---caaccacaatgcactatttgccacaattcaaaaaggtatgac 51297124  T
Q  185 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaact 234  Q
    ||||||||||  ||||||||| |||||||||||||||||| || ||||||    
T  51297123 tgaaaaatagaaagtgaacaaataaatcatgcaattaaaatttatcaact 51297074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 118 - 228
Target Start/End: Original strand, 9496567 - 9496674
Alignment:
Q  118 ttcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgca 217  Q
    |||||||||||||||||| |||   |||||||||| |||| ||||||||||| ||  | ||||| ||||||||||||||||||||||| |||||||||||    
T  9496567 ttcttcaagaataaagagtagc---caatcacaattcactgtttgccacaatacacagtggtgttgctgaaaaatagggagtgaacaaataaatcatgca 9496663  T
Q  218 attaaaacttg 228  Q
     ||||| ||||    
T  9496664 gttaaagcttg 9496674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 22650514 - 22650450
Alignment:
Q  164 cacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttg 228  Q
    ||||||| ||||||||||||||||||| ||   ||||||||| ||||||||||||||||||||||    
T  22650514 cacaatttaaggaggtgtggctgaaaagtaaaaagtgaacaaataaatcatgcaattaaaacttg 22650450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 544643 - 544687
Alignment:
Q  90 tatatctctagaaaaatatcatcgagaattcttcaagaataaaga 134  Q
    |||||||||||||||||| || | |||||||||||||||||||||    
T  544643 tatatctctagaaaaataacaccaagaattcttcaagaataaaga 544687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 43203251 - 43203318
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgc 154  Q
    ||||| ||||| |||| ||||||| |||| |||||||||||| |||||||   ||||||||||||||||||    
T  43203251 caatgctatatttctaaaaaaataacatcaagaattcttcaaaaataaag---agcagccaatcacaatgc 43203318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 514
Target Start/End: Complemental strand, 10755867 - 10755806
Alignment:
Q  453 tataaaattttatctaaggtttttgttaataggctaaggaagatggttggtaaggttgtgtc 514  Q
    ||||||||||||||||| ||||| | |||| |||| || ||| ||||||||||||| |||||    
T  10755867 tataaaattttatctaaagttttggctaatcggcttagaaaggtggttggtaaggtggtgtc 10755806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 29011379 - 29011343
Alignment:
Q  143 caatcacaatgcactatttgccacaattcaaggaggt 179  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  29011379 caatcacaatgtactatttaccacaattcaaggaggt 29011343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 38169389 - 38169328
Alignment:
Q  143 caatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaat 206  Q
    |||||||||| ||||  ||| |||||| |||||||||||| || ||||||||| ||||||||||    
T  38169389 caatcacaatccact--ttgtcacaatacaaggaggtgtgactaaaaaataggaagtgaacaat 38169328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 84 - 259
Target Start/End: Original strand, 13685996 - 13686168
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||||||||||||||| |||| |||||| |||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||    
T  13685996 caatgctatatctctagaaaaataacatcaagaatttttcaagaataaagagca---gccaatcacaatgcactacttgccacaattcaaggaggtgtgg 13686092  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||||||||||| ||||||||| |||||||||||||||||||||| ||| ||| |||| || ||||||||||||||    
T  13686093 ctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaattgtgtcttaaaaaattcttgatgcta 13686168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 90 - 256
Target Start/End: Complemental strand, 41465089 - 41464926
Alignment:
Q  90 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 189  Q
    |||||||||||||||||| |||| |||||||||||||||||||| ||||| |   |||||||||||||||||||| |||||||||||||||||| |||||    
T  41465089 tatatctctagaaaaataacatcaagaattcttcaagaataaagtgcagcgg---atcacaatgcactatttgccgcaattcaaggaggtgtggttgaaa 41464993  T
Q  190 aatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatg 256  Q
    |||||  ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  41464992 aatagaaagtgaacaaataaatcatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatg 41464926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 42263832 - 42263975
Alignment:
Q  82 aacaatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgt 181  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||   |||||||||||||||| ||||| ||||||||||||||||||    
T  42263832 aacaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagca---gccaatcacaatgcacaatttgtcacaattcaaggaggtgt 42263928  T
Q  182 ggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttg 228  Q
    |||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  42263929 ggctgaaaaataggaaatgaacaaataaattatgcaattaaaacttg 42263975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 45093335 - 45093173
Alignment:
Q  90 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 189  Q
    |||||||||||||||||| |||| | ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| || ||||||    
T  45093335 tatatctctagaaaaataacatcaataattcttcaagaataaagagca-------atcacaatgcactatttgccacaattcaaggaggtatgactgaaa 45093243  T
Q  190 aatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||||| ||| |||||||||||||||||||||||| ||  |||||||||||| || ||||||||||||||    
T  45093242 aataggaagtaaacaattaaatcatgcaattaaaatttcccaactgtatcttaaaaaattcttgatgcta 45093173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 96 - 259
Target Start/End: Complemental strand, 3810453 - 3810293
Alignment:
Q  96 tctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagg 195  Q
    |||||||||||| |||  | |||||||||||||||||||| |||   |||| ||||||||||||||||||||||||||||||||||| |||||||||| |    
T  3810453 tctagaaaaataacattaataattcttcaagaataaagagtagc---caattacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataag 3810357  T
Q  196 gagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
     ||||||||| |||||||||||||||||||||| || |||| ||||||| | ||||||||||||    
T  3810356 aagtgaacaaataaatcatgcaattaaaacttgccagctgtgtcttgaaaatttcttgatgcta 3810293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 102 - 252
Target Start/End: Original strand, 25414934 - 25415081
Alignment:
Q  102 aaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtga 201  Q
    |||||| |||| ||||||||||||||||||||| |||    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||  |||||    
T  25414934 aaaataacatcaagaattcttcaagaataaagaacagt---caatcacaatgcactatttgccacaattcaaggaggtatggctgaaaaaaagaaagtga 25415030  T
Q  202 acaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattctt 252  Q
    |||| ||||||||||||||||||||| ||| |||| ||||||| |||||||    
T  25415031 acaaataaatcatgcaattaaaacttatcagctgtgtcttgaaaaattctt 25415081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 84 - 259
Target Start/End: Original strand, 28429284 - 28429453
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| ||||||| ||||||||||  ||| ||||||||||||||||||||||||||   ||| ||||||||| ||||||||| |||| |||||||||||     
T  28429284 caatgctatatctttagaaaaataatatcaagaattcttcaagaataaagagcagc---caaacacaatgcattatttgccataatttaaggaggtgtga 28429380  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||||||||| | ||||||||| |||||||||||||||||||||||||   || || |||| ||||||||||||||    
T  28429381 ctgaaaaataagaagtgaacaaataaatcatgcaattaaaacttgtca---gtgtcatgaaaaattcttgatgcta 28429453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 99 - 259
Target Start/End: Complemental strand, 14941169 - 14941011
Alignment:
Q  99 agaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggct-gaaaaataggga 197  Q
    ||||||||| |||| | |||||||||||||||||||||||    ||||||||||||||||||||||||||||||| |||||||| || |||||||| | |    
T  14941169 agaaaaataacatcaataattcttcaagaataaagagcagt---caatcacaatgcactatttgccacaattcaaagaggtgtgactcgaaaaataagaa 14941073  T
Q  198 gtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||||||| ||||||||| |||||||||||| ||  ||| ||||||| ||||||||||||||    
T  14941072 gtgaacaaataaatcatgaaattaaaacttgccagttgtgtcttgaaaaattcttgatgcta 14941011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 114 - 259
Target Start/End: Original strand, 19898952 - 19899094
Alignment:
Q  114 agaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatca 213  Q
    ||||||||||||||||||||||||   ||||||||||||||| |||||| |||||||||||||||| | |||||||| |||| ||||||||| |||||||    
T  19898952 agaattcttcaagaataaagagca---gccaatcacaatgcattatttgtcacaattcaaggaggtattgctgaaaattaggaagtgaacaaataaatca 19899048  T
Q  214 tgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||||||||||||||| ||  ||| ||||||| ||||| ||||||||    
T  19899049 tgcaattaaaacttgccagttgtgtcttgaaaaattcgtgatgcta 19899094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 29689408 - 29689277
Alignment:
Q  89 ttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaa 188  Q
    ||||||||||||||||||| |||| |||||| || ||||||||||||||      |||||||||||||||||||| | ||||||||||||| || |||||    
T  29689408 ttatatctctagaaaaataacatcaagaattttttaagaataaagagca------aatcacaatgcactatttgctataattcaaggaggtttgactgaa 29689315  T
Q  189 aaatagggagtgaacaattaaatcatgcaattaaaact 226  Q
    ||||||| ||||||| | ||||||||||||||||||||    
T  29689314 aaataggaagtgaactaataaatcatgcaattaaaact 29689277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 87 - 211
Target Start/End: Complemental strand, 35676470 - 35676349
Alignment:
Q  87 tgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctg 186  Q
    ||||||||||||| ||||||| |||| ||||||||| |||||||||||||||    ||| |||||||||||||||||||||||||||||||||||| |||    
T  35676470 tgttatatctctaaaaaaataacatcaagaattctttaagaataaagagcagt---caaccacaatgcactatttgccacaattcaaggaggtgtgactg 35676374  T
Q  187 aaaaatagggagtgaacaattaaat 211  Q
    ||||||| | ||||||||| |||||    
T  35676373 aaaaatatgaagtgaacaaataaat 35676349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 35323657 - 35323522
Alignment:
Q  98 tagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaataggga 197  Q
    |||||||||| |||| | ||||||||||||||||||| |||    |||||||||| |||||||||||||||||||| |||||||||||||||||||   |    
T  35323657 tagaaaaataacatcaaaaattcttcaagaataaagaacagt---caatcacaatacactatttgccacaattcaatgaggtgtggctgaaaaataaaaa 35323561  T
Q  198 gtgaacaattaaatcatgcaattaaaacttgtcaactgt 236  Q
     ||||||  ||||||||| ||||||||||||||||||||    
T  35323560 ctgaacatataaatcatgtaattaaaacttgtcaactgt 35323522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 84 - 224
Target Start/End: Complemental strand, 2752829 - 2752692
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| ||||| |||||||||||| |||  ||||||||||||||| ||| ||||||   ||||||||||||||||||||||||||||||||||| | ||     
T  2752829 caatgatatatttctagaaaaataacattaagaattcttcaagaaaaaatagcagc---caatcacaatgcactatttgccacaattcaaggagatctga 2752733  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaa 224  Q
    |||||||||| | |||||| || |||||||| |||||||||    
T  2752732 ctgaaaaataagaagtgaataaataaatcatacaattaaaa 2752692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 28716535 - 28716435
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||||| || ||| |   ||||||||||||||||||||||||||||| |||||||||    
T  28716535 caatgttatatctctagaaaaatgacatcaagaattcttcaagaataaatagtagccg---atcacaatgcactatttgccacaattcaaagaggtgtgg 28716439  T
Q  184 ctga 187  Q
    ||||    
T  28716438 ctga 28716435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 28716435 - 28716341
Alignment:
Q  165 acaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| ||  ||| ||||||| ||||||||||||||    
T  28716435 acaattcaaagaggtgtggctgaaaaataggaagtgaacaaataaataatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgcta 28716341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 23454456 - 23454350
Alignment:
Q  85 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcact-atttgccacaattcaaggaggtgtgg 183  Q
    |||| |||||||||||||||||| |||  | |||||||||||||||||||   |||| ||||||||||||||| ||||| ||||||||||||||||| |     
T  23454456 aatgctatatctctagaaaaataacataaaaaattcttcaagaataaaga---gcagtcaatcacaatgcactaatttgacacaattcaaggaggtgcga 23454360  T
Q  184 ctgaaaaata 193  Q
    ||||||||||    
T  23454359 ctgaaaaata 23454350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 16058569 - 16058426
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggag--gtgt 181  Q
    ||||| |||||||||||||||||| |||  |||||||||||||||||||||| ||    | || | |||| || ||||| ||||||||||||||  ||||    
T  16058569 caatgctatatctctagaaaaataacattaagaattcttcaagaataaagagtagt---ctataataatgaac-atttgtcacaattcaaggagttgtgt 16058474  T
Q  182 ggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgt 229  Q
    |||||||||||| | |||||| || |||||||||||| ||||||||||    
T  16058473 ggctgaaaaatatgaagtgaataaataaatcatgcaaataaaacttgt 16058426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 244
Target Start/End: Complemental strand, 36691016 - 36690860
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    |||||||||||||||| ||| ||| |||| | |||||||||| |||||| | || |   |||| | ||| || |||||||||||||||||||| | ||||    
T  36691016 caatgttatatctctaaaaatataacatcaaaaattcttcaaaaataaaaaacatc---caattataatacagtatttgccacaattcaaggaagcgtgg 36690920  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaa 244  Q
    ||| ||| |||| ||||||||| ||||||| | |||||||| |||||| |||| |||||||    
T  36690919 ctg-aaagtaggaagtgaacaaataaatcaagtaattaaaatttgtcagctgtgtcttgaa 36690860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 259
Target Start/End: Complemental strand, 40126658 - 40126524
Alignment:
Q  122 tcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaatta 221  Q
    |||||||||||||||||    || ||| ||||||||||||  ||||||| ||| || | | | ||||||||||| ||||||||| |||||||| ||||||    
T  40126658 tcaagaataaagagcagt---cattcataatgcactatttatcacaatttaagaagatatagttgaaaaataggaagtgaacaaataaatcatacaatta 40126562  T
Q  222 aaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||| |||| | ||||||||| || |||||| |||||||    
T  40126561 aaatttgtgagctgtatcttaaaaaattctcgatgcta 40126524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 24683079 - 24683247
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| | |||||||     
T  24683079 caatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagca---gccaatcacaatgcactatttgccacaattcaggaaggtgtga 24683175  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 255  Q
    |||||||||||| ||||||||| ||||||||||||||||||||| |||| ||| ||||||| ||||||||||    
T  24683176 ctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttatcaagtgtgtcttgaaaaattcttgat 24683247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 84 - 259
Target Start/End: Complemental strand, 18375586 - 18375415
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||| || |    |||||||||||||||||||||||||||||||||||||||||    
T  18375586 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaagtgcggt---caatcacaatgcactatttgccacaattcaaggaggtgtgg 18375490  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||| |||||||| ||||||||| |||||||||||||||||||||| ||  ||| ||||||| ||||||||||||||    
T  18375489 ctg-aaaataggaagtgaacaaataaatcatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgcta 18375415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 84 - 259
Target Start/End: Original strand, 41633220 - 41633391
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||    
T  41633220 caatgttatatctctagaaaaataacattaagaattcttcaagaataaagagca---gccaatcacaatgcactacttgccacaattcaaggaggtgtgg 41633316  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||||||||||| ||||||||| ||||| ||| |||||||| |||||| || | ||||||| ||||||||||||||    
T  41633317 ctgaaaaataggaagtgaacaaataaat-atgtaattaaaatttgtcagctttgtcttgaaaaattcttgatgcta 41633391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 84 - 255
Target Start/End: Complemental strand, 26179406 - 26179238
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||||||||   |||||||| ||||||||||  ||||||||||||||||||||    
T  26179406 caatgttatatctctagaaaaataacattaagaattcttcaagaataaagagcagc---caatcacagtgcactatttaacacaattcaaggaggtgtgg 26179310  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 255  Q
    |||||||||||| ||||||||| ||||||||  |||| ||||||| || |||| | || || ||||||||||    
T  26179309 ctgaaaaataggaagtgaacaaataaatcatcaaattgaaacttgacagctgtgttttaaaaaattcttgat 26179238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 139 - 259
Target Start/End: Original strand, 54358167 - 54358287
Alignment:
Q  139 cagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtat 238  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| | |    
T  54358167 cagccaatcacaatgcactatttgccacaatttaagggggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactatgt 54358266  T
Q  239 cttgaagaattcttgatgcta 259  Q
    |||||| ||||||||||||||    
T  54358267 cttgaaaaattcttgatgcta 54358287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 95 - 259
Target Start/End: Complemental strand, 37674185 - 37674024
Alignment:
Q  95 ctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatag 194  Q
    ||||||||||||| |||| |||||||||||||| ||||||||||    ||||||||||| ||||||| | ||||||||| |||||||||||||||||||     
T  37674185 ctctagaaaaataacatcaagaattcttcaagactaaagagcagt---caatcacaatgtactatttactacaattcaaagaggtgtggctgaaaaataa 37674089  T
Q  195 ggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
      ||| ||||| |||||||||||||||||||||||||   || ||||||| ||||||||||||||    
T  37674088 aaagttaacaaataaatcatgcaattaaaacttgtcacacgtgtcttgaaaaattcttgatgcta 37674024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 84 - 227
Target Start/End: Complemental strand, 47281732 - 47281588
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaat----tcaaggaggt 179  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||||||||| |  ||   |||||||||||||||||||||||| |    ||||||||||    
T  47281732 caatgttatatgtctagaaaaataacatcaagaattcttcaagaataaagaacgaca---aatcacaatgcactatttgccacattaatttcaaggaggt 47281636  T
Q  180 gtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaactt 227  Q
    |||| ||||||||||| ||||||||| |||||||||||||||||||||    
T  47281635 gtggttgaaaaataggaagtgaacaaataaatcatgcaattaaaactt 47281588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 84 - 259
Target Start/End: Complemental strand, 17847733 - 17847566
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||||||||||||||| |||  | |||||||||||| |||| |||||    |||||| |||||||     |||||||||||||||||||||     
T  17847733 caatgctatatctctagaaaaataacataaaaaattcttcaagattaaaaagcagt---caatcataatgcac-----gccacaattcaaggaggtgtga 17847642  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    | |||||||||  ||||||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  17847641 cagaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgcta 17847566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 137 - 259
Target Start/End: Complemental strand, 4512309 - 4512187
Alignment:
Q  137 agcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgt 236  Q
    ||||| ||||||||||  ||||||||||||||||||||||| |||| |||||||||||| ||| ||||| ||||| |||||||||||||||| || |||     
T  4512309 agcagtcaatcacaatatactatttgccacaattcaaggagatgtgactgaaaaataggaagtaaacaaataaatgatgcaattaaaacttgccacctga 4512210  T
Q  237 atcttgaagaattcttgatgcta 259  Q
     | ||||| ||||||||||||||    
T  4512209 gtattgaaaaattcttgatgcta 4512187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 23348256 - 23348137
Alignment:
Q  143 caatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaat---agggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatc 239  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||||||||   ||| ||||||||| ||||||||||||||||||||||||   ||| ||    
T  23348256 caatcacaatacactatttaccataattcaaggaggtgtggctgaaaaataggaggaagtgaacaaataaatcatgcaattaaaacttgtcggttgtttc 23348157  T
Q  240 ttgaagaattcttgatgcta 259  Q
    ||||| |||| |||||||||    
T  23348156 ttgaaaaattattgatgcta 23348137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 41878592 - 41878691
Alignment:
Q  160 ttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||||||||||||||  |||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||  | | ||||||| ||||||||||||||    
T  41878592 ttgccacaattcaataaggtgtggctgaaaaataggaagtaaacaaataaatcatgcaattaaaacttgtcagttatgtcttgaaaaattcttgatgcta 41878691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 137 - 259
Target Start/End: Complemental strand, 54021391 - 54021266
Alignment:
Q  137 agcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatca---tgcaattaaaacttgtcaac 233  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||  ||| ||||| |||| ||      ||||||||||||||| |    
T  54021391 agcagccaatcacaatgcactatgtgccacaatttaaggaggtgtggttgaaaaatagaaagtaaacaaataaagcaattaaaaattaaaacttgtcagc 54021292  T
Q  234 tgtatcttgaagaattcttgatgcta 259  Q
    | |||||| || ||||||||||||||    
T  54021291 tttatcttaaaaaattcttgatgcta 54021266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 47839102 - 47838967
Alignment:
Q  120 cttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaat 219  Q
    |||||||||||||||||||    ||| ||||||| |||||||||||||||| ||||||||||||| |||||||||  | |||||||  | ||||||||||    
T  47839102 cttcaagaataaagagcagt---caaccacaatgtactatttgccacaatttaaggaggtgtggccgaaaaatagaaaatgaacaaaaacatcatgcaat 47839006  T
Q  220 taaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||| ||   || |||| ||||||| ||||||||||||||    
T  47839005 taaatctcaccagctgtgtcttgaa-aattcttgatgcta 47838967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 41878324 - 41878406
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaat 169  Q
    ||||||| ||||| |||||||||| ||||  |||||||||| ||||||||| ||||   ||||||||||||||||||||| |||||    
T  41878324 caatgttgtatctatagaaaaataacatcatgaattcttcatgaataaagatcagc---caatcacaatgcactatttgctacaat 41878406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 4098577 - 4098532
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaat 129  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||    
T  4098577 caatgttatatctctagaaaaataacatcaagaattcttcaagaat 4098532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 41497977 - 41497915
Alignment:
Q  199 tgaacaattaaatcatgcaattaaaacttgtcaac--tgtatcttgaagaattcttgatgcta 259  Q
    ||||||| ||||||||||||||||||||| |||||  ||| ||||||| |||| |||||||||    
T  41497977 tgaacaaataaatcatgcaattaaaacttatcaactgtgtgtcttgaataatttttgatgcta 41497915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 84 - 255
Target Start/End: Complemental strand, 23992146 - 23991978
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    |||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||    
T  23992146 caatgttatatctctacaaatataacatcaagaattcttcaagaataaagagcagc---ctatcacaatgcactatttgccacaattcaaggaggtgtgg 23992050  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 255  Q
    |||||||||||  |||||||||  | ||||||||||||||||||||||  ||| ||||||| ||||||||||    
T  23992049 ctgaaaaatagaaagtgaacaaaaatatcatgcaattaaaacttgtcagttgtgtcttgaaaaattcttgat 23991978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 80 - 259
Target Start/End: Complemental strand, 27425953 - 27425777
Alignment:
Q  80 taaacaatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggt 179  Q
    ||||||||| ||||||| |||||||||| |||| ||||||||| ||||||||||| |||    ||||||||||||| ||||||||||||||||||||| |    
T  27425953 taaacaatgctatatctttagaaaaataacatcaagaattcttaaagaataaagaacagt---caatcacaatgcattatttgccacaattcaaggagtt 27425857  T
Q  180 gtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||| |||| |||||||||    
T  27425856 gtggttgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattgttgatgcta 27425777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 22326867 - 22327001
Alignment:
Q  90 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 189  Q
    ||||||| |||||||||| |||| ||||||||||||||| ||||||| |    ||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  22326867 tatatctttagaaaaataacatcaagaattcttcaagaagaaagagccgt---caatcacaatgtactatttgccacaattcagggaggtgtgactgaaa 22326963  T
Q  190 aatagggagtgaacaattaaatcatgcaattaaaactt 227  Q
    |||||  ||||||||| |||||||||||||||||||||    
T  22326964 aatagaaagtgaacaaataaatcatgcaattaaaactt 22327001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 84 - 231
Target Start/End: Original strand, 17611845 - 17611989
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||| ||||||||||| |||| ||||||||||||||||||||| || |   |||||| |||| | ||||||||||||||||||||| |||||    
T  17611845 caatgctatatcgctagaaaaataacatcaagaattcttcaagaataaagaacaac---caatcataatgaattatttgccacaattcaaggagatgtgg 17611941  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtca 231  Q
    || ||||||||| |||||| || |||||||| ||||||||||||||||    
T  17611942 ctaaaaaataggaagtgaataaataaatcatacaattaaaacttgtca 17611989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 144 - 256
Target Start/End: Original strand, 42195437 - 42195549
Alignment:
Q  144 aatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttga 243  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| | |  |||||||| |    
T  42195437 aatctcaatgcactatttaccacaattcaaggaggtgtgtctgaaaaataaggagtgaacaaataaatcatgcaattaaaactttttagttgtatcttaa 42195536  T
Q  244 agaattcttgatg 256  Q
    | |||||||||||    
T  42195537 aaaattcttgatg 42195549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 8307540 - 8307687
Alignment:
Q  96 tctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagg 195  Q
    |||||||||||| |||| |||||| || |||||||||||  ||    |||||| ||||||||||| ||||||||||||||   ||||||| |||||||||    
T  8307540 tctagaaaaataacatcaagaattttttaagaataaagacgagt---caatcataatgcactattagccacaattcaagg---tgtggctcaaaaatagg 8307633  T
Q  196 gagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaatt 249  Q
     ||||||||| ||||||||||| |||||| ||| ||  ||| ||||||| ||||    
T  8307634 aagtgaacaaataaatcatgcagttaaaatttgccagttgtgtcttgaaaaatt 8307687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 41405851 - 41405803
Alignment:
Q  146 tcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatag 194  Q
    |||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  41405851 tcacaatgcactatttgccacaatacaaggaggtatggttgaaaaatag 41405803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 25686424 - 25686514
Alignment:
Q  143 caatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaac-aatta--aatcatgcaattaaaacttgtc 230  Q
    |||||| |||| ||||||| |||||||| ||||||||||||||| |||||||| ||| ||| |||||  |||||| |||| ||||||||||    
T  25686424 caatcataatgtactatttaccacaatttaaggaggtgtggctggaaaataggaagtaaacaaattaataatcatacaatcaaaacttgtc 25686514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 19479444 - 19479495
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagag 135  Q
    ||||| |||||||||||||||||| |||| | |||||||||| |||||||||    
T  19479444 caatgctatatctctagaaaaataacatcaaaaattcttcaaaaataaagag 19479495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 492667 - 492810
Alignment:
Q  82 aacaatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgt 181  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||   |||||||||||||||| ||||| ||||||||||||||||||    
T  492667 aacaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagca---gccaatcacaatgcacaatttgtcacaattcaaggaggtgt 492763  T
Q  182 ggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttg 228  Q
    |||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  492764 ggctgaaaaataggaaatgaacaaataaattatgcaattaaaacttg 492810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 90 - 255
Target Start/End: Complemental strand, 7646964 - 7646802
Alignment:
Q  90 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 189  Q
    |||||||||||||||||| |||| ||||||||| || |||||||||||||   |||||||||||||||||||||||||||||||||| ||||| ||||||    
T  7646964 tatatctctagaaaaataacatcaagaattctttaaaaataaagagcagc---caatcacaatgcactatttgccacaattcaaggatgtgtgactgaaa 7646868  T
Q  190 aatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 255  Q
    |||||| | ||||||| |||||||||||||||||||||| ||  ||| ||||||| ||||| ||||    
T  7646867 aataggaaatgaacaaataaatcatgcaattaaaacttgccagatgtgtcttgaaaaattcctgat 7646802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 85 - 259
Target Start/End: Original strand, 25935512 - 25935683
Alignment:
Q  85 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 184  Q
    ||||||||||||||||||||||| |||  |||||| ||||||||||||||||| |    ||||| |||| |||||||| ||||||| |||||||||||||    
T  25935512 aatgttatatctctagaaaaataacattaagaattattcaagaataaagagcatct---aatcataatgtactatttgtcacaatttaaggaggtgtggc 25935608  T
Q  185 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    ||||||||||  ||||||  | ||||||||| |||||||||||| || |||| ||||||| ||||||||||||||    
T  25935609 tgaaaaatagaaagtgaaagaataaatcatgtaattaaaacttgccagctgtgtcttgaaaaattcttgatgcta 25935683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 143 - 257
Target Start/End: Complemental strand, 29487655 - 29487541
Alignment:
Q  143 caatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttg 242  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| || ||||  ||||||| ||| |    
T  29487655 caatcacattgcactatttgccacaattaaatgaggtgtggctgaaaaatagggagtgaacaaataaatcatgcaatcaacacttaccaactgtgtctgg 29487556  T
Q  243 aagaattcttgatgc 257  Q
    || ||||||||||||    
T  29487555 aaaaattcttgatgc 29487541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 12607226 - 12607123
Alignment:
Q  114 agaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatca 213  Q
    |||||||||||||||||||||||||    |||||||| ||||||||||||||||||| ||||||||||| |||||||||||  ||||||||| |||||||    
T  12607226 agaattcttcaagaataaagagcagt---caatcacagtgcactatttgccacaatttaaggaggtgtgactgaaaaatagaaagtgaacaaataaatca 12607130  T
Q  214 tgcaatt 220  Q
    |||||||    
T  12607129 tgcaatt 12607123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 28898482 - 28898429
Alignment:
Q  183 gctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgt 236  Q
    |||| |||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  28898482 gctgtaaaatagggagtgaacaaataaatcatgcaattaaaactttttaactgt 28898429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 17366853 - 17366929
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgc 163  Q
    ||||| |||||||||||||||| | |||  |||||| |||||||||||||   | |||| ||||||| ||||||||||||    
T  17366853 caatgctatatctctagaaaaacaacattaagaatttttcaagaataaag---aacagctaatcacactgcactatttgc 17366929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 29637008 - 29637081
Alignment:
Q  137 agcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaa 210  Q
    ||||| |||||||||   ||||||||||||||| |||||||||   ||||||||||||  ||||||||| ||||    
T  29637008 agcagtcaatcacaactaactatttgccacaatacaaggaggtaaagctgaaaaatagaaagtgaacaaataaa 29637081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 28898552 - 28898504
Alignment:
Q  90 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcag 138  Q
    ||||| |||||||||| | ||||  ||||||||||||||||||||||||    
T  28898552 tatatatctagaaaaagagcatcacgaattcttcaagaataaagagcag 28898504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 4e-43; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 84 - 259
Target Start/End: Original strand, 41322532 - 41322704
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| ||||||| || ||||||| |||| |||||||||||||||||||||||||    ||||||||||||||||||||  | |||||||||||||||||    
T  41322532 caatgctatatctttaaaaaaataacatcaagaattcttcaagaataaagagcagt---caatcacaatgcactatttgtgaaaattcaaggaggtgtgg 41322628  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
      |||||||||| ||| ||||||||||||||||||||||||||||  |||| | ||||||| ||||||||||||||    
T  41322629 tagaaaaataggaagttaacaattaaatcatgcaattaaaacttgctaactatgtcttgaaaaattcttgatgcta 41322704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 15562047 - 15561938
Alignment:
Q  150 aatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaatt 249  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||| ||||    
T  15562047 aatgcattatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaataaatcatacaattaaaacttgccaactgtatcttgaaaaatt 15561948  T
Q  250 cttgatgcta 259  Q
    ||||||||||    
T  15561947 cttgatgcta 15561938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 90 - 255
Target Start/End: Original strand, 29314008 - 29314170
Alignment:
Q  90 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 189  Q
    |||||||||||||||||| |||| |||||| || |||||||||||| ||    |||||||||||||||||||||||||||| ||||||||||| ||||||    
T  29314008 tatatctctagaaaaataacatcaagaattgtttaagaataaagagaagt---caatcacaatgcactatttgccacaatttaaggaggtgtgactgaaa 29314104  T
Q  190 aatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 255  Q
    |||||  |||| |||| ||||| |||||||||||||||  ||||||| ||||||| ||||||||||    
T  29314105 aatagaaagtggacaaataaataatgcaattaaaacttaccaactgtgtcttgaaaaattcttgat 29314170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 36473226 - 36473076
Alignment:
Q  103 aaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaa 202  Q
    ||||| |||| |||||||||||||||||||||||||    |||||||| | ||||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  36473226 aaataacatcaagaattcttcaagaataaagagcagt---caatcacagtacactatttgacacaatttaaggaggtgtggctgaaaaataggaagtgaa 36473130  T
Q  203 caattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatg 256  Q
    ||| |||||||||||||||||||||  ||| ||| ||||||| |||||||||||    
T  36473129 caaataaatcatgcaattaaaacttaccaattgtgtcttgaaaaattcttgatg 36473076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 91 - 244
Target Start/End: Original strand, 39112658 - 39112808
Alignment:
Q  91 atatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaa 190  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||||| |   ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  39112658 atatctctagaaaaataacatcaagaattcttcaaaaataaagagcaac---caatcacaatgcactatttgccataattcaaggaggtgcggctgaaaa 39112754  T
Q  191 atagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaa 244  Q
    ||||  ||||||||| |||||||| ||||||||| ||| ||| ||| |||||||    
T  39112755 atagaaagtgaacaaataaatcatccaattaaaatttgccaattgtgtcttgaa 39112808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 84 - 236
Target Start/End: Original strand, 4851736 - 4851885
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||||||||||||||| |||| |||||| || |||||||||||||||    |||||| |||||||||||| |||||||| ||||| ||||||    
T  4851736 caatgctatatctctagaaaaataacatcaagaattttttaagaataaagagcagt---caatcataatgcactattttccacaatttaaggaagtgtgg 4851832  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgt 236  Q
    |||||||||||| | | ||||| ||||||||||||||||||||||||| ||||    
T  4851833 ctgaaaaataggaaataaacaaataaatcatgcaattaaaacttgtcagctgt 4851885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 100 - 256
Target Start/End: Complemental strand, 11653894 - 11653738
Alignment:
Q  100 gaaaaatatcatcgagaattcttcaagaataaagagcag-cagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggag 198  Q
    |||||||| |||| ||||||||||||||||||||||||| ||  |||||| |||| |||||||||||||||||||||| |||||||| ||||| ||  ||    
T  11653894 gaaaaataacatcaagaattcttcaagaataaagagcagtcaatcaatcataatgtactatttgccacaattcaaggatgtgtggcttaaaaa-agtaag 11653796  T
Q  199 tgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatg 256  Q
    ||||||| ||||||||| ||||||||||||||| | || |||| || |||||||||||    
T  11653795 tgaacaaataaatcatgtaattaaaacttgtcagccgtgtcttaaaaaattcttgatg 11653738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 34392112 - 34392251
Alignment:
Q  85 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 184  Q
    |||| |||||||||| ||||||| |||| |||||| |||||||||||||||||     ||||||||||| |||||||||||||||| ||| |||||||||    
T  34392112 aatgctatatctctaaaaaaataacatcaagaatttttcaagaataaagagcact---caatcacaatgtactatttgccacaatttaagaaggtgtggc 34392208  T
Q  185 tgaaaaatagggagtgaacaattaaatcatgcaattaaaactt 227  Q
    ||||||||    ||||||||| |||||||||||||||||||||    
T  34392209 tgaaaaatgaaaagtgaacaaataaatcatgcaattaaaactt 34392251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 2001681 - 2001807
Alignment:
Q  114 agaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatca 213  Q
    |||||||||||||||||||||||||    |||||| ||| ||| ||||||||||||| ||||||||||||||| |||||||  ||||||||| |||||||    
T  2001681 agaattcttcaagaataaagagcagt---caatca-aatacacgatttgccacaatttaaggaggtgtggctggaaaatagatagtgaacaaataaatca 2001776  T
Q  214 tgcaattaaaacttgtcaactgtatcttgaa 244  Q
    || |||||||||||| || |||| |||||||    
T  2001777 tgtaattaaaacttggcagctgtgtcttgaa 2001807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 1005596 - 1005736
Alignment:
Q  88 gttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctga 187  Q
    ||||||||||||||||||||  ||  | ||||||| |||||||||||| |     |||| | ||||||| ||||| ||||||| || |||||||| ||||    
T  1005596 gttatatctctagaaaaataatattaaaaattcttaaagaataaagagtaat---caattataatgcaccatttgacacaatttaaagaggtgtgactga 1005692  T
Q  188 aaaatagggagtgaacaattaaatcatgcaattaaaacttgtca 231  Q
    |||||||| ||||||||| ||||| |||||||||||||||||||    
T  1005693 aaaataggaagtgaacaaataaattatgcaattaaaacttgtca 1005736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 33888946 - 33889023
Alignment:
Q  182 ggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 259  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||  ||| ||||||| ||||||||||||||    
T  33888946 ggctgaaaaatagggagtgaacaaataaattatgcaattaaaacttgtcagttgtttcttgaaaaattcttgatgcta 33889023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 8551492 - 8551625
Alignment:
Q  84 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 183  Q
    ||||| |||||||||| ||||||| |||  |||||||||| |||||||||| || |   ||||||||||||| | |||||||||||| |||||| |||||    
T  8551492 caatgctatatctctaaaaaaataacattaagaattcttcgagaataaagaacaac---caatcacaatgcattgtttgccacaattaaaggagatgtgg 8551588  T
Q  184 ctgaaaaatagggagtgaacaattaaatcatgcaatt 220  Q
     | ||||||||  | ||||||| ||||||||||||||    
T  8551589 ttaaaaaatagaaaatgaacaaataaatcatgcaatt 8551625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 11643324 - 11643423
Alignment:
Q  122 tcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaatta 221  Q
    |||||||||||||||||    ||||||||||||||||||| |||||||| ||| | |||| | ||||||||| | ||||||||| |||||||| ||||||    
T  11643324 tcaagaataaagagcagt---caatcacaatgcactatttaccacaatttaagaaagtgtagttgaaaaatacgaagtgaacaaataaatcatacaatta 11643420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 4794174 - 4794243
Alignment:
Q  137 agcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaat 206  Q
    |||||||||||||||||||||||||||||||||  | |||||| ||||  ||||||||| ||||||||||    
T  4794174 agcagccaatcacaatgcactatttgccacaatatatggaggtttggccaaaaaataggaagtgaacaat 4794243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 5548972 - 5549087
Alignment:
Q  118 ttcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgca 217  Q
    |||||||||||||||||||||    |||||| ||| || || |||||| ||| || || |||||  ||||| |||||||||||||||| |||||||||||    
T  5548972 ttcttcaagaataaagagcagt---caatcataattcagtacttgccataatacacggtggtgtccctgaacaatagggagtgaacaaataaatcatgca 5549068  T
Q  218 attaaaacttgtcaactgt 236  Q
    |||| | |||| |||||||    
T  5549069 attataccttgacaactgt 5549087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 37919679 - 37919603
Alignment:
Q  143 caatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaat 219  Q
    ||||||||||||| |||||| ||||||| |||||| ||||  ||||||||||  ||||||||| |||||||||||||    
T  37919679 caatcacaatgcattatttgtcacaatttaaggagatgtgagtgaaaaatagtaagtgaacaaataaatcatgcaat 37919603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 545 - 642
Alignment:
Q  90 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 189  Q
    ||||||| || ||||||| |||| ||||||||||||||||||||   ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||    
T  545 tatatctataaaaaaataacatcaagaattcttcaagaataaag---agcagtcaatcacaatgcactatttg-cacaatttaaggaggtgtggctgaaa 640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 8505 - 8602
Alignment:
Q  90 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 189  Q
    ||||||| || ||||||| |||| ||||||||||||||||||||   ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||    
T  8505 tatatctataaaaaaataacatcaagaattcttcaagaataaag---agcagtcaatcacaatgcactatttg-cacaatttaaggaggtgtggctgaaa 8600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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