View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_46 (Length: 287)
Name: NF0589_low_46
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 1088184 - 1087911
Alignment:
| Q |
1 |
tgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaaccactaccatct |
100 |
Q |
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| T |
1088184 |
tgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaaccactaccatct |
1088085 |
T |
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| Q |
101 |
ccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1088084 |
ccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatatttgcatcaacccaagtatgtg |
1087985 |
T |
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| Q |
201 |
atgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccacatctccaatcttcttcacct |
274 |
Q |
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| T |
1087984 |
atgtatctggcaatttcaatccataaaatcttacaaaactatcattcactccacatctccaatcttcgtcacct |
1087911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 1047710 - 1047456
Alignment:
| Q |
1 |
tgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaaccactaccatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
1047710 |
tgtggaagcatccattcgaatatatagatattgttggaatgttaagatctgtttcaagtcaataagatcaccaaaccatatagaacaaccactgccatct |
1047611 |
T |
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| Q |
101 |
ccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtg |
200 |
Q |
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| T |
1047610 |
ccagccacatccaagtttgaataagccatgcaagaacaattttccaagcatttatttttacaattctcaagtgtcatattagcatcaacccaagtatgtg |
1047511 |
T |
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| Q |
201 |
atgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccaca |
255 |
Q |
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| T |
1047510 |
ttgtatctggcaatttcaatccagaaaatgttccaaaaccatcattcacaccaca |
1047456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 1072520 - 1072269
Alignment:
| Q |
1 |
tgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaaccactaccatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
1072520 |
tgtggaagcatccattcgaatatatagatattgttggaatgttaaaatctgtcttaagtctataagatcaccaaaccatatggaacatccactaccatca |
1072421 |
T |
|
| Q |
101 |
ccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtg |
200 |
Q |
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| T |
1072420 |
ct---cacatttaagtttgaataagccatacaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtg |
1072324 |
T |
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| Q |
201 |
atgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccaca |
255 |
Q |
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|||||| ||||||||||||||| ||||| || ||||| ||||||||| ||||| |
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| T |
1072323 |
ttgtatctggcaatttcaatccagaaaatgttctaaaacgatcattcacaccaca |
1072269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 1104737 - 1104483
Alignment:
| Q |
1 |
tgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaaccactaccatct |
100 |
Q |
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|||||||||||||||||||| ||| |||| |||||| | |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
1104737 |
tgtggaagcatccattcgaacataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaaccactaccatct |
1104638 |
T |
|
| Q |
101 |
ccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtg |
200 |
Q |
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| T |
1104637 |
cccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttcttacaattctcaagtgtcatattaccatcaacccaagcatgtg |
1104538 |
T |
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| Q |
201 |
atgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccaca |
255 |
Q |
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||| || ||||||||||| | | ||||| || |||||||||||||||| ||||| |
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| T |
1104537 |
ttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccaca |
1104483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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