View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_47 (Length: 285)
Name: NF0589_low_47
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 34239952 - 34240234
Alignment:
| Q |
1 |
tccatcacagtcaaaaagaagagctgagggaagcgtggaagatgctgaagccgaggctgagcaactcaacctacgtcttctggttgttgaagttgatatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34239952 |
tccatcacagtcaaaaagaagagctgagggaagcgtggaagatgctgaagccgaggctgagcaactcaacctacgtcttctggttgttgaagttgatatc |
34240051 |
T |
|
| Q |
101 |
ttaagagctttgacagtgaaagaggatggtgaagtactgtgttgttcatgctccttcttgttgtgtttaaggaggctaataagtgttgttgtttttggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240052 |
ttaagagctttgacagtgaaagaggatggtgaagtactgtgttgttcatgctccttcttgttgtgtttaaggaggctaataagtgttgttgtttttggtt |
34240151 |
T |
|
| Q |
201 |
gatgagttcgattcaacaatgaagcagatgaaatggagatgatgctatttactgatgccatggccattgcctttgcttctcct |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
34240152 |
gatgagttcgattcaacaatgaagcagatgaaatggagatgatgctatttgctgatgccatggccattgccttagcttttcct |
34240234 |
T |
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