View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_48 (Length: 284)
Name: NF0589_low_48
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 39581038 - 39580854
Alignment:
| Q |
55 |
catcatcactatcaacaccactttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaaaccgtaccaaacaacactta |
154 |
Q |
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| T |
39581038 |
catcatcactatcaacaccactttcacctctctaccaaacagcaattatattcccttccaaatctttctacgaattcaaaaccgtaccaaacaacactta |
39580939 |
T |
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| Q |
155 |
catggtacgtttccatttctttctattctctttaccaactaatctttccactgcaaaattcaacgtttcctttccaggtttctct |
239 |
Q |
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| T |
39580938 |
catggtacgtttccatttctttctattctctttaccaactaatctttccactgcaaaattcaacgtttcctttccaggtttctct |
39580854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 39521842 - 39521683
Alignment:
| Q |
77 |
ttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaaaccgtaccaaacaacacttacatggtacgtttccatttcttt |
176 |
Q |
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| T |
39521842 |
ttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaagcaacacttacatggtacgtttccatttcttt |
39521743 |
T |
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| Q |
177 |
ctattctctttaccaactaatctttccactgcaaaattcaacgtttcctttccaggtttc |
236 |
Q |
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| T |
39521742 |
tcattctcttcaccaactaacctttcctctgcaaaattcaccgtttcagttcctggtttc |
39521683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 39525339 - 39525193
Alignment:
| Q |
77 |
ttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaaaccgtaccaaacaacacttacatggtacgtttccatttcttt |
176 |
Q |
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| T |
39525339 |
ttcacctctctaccaaacagcaaggatatttcattccgaatctttatacgagttcaaaaccgtaccaaacaacacctacatggtacgtttccatttcttt |
39525240 |
T |
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| Q |
177 |
ctattctctttaccaactaatctttccactgcaaaattcaacgtttc |
223 |
Q |
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| T |
39525239 |
tcattctcttcaccacttaacctttccactgcaaaattcaccgtttc |
39525193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 76 - 223
Target Start/End: Complemental strand, 39544636 - 39544489
Alignment:
| Q |
76 |
tttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaaaccgtaccaaacaacacttacatggtacgtttccatttctt |
175 |
Q |
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| T |
39544636 |
tttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtatgtttccatttctt |
39544537 |
T |
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| Q |
176 |
tctattctctttaccaactaatctttccactgcaaaattcaacgtttc |
223 |
Q |
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| T |
39544536 |
ttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttc |
39544489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 39576487 - 39576328
Alignment:
| Q |
77 |
ttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaaaccgtaccaaacaacacttacatggtacgtttccatttcttt |
176 |
Q |
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| T |
39576487 |
ttcacctctttaccaaacagcaagaattttccattctgaatcctcctacgaattttctaccataccaaacaacacttatatggtacgtttccgtttcttt |
39576388 |
T |
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| Q |
177 |
ctattctctttaccaactaatctttccactgcaaaattcaacgtttcctttccaggtttc |
236 |
Q |
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| T |
39576387 |
tcattctcttcaccaactaaactttccactgcaaaattcaacatttccgttcctggtttc |
39576328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 216
Target Start/End: Complemental strand, 39511596 - 39511457
Alignment:
| Q |
77 |
ttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaaaccgtaccaaacaacacttacatggtacgtttccatttcttt |
176 |
Q |
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|||| ||||||||||||| |||| || |||| |||| | |||| ||||||||||||||| | ||||||||||| || |||||||||||||||||| || |
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| T |
39511596 |
ttcatctctctaccaaactgcaaggattttccgttccgaatcttggtacgaattcaaaaccatcccaaacaacacctatatggtacgtttccatttcctt |
39511497 |
T |
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| Q |
177 |
ctattctctttaccaactaatctttccactgcaaaattca |
216 |
Q |
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| T |
39511496 |
tcattctctacaccaactaaactttccactgcaaaattca |
39511457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 3331509 - 3331579
Alignment:
| Q |
141 |
ccaaacaacacttacatggtacgtttccatttctttctattctctttaccaactaatctttccactgcaaa |
211 |
Q |
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| T |
3331509 |
ccaaacaacacctacatggtacgtttccatttcctttcattctcttcaccaattaacctttccactgcaaa |
3331579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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