View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0589_low_5 (Length: 578)

Name: NF0589_low_5
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0589_low_5
NF0589_low_5
[»] chr1 (20 HSPs)
chr1 (325-578)||(31032180-31032434)
chr1 (21-325)||(31032587-31032898)
chr1 (26-201)||(29095546-29095718)
chr1 (26-197)||(34475902-34476070)
chr1 (27-201)||(1270175-1270346)
chr1 (26-201)||(20808950-20809122)
chr1 (27-201)||(9098593-9098761)
chr1 (33-166)||(24135765-24135893)
chr1 (26-201)||(16254858-16255029)
chr1 (63-201)||(47550831-47550966)
chr1 (84-163)||(2958753-2958832)
chr1 (26-170)||(34807939-34808080)
chr1 (26-170)||(42480124-42480265)
chr1 (27-201)||(45010204-45010374)
chr1 (79-197)||(44714836-44714954)
chr1 (26-147)||(4194769-4194887)
chr1 (34-111)||(41646587-41646660)
chr1 (119-170)||(4624438-4624489)
chr1 (155-201)||(41647356-41647402)
chr1 (85-178)||(27143605-27143698)
[»] chr5 (19 HSPs)
chr5 (26-201)||(32891177-32891349)
chr5 (27-201)||(4391869-4392040)
chr5 (27-201)||(37093935-37094106)
chr5 (24-201)||(8692509-8692683)
chr5 (57-172)||(3456786-3456898)
chr5 (26-169)||(11739275-11739415)
chr5 (26-201)||(34286597-34286768)
chr5 (26-171)||(228026-228168)
chr5 (26-169)||(38614236-38614380)
chr5 (26-182)||(41326491-41326644)
chr5 (32-173)||(29223474-29223610)
chr5 (103-201)||(40925912-40926010)
chr5 (32-199)||(28434210-28434374)
chr5 (105-178)||(6614293-6614366)
chr5 (27-183)||(35672352-35672504)
chr5 (88-201)||(5481414-5481527)
chr5 (60-181)||(16516960-16517078)
chr5 (43-169)||(31644658-31644769)
chr5 (27-67)||(43141523-43141563)
[»] chr3 (20 HSPs)
chr3 (26-201)||(38176413-38176585)
chr3 (26-201)||(45166229-45166401)
chr3 (26-198)||(521791-521960)
chr3 (29-197)||(1561283-1561448)
chr3 (26-200)||(50612899-50613070)
chr3 (26-196)||(31788308-31788475)
chr3 (26-196)||(36517517-36517684)
chr3 (26-201)||(23643003-23643175)
chr3 (24-201)||(39145252-39145426)
chr3 (33-201)||(20912177-20912342)
chr3 (26-166)||(34624535-34624671)
chr3 (27-199)||(52546746-52546915)
chr3 (27-176)||(51297074-51297219)
chr3 (60-170)||(9496567-9496674)
chr3 (106-170)||(22650450-22650514)
chr3 (32-76)||(544643-544687)
chr3 (26-96)||(43203251-43203318)
chr3 (395-456)||(10755806-10755867)
chr3 (85-121)||(29011343-29011379)
chr3 (85-148)||(38169328-38169389)
[»] chr2 (19 HSPs)
chr2 (26-201)||(13685996-13686168)
chr2 (32-198)||(41464926-41465089)
chr2 (24-170)||(42263832-42263975)
chr2 (32-201)||(45093173-45093335)
chr2 (38-201)||(3810293-3810453)
chr2 (44-194)||(25414934-25415081)
chr2 (26-201)||(28429284-28429453)
chr2 (41-201)||(14941011-14941169)
chr2 (56-201)||(19898952-19899094)
chr2 (31-168)||(29689277-29689408)
chr2 (29-153)||(35676349-35676470)
chr2 (40-178)||(35323522-35323657)
chr2 (26-166)||(2752692-2752829)
chr2 (26-129)||(28716435-28716535)
chr2 (107-201)||(28716341-28716435)
chr2 (27-135)||(23454350-23454456)
chr2 (26-171)||(16058426-16058569)
chr2 (26-186)||(36690860-36691016)
chr2 (64-201)||(40126524-40126658)
[»] chr4 (16 HSPs)
chr4 (26-197)||(24683079-24683247)
chr4 (26-201)||(18375415-18375586)
chr4 (26-201)||(41633220-41633391)
chr4 (26-197)||(26179238-26179406)
chr4 (81-201)||(54358167-54358287)
chr4 (37-201)||(37674024-37674185)
chr4 (26-169)||(47281588-47281732)
chr4 (26-201)||(17847566-17847733)
chr4 (79-201)||(4512187-4512309)
chr4 (85-201)||(23348137-23348256)
chr4 (102-201)||(41878592-41878691)
chr4 (79-201)||(54021266-54021391)
chr4 (62-201)||(47838967-47839102)
chr4 (26-111)||(41878324-41878406)
chr4 (26-71)||(4098532-4098577)
chr4 (141-201)||(41497915-41497977)
[»] chr7 (9 HSPs)
chr7 (26-197)||(23991978-23992146)
chr7 (22-201)||(27425777-27425953)
chr7 (32-169)||(22326867-22327001)
chr7 (26-173)||(17611845-17611989)
chr7 (86-198)||(42195437-42195549)
chr7 (38-191)||(8307540-8307687)
chr7 (88-136)||(41405803-41405851)
chr7 (85-172)||(25686424-25686514)
chr7 (26-77)||(19479444-19479495)
[»] scaffold0002 (1 HSPs)
scaffold0002 (24-170)||(492667-492810)
[»] chr6 (8 HSPs)
chr6 (32-197)||(7646802-7646964)
chr6 (27-201)||(25935512-25935683)
chr6 (85-199)||(29487541-29487655)
chr6 (56-162)||(12607123-12607226)
chr6 (125-178)||(28898429-28898482)
chr6 (26-105)||(17366853-17366929)
chr6 (79-152)||(29637008-29637081)
chr6 (32-80)||(28898504-28898552)
[»] chr8 (16 HSPs)
chr8 (26-201)||(41322532-41322704)
chr8 (92-201)||(15561938-15562047)
chr8 (32-197)||(29314008-29314170)
chr8 (45-198)||(36473076-36473226)
chr8 (33-186)||(39112658-39112808)
chr8 (26-178)||(4851736-4851885)
chr8 (42-198)||(11653738-11653894)
chr8 (27-169)||(34392112-34392251)
chr8 (56-186)||(2001681-2001807)
chr8 (30-173)||(1005596-1005736)
chr8 (124-201)||(33888946-33889023)
chr8 (26-162)||(8551492-8551625)
chr8 (64-166)||(11643324-11643423)
chr8 (79-148)||(4794174-4794243)
chr8 (60-178)||(5548972-5549087)
chr8 (85-161)||(37919603-37919679)
[»] scaffold0132 (2 HSPs)
scaffold0132 (32-133)||(545-642)
scaffold0132 (32-133)||(8505-8602)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 325 - 578
Target Start/End: Complemental strand, 31032434 - 31032180
Alignment:
Q  325 tttgatttccaaagtcgtaagtcctcaaaagctggcaaattttcgacctatttctttagttggcagcttatataaaattttatctaaggtttttgttaat 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  31032434 tttgatttccaaagtcgtaagtcctcaaaagctggcaaattttcgacctatttctttggttggctgcttatataaaattttatctaaggttcttgttaat 31032335  T
Q  425 aggctaaggaagatggttggtaaggttgtgtcagaatctcaatcgacttttgttcaat-aaannnnnnnnggatgatattttgatagccaacgaattagt 523  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||         |||||||||||||||||||||| |||||||    
T  31032334 aggctaaggaaggtggttggtaaggttgtgtcagaatctcagtcgacttttgttcaatgaatttttttttggatgatattttgatagccaacaaattagt 31032235  T
Q  524 agatgatgcgcgtaataataagacaccatgtctgtattttgatagccaacggggg 578  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  31032234 agatgatgcgcgtaataataagacacagtgtctgtattttgatagccaacggggg 31032180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 21 - 325
Target Start/End: Complemental strand, 31032898 - 31032587
Alignment:
Q  21 ttaaacaatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggagg 120  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    ||||||||||||||||||||||||| ||||||||||    
T  31032898 ttaagcaatgttatatctctagaaaaatatcatcaagaattcttcaagaataaagatcagt---caatcacaatgcactatttgccacagttcaaggagg 31032802  T
Q  121 tgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgctannnnnnnnagaaaaatagc 220  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| |    
T  31032801 tgtggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgtcaactgtatcttgaaaaattcttgatgcta-tttttctagaaaaataac 31032703  T
Q  221 attttcctattggttttatcaaagttttttgggatttgttgataattga-------------tttgttgaattctatcacaacggtaagctcactaaagg 307  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||             |||||||||||||||||||||  |||||||||||||||    
T  31032702 attttcctattggttttatcaaagttttttgggatttgttgaaaattgatttgttgaatttctttgttgaattctatcacaac--taagctcactaaagg 31032605  T
Q  308 tttacataatacttttat 325  Q
    ||||||||||||||||||    
T  31032604 tttacataatacttttat 31032587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 29095718 - 29095546
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  29095718 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcagc---caatcacaatgcactatttgccacaattcaaggaggtgtgg 29095622  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||||||||||| |||||||||  | ||||||||||||||||||| ||||| | ||||||| | || |||||||||    
T  29095621 ctgaaaaataggaagtgaacaaagatatcatgcaattaaaacttggcaactatgtcttgaaaattttttgatgcta 29095546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 34475902 - 34476070
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||   ||||||||||||||||||| |||| ||||||||||||||||||    
T  34475902 caatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagca---gccaatcacaatgcactatctgccccaattcaaggaggtgtgg 34475998  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 197  Q
    |||||||||||| ||||||||| | ||||||||||||||||||||||| || | ||||||| ||||||||||    
T  34475999 ctgaaaaataggaagtgaacaaatcaatcatgcaattaaaacttgtcagctttgtcttgaaaaattcttgat 34476070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 1270175 - 1270346
Alignment:
Q  27 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 126  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||||||||| |   ||||| |||||||||||||||||||||||||| |||||||||    
T  1270175 aatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcaac---caatctcaatgcactatttgccacaattcaagaaggtgtggc 1270271  T
Q  127 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||||||||||| |||||| || |||||| ||||||||||||||||||||||| ||||||| |||| |||||||||    
T  1270272 tgaaaaataggaagtgaataaataaatcgtgcaattaaaacttgtcaactgtgtcttgaaaaatttttgatgcta 1270346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 20808950 - 20809122
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||||||||||||    ||||||||||||| ||||||||||||||||||||| |||||    
T  20808950 caatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagt---caatcacaatgcattatttgccacaattcaaggagatgtgg 20809046  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||||||| |||| ||||||| | |||| |||| |||||||||||| || | |||||||||| ||||||||||||||    
T  20809047 ctgaaaactaggaagtgaacgaataaaccatgtaattaaaacttgccacccgtatcttgaaaaattcttgatgcta 20809122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 9098761 - 9098593
Alignment:
Q  27 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 126  Q
    |||| |||||||||||||||||| |||| ||||||||| ||||||||||||||||   ||||||||||||||||| |||||   |||||| |||||||||    
T  9098761 aatgatatatctctagaaaaataacatcaagaattctttaagaataaagagcagc---caatcacaatgcactatctgcca---ttcaagaaggtgtggc 9098668  T
Q  127 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||| |||| | ||||||||| ||||||||||||||||||||||||| |||| | ||||| ||||||||||||||    
T  9098667 tgaataatacgaagtgaacaaataaatcatgcaattaaaacttgtcagctgtgttttgaaaaattcttgatgcta 9098593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 24135765 - 24135893
Alignment:
Q  33 atatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaa 132  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||||||||   |||||||||||||  |||||||||||||||||||||||||||||||||    
T  24135765 atatctcaagaaaaataacatcaagaattcttcaagaataaagagcagc---caatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaa 24135859  T
Q  133 atagggagtgaacaattaaatcatgcaattaaaa 166  Q
    ||||| ||||||||| ||||||||||||||||||    
T  24135860 ataggaagtgaacaaataaatcatgcaattaaaa 24135893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 16254858 - 16255029
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    |||| |||||||| | |||||||| |||  ||||||||||||||||||||| ||||   ||||||||||||||||||||||| |||| ||||||||||||    
T  16254858 caatattatatctttggaaaaataacata-agaattcttcaagaataaagatcagc---caatcacaatgcactatttgccataatttaaggaggtgtgg 16254953  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||||| |||||| ||||||||| |||||||| ||||||||  ||||||  ||| | ||||| ||||||||||||||    
T  16254954 ctgaataataggaagtgaacaaataaatcatacaattaaattttgtcagttgtgtattgaaaaattcttgatgcta 16255029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 63 - 201
Target Start/End: Original strand, 47550831 - 47550966
Alignment:
Q  63 ttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaatt 162  Q
    ||||||||||||||||||||   ||| ||||||||||||||||||||||| ||||||||||| || ||||||||| | ||||||  ||||||||||||||    
T  47550831 ttcaagaataaagagcagca---aattacaatgcactatttgccacaatttaaggaggtgtgactaaaaaataggaaatgaacatataaatcatgcaatt 47550927  T
Q  163 aaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||||||| || |||| ||||||| ||||||||||||||    
T  47550928 aaaacttgccagctgtttcttgaaaaattcttgatgcta 47550966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 2958832 - 2958753
Alignment:
Q  84 ccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaatta 163  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2958832 ccaatcacaatgcactatttgccaaaattcaaggaggtgtggctgaaaaatagggagtgaacaaataaatcatgcaatta 2958753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 34807939 - 34808080
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    |||| |||||||||| |||||||| |||| |||||||||||| ||||||||||||    ||||||||||| |||||||  || |||| ||||||||||||    
T  34807939 caattttatatctctcgaaaaataacatcaagaattcttcaaaaataaagagcagt---caatcacaatgtactatttatcataatttaaggaggtgtgg 34808035  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttg 170  Q
    |||||||||| | |||||| || ||||||||||||||||||||||    
T  34808036 ctgaaaaatatgaagtgaataaataaatcatgcaattaaaacttg 34808080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 42480124 - 42480265
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    |||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||    |||| |||||| | ||||| ||||||||||| |||||||||    
T  42480124 caatgttatatctctacaaaaataacatcaagaattcttcaagaataaatagcagt---caattacaatgtattatttaccacaattcaatgaggtgtgg 42480220  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttg 170  Q
    |||||||||||  | |||| || ||||| ||||||||||||||||    
T  42480221 ctgaaaaatagaaaatgaataaataaattatgcaattaaaacttg 42480265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 45010204 - 45010374
Alignment:
Q  27 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 126  Q
    |||| |||||||||| ||| ||| |||| ||||||||| |||||||||||||| |   |||  | |||||| |||||| ||||||||| | |||||||||    
T  45010204 aatgctatatctctaaaaagataacatcaagaattctttaagaataaagagcatc---caaatataatgcattatttgtcacaattca-gaaggtgtggc 45010299  T
Q  127 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||||||||| | ||||||||| |||||||||||||||||| ||||||  ||| | ||||| ||||||| ||||||    
T  45010300 tgaaaaataagaagtgaacaaataaatcatgcaattaaaatttgtcagatgtgttttgaaaaattctttatgcta 45010374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 44714954 - 44714836
Alignment:
Q  79 agcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgt 178  Q
    ||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||||   | | || || |||||||| ||||||||||||| ||||| |    
T  44714954 agcagtcaatcacaatgcattatttgccacaattcaacgagatgtggctgaaaaataaaaaataaaaaaataaatcatacaattaaaacttgccaactat 44714855  T
Q  179 atcttgaagaattcttgat 197  Q
    |||||||| ||||||||||    
T  44714854 atcttgaaaaattcttgat 44714836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 4194769 - 4194887
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||   | ||| ||||||||||  ||||||| ||| ||||||| ||| | ||     
T  4194769 caatgctatatctctagaaaaataacatcaagaattcttcaagaataaag---aacagtcaatcacaatatactatttaccataattcaaagagatatga 4194865  T
Q  126 ctgaaaaatagggagtgaacaa 147  Q
    |||||||||||| |||||||||    
T  4194866 ctgaaaaataggaagtgaacaa 4194887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 41646587 - 41646660
Alignment:
Q  34 tatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaat 111  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  41646587 tatctctagaaaaataacatc-agaattcttcaagaataaagagcagt---caatcacaatgcactatttgccacaat 41646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 4624438 - 4624489
Alignment:
Q  119 ggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttg 170  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  4624438 ggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttg 4624489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 41647356 - 41647402
Alignment:
Q  155 atgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  41647356 atgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgcta 41647402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 27143698 - 27143605
Alignment:
Q  85 caatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgt 178  Q
    ||||||||||| | ||||||| |||||| || ||||||||  ||||||||||| ||| ||||| || || || |||| || ||||| |||||||    
T  27143698 caatcacaatgtattatttgctacaatttaaagaggtgtgattgaaaaataggaagtaaacaaatacataatacaataaacacttgccaactgt 27143605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 32891177 - 32891349
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||||    
T  32891177 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaaaagca---gccaatcacaatgcactatttgccacaattcaaggaggtgtgg 32891273  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    || ||| ||||| ||||||||| |||||||||||||||||| ||||||||||| ||||||| |||| |||||||||    
T  32891274 ctaaaagataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattgttgatgcta 32891349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 4392040 - 4391869
Alignment:
Q  27 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 126  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||   |||| |||||||||| ||||||||||||||||||| ||||||    
T  4392040 aatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcagc---caattacaatgcactgtttgccacaattcaaggagctgtggc 4391944  T
Q  127 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||| || |||| ||||||| ||||||||||||||    
T  4391943 tgaaaaataggaagtgaacaaataaattatgcaattaaaacttgccagctgtgtcttgaaaaattcttgatgcta 4391869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 37094106 - 37093935
Alignment:
Q  27 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 126  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||||||||||    |||||||| || ||||||||| |||||||||||||||||| |    
T  37094106 aatgttatatctctagaaaaataacatcaacaattcttcaagaataaagagcagt---caatcacattgtactatttgcaacaattcaaggaggtgtgac 37094010  T
Q  127 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  37094009 tgaaaaataggaagtgaacaaataaattatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgcta 37093935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 8692509 - 8692683
Alignment:
Q  24 aacaatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgt 123  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||| |||| |   |||||| |||| |||||||||||||||||||||| ||||    
T  8692509 aacaatgttatatctctagaaaaataacatcaagaattcttcaagaataaatagcatc---caatcataatgtactatttgccacaattcaaggaagtgt 8692605  T
Q  124 ggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||| |||||||||  |||||| || |||||||||||||||||| |||||| |||| |||||||  |||||||||||||    
T  8692606 ggcagaaaaatagaaagtgaataaataaatcatgcaattaaaatttgtcagctgtgtcttgaaagattcttgatgcta 8692683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 3456786 - 3456898
Alignment:
Q  57 gaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcat 156  Q
    ||||||||||||||||||||||||    || ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  3456786 gaattcttcaagaataaagagcagt---cactcacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataggaagtgaacaaataaatcat 3456882  T
Q  157 gcaattaaaacttgtc 172  Q
    ||||||||||||||||    
T  3456883 gcaattaaaacttgtc 3456898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 11739415 - 11739275
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||     ||||| |||||||| |||||||||||||||||||||||||    
T  11739415 caatgttatatctttagaaaaataacatcaagaattcttcaagaataaaaagcaggt---aatcataatgcactgtttgccacaattcaaggaggtgtgg 11739319  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaactt 169  Q
    ||||||||||||  |||||||| ||||| |||||||||||||||    
T  11739318 ctgaaaaataggaggtgaacaaataaattatgcaattaaaactt 11739275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 34286597 - 34286768
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    |||| ||||||||||| ||||||| |||| | |||| ||||||||||||    ||||||||||||| |||||||||||||||||||| | | ||||||||    
T  34286597 caatattatatctctaaaaaaataacatcaataattattcaagaataaa----agcagccaatcacgatgcactatttgccacaattaatgaaggtgtgg 34286692  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||||||||||| | ||||||| |||||||||||||||||| ||||||  ||| ||||||| || | |||||||||    
T  34286693 ctgaaaaataggaaatgaacaaataaatcatgcaattaaaatttgtcagttgtgtcttgaaaaaattttgatgcta 34286768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 228026 - 228168
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||||||||||||||| |||| |||||| |||||||||||||| ||     ||||||||||||||||||| ||||||||||||||||||||     
T  228026 caatgatatatctctagaaaaataacatcaagaatttttcaagaataaagaacaat---caatcacaatgcactatttaccacaattcaaggaggtgtga 228122  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgt 171  Q
    ||||||| |||  ||||||||| || ||||||||||||||||||||    
T  228123 ctgaaaagtagaaagtgaacaaatatatcatgcaattaaaacttgt 228168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 38614380 - 38614236
Alignment:
Q  26 caatgttatatctc-tagaaaaatatcatcgagaattcttc---aagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggt 121  Q
    |||||||||||||  |||||||||| |||| ||||||||||   ||||||||||||| ||  ||||||||||||||||| ||||||||||||||| || |    
T  38614380 caatgttatatctaatagaaaaataacatcaagaattcttcttcaagaataaagagc-gc--ccaatcacaatgcactaattgccacaattcaagaagat 38614284  T
Q  122 gtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaactt 169  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||||    
T  38614283 gtggctgaaaaataggaagtaaacaaataaatcatgcaattaaaactt 38614236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 41326644 - 41326491
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||||||||||||||| ||||  ||  |||||||||||||||||||||   |||||||||||  ||||||| ||||||||||||||||||||    
T  41326644 caatgctatatctctagaaaaataacatcacgatctcttcaagaataaagagcagc---caatcacaatgtgctatttgacacaattcaaggaggtgtgg 41326548  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatct 182  Q
    |||||||||||| ||| ||||| || |  ||||||| || ||||| |||||||||||    
T  41326547 ctgaaaaataggaagtaaacaaatacacgatgcaataaacacttgccaactgtatct 41326491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 29223474 - 29223610
Alignment:
Q  32 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 131  Q
    ||||||| ||||||||||  ||| |||||||||||| |||||     ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  29223474 tatatctttagaaaaataatatcaagaattcttcaa-aataag----agcagtcaaccacaatgcactatttgccacaattcaaggaggtgtgactgaaa 29223568  T
Q  132 aatagggagtgaacaattaaatcatgcaattaaaacttgtca 173  Q
    |||| | |||| |||| |||||||||||||||||||||||||    
T  29223569 aataagaagtgtacaaataaatcatgcaattaaaacttgtca 29223610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 40925912 - 40926010
Alignment:
Q  103 tgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||  ||| ||||||| ||||||||||||||    
T  40925912 tgccacaattcaaagaggtgtggctgaaaaataggaagtgaacaaataaatcatacaattaaaacttgtcagatgtgtcttgaaaaattcttgatgcta 40926010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 28434210 - 28434374
Alignment:
Q  32 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 131  Q
    |||||||||||||||||| ||| |||||||||| || |||||||||||||   |||| |||||||||||||| |||||||| ||| || |||| ||| ||    
T  28434210 tatatctctagaaaaataacattgagaattctttaaaaataaagagcagc---caattacaatgcactatttaccacaatttaagaagatgtgactgtaa 28434306  T
Q  132 aatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgc 199  Q
    |||||  | |||| || |||||||||||||||||||| |  ||||||||||  || ||||||||||||    
T  28434307 aatagaaaatgaataaataaatcatgcaattaaaactcgctaactgtatctaaaaaaattcttgatgc 28434374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 6614366 - 6614293
Alignment:
Q  105 ccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgt 178  Q
    |||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  6614366 ccacaattcaaggaggtgtgcctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgtcgactgt 6614293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 183
Target Start/End: Complemental strand, 35672504 - 35672352
Alignment:
Q  27 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 126  Q
    |||||||||| |||||||||||| |||  |||||| ||||||||||||||   |||| |||||||||||||||||||  | ||||| |||||  ||| |     
T  35672504 aatgttatatttctagaaaaataacattaagaatttttcaagaataaaga---gcagtcaatcacaatgcactatttatcgcaatttaaggaaatgttg- 35672409  T
Q  127 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatctt 183  Q
    | || |||||| ||||||||| |||||||||||||||||| || |||||||| ||||    
T  35672408 taaacaataggaagtgaacaaataaatcatgcaattaaaatttatcaactgtgtctt 35672352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 5481414 - 5481527
Alignment:
Q  88 tcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaag 187  Q
    |||||||||| ||||||||||||||||  ||| |||||||||||||||   ||||||||| ||||||||||| |||||| ||  ||||||| |||| ||     
T  5481414 tcacaatgcattatttgccacaattcatagagatgtggctgaaaaataaaaagtgaacaaataaatcatgcagttaaaatttaccaactgtgtcttaaaa 5481513  T
Q  188 aattcttgatgcta 201  Q
    ||||||||||||||    
T  5481514 aattcttgatgcta 5481527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 16517078 - 16516960
Alignment:
Q  60 ttcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgca 159  Q
    ||||| |||||||||||||||    |||||| ||| ||||  |||| ||||| || |||| ||| |||||| ||||| |||||||||| ||||||||| |    
T  16517078 ttctttaagaataaagagcagt---caatcataattcactgcttgcaacaatacacggagatgttgctgaataatagagagtgaacaaataaatcatgaa 16516982  T
Q  160 attaaaacttgtcaactgtatc 181  Q
    ||||||||||| || |||||||    
T  16516981 attaaaacttgccagctgtatc 16516960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 31644658 - 31644769
Alignment:
Q  43 aaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtg 142  Q
    ||||||| |||| | ||||||||||||||||||   ||||||||||||||||||||||||| ||            | ||||| ||||||||||| ||||    
T  31644658 aaaaataacatcaataattcttcaagaataaag---agcagccaatcacaatgcactatttacc------------gatgtggttgaaaaataggaagtg 31644742  T
Q  143 aacaattaaatcatgcaattaaaactt 169  Q
    ||||| |||| ||||||||||||||||    
T  31644743 aacaaataaaccatgcaattaaaactt 31644769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 43141523 - 43141563
Alignment:
Q  27 aatgttatatctctagaaaaatatcatcgagaattcttcaa 67  Q
    |||||||| |||||||||||||| |||| ||||||||||||    
T  43141523 aatgttatttctctagaaaaatagcatcaagaattcttcaa 43141563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 6e-60; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 38176585 - 38176413
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||| |||||||||||||||| ||||||||||||||||||    
T  38176585 caatgttatatctctagaaaaatatcatcaagaattcttcaagaataaagagcagc---caatcgcaatgcactatttgcctcaattcaaggaggtgtgg 38176489  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||||||||| | ||||||||| |||| ||||||||||||||||| ||||||| ||||||| ||||||| ||||||    
T  38176488 ctgaaaaatatgaagtgaacaaataaaacatgcaattaaaacttgccaactgtgtcttgaaaaattcttaatgcta 38176413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 45166229 - 45166401
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||| ||||    
T  45166229 caatgttatatctctagaaaaataacatcaagaattcttcaataataaagagca---gccaatcacaatgcactatttgccacaattcaaggaggcgtgg 45166325  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||| ||||||  ||||||| ||||||||||||||    
T  45166326 ctgaaaaatagggagtggacaaataaatcatgcaattaaaatttgccaactgcgtcttgaaaaattcttgatgcta 45166401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 521960 - 521791
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| ||||| |||||| ||||| |||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  521960 caatgctatatatctagataaataacatcaagaattcttcaagaataaagagcagc---caatcacaatgcactatttgccacaattcaaggaggtgtgg 521864  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatg 198  Q
    |||||||||||| ||||||||| |||||||||||||||||||||| ||||||| |||| || |||||||||||    
T  521863 ctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgacaactgtgtcttaaaaaattcttgatg 521791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 1561448 - 1561283
Alignment:
Q  29 tgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctg 128  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||    
T  1561448 tgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaac---caatcacaatgcactatttgccacaattcaaggaggtgtggctg 1561352  T
Q  129 aaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 197  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||| |||| |||  || ||||||||||    
T  1561351 aaaaataggaagtgaacaaataaatcatgcaattgaaacttgtcagctgtgtctgaaaaaattcttgat 1561283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 50613070 - 50612899
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||     
T  50613070 caatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagc---caatcacaatgcactatttgccacaattcaaggaggtgtga 50612974  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgct 200  Q
    ||||||||||   ||||||||| ||||| ||||||||||||||||||| |||| | ||||| |||||||||||||    
T  50612973 ctgaaaaatataaagtgaacaaataaattatgcaattaaaacttgtcagctgtgtattgaaaaattcttgatgct 50612899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 31788308 - 31788475
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||     
T  31788308 caatgatatatctctagaaaaataacatcaagaattcttcaagaataaagagca---gccaatcacaatgcactatttaccacaattcaaggaggtgtga 31788404  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttga 196  Q
     ||||||||||| ||||||||| |||||| |||| |||||||||||||| ||| ||||||| |||||||||    
T  31788405 ttgaaaaataggaagtgaacaaataaatcttgcagttaaaacttgtcaattgtgtcttgaaaaattcttga 31788475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 36517517 - 36517684
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| ||||| |||||| ||||| |||| |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||     
T  36517517 caatgctatatatctagacaaataacatcaagaattcttcaagaataaagagcagt---caatcacaatgcactatttgccacaattcaaggaggtgtga 36517613  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttga 196  Q
     | ||||||||| ||||||||| |||||||||||||||||||||| ||||||| | ||||| |||||||||    
T  36517614 ataaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactgtgttttgaaaaattcttga 36517684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 23643175 - 23643003
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||||| |||||||||||||||| |||| ||||||||||||||||||| |  ||    ||||||||||||||||||||||||||||||||||||||||     
T  23643175 caatgttgtatctctagaaaaataacatcaagaattcttcaagaataaatattagt---caatcacaatgcactatttgccacaattcaaggaggtgtga 23643079  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    || ||||||||| ||||||||| ||||| ||| |||||||| |||||| |||| ||||||| ||||||||||||||    
T  23643078 ctaaaaaataggaagtgaacaaataaattatggaattaaaatttgtcagctgtgtcttgaaaaattcttgatgcta 23643003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 39145252 - 39145426
Alignment:
Q  24 aacaatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgt 123  Q
    ||||||| ||||||||||||||||||  ||| ||||||||| ||||||||| ||||||   |||| |||||||||||||||| ||||||||| ||||| |    
T  39145252 aacaatgctatatctctagaaaaataatatcaagaattctttaagaataaaaagcagc---caattacaatgcactatttgctacaattcaatgaggtat 39145348  T
Q  124 ggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    | |||||||||||| | |||||||  ||||||| ||||||||||||| ||||||| ||||||  ||||||||||||||    
T  39145349 gactgaaaaataggaaatgaacaaagaaatcatacaattaaaacttgacaactgtgtcttgacaaattcttgatgcta 39145426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 33 - 201
Target Start/End: Original strand, 20912177 - 20912342
Alignment:
Q  33 atatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaa 132  Q
    |||||| || ||||||| |||| |||||||||||||||||||||||||    |||| ||||||||||||||| || |||| ||||||||||| |||||||    
T  20912177 atatctttaaaaaaataacatcaagaattcttcaagaataaagagcagt---caataacaatgcactatttgtcataatttaaggaggtgtgactgaaaa 20912273  T
Q  133 atagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| || | |||| || ||||||||||||||    
T  20912274 ataggaagtgaacaaataaatcatgcaattaaaacttatcagctatgtctttaaaaattcttgatgcta 20912342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 26 - 166
Target Start/End: Complemental strand, 34624671 - 34624535
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||||||||||||||| |||  ||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||  |||| ||||||    
T  34624671 caatgctatatctctagaaaaataacata-agaattcttcaagaataaagagcagc---caatcacaatgcactatttaccacaatttgaggaagtgtgg 34624576  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaa 166  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  34624575 ctgaaaaataggaagtgaacaaataaatcatgcaattaaaa 34624535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 52546746 - 52546915
Alignment:
Q  27 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 126  Q
    |||| ||||||| |||||||||| |||| | ||||||||||||||||||||||   |||||||||||||  ||||||| |||||||||| ||||||||      
T  52546746 aatgatatatctttagaaaaataacatcaaaaattcttcaagaataaagagca---gccaatcacaatgtgctatttgtcacaattcaatgaggtgtgag 52546842  T
Q  127 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgc 199  Q
    ||||||||||| | ||||||| ||||| ||||||||||||||||| |  ||| ||||| | ||||||||||||    
T  52546843 tgaaaaataggaaatgaacaaataaattatgcaattaaaacttgtaaggtgtgtcttggaaaattcttgatgc 52546915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 51297219 - 51297074
Alignment:
Q  27 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 126  Q
    ||||||||||||||||||||||| |||| ||| | ||||||| ||||||| ||||   ||| |||||||||||||||||||||||||||  |||| || |    
T  51297219 aatgttatatctctagaaaaataacatcaagagt-cttcaagcataaagaacagc---caaccacaatgcactatttgccacaattcaaaaaggtatgac 51297124  T
Q  127 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaact 176  Q
    ||||||||||  ||||||||| |||||||||||||||||| || ||||||    
T  51297123 tgaaaaatagaaagtgaacaaataaatcatgcaattaaaatttatcaact 51297074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 9496567 - 9496674
Alignment:
Q  60 ttcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgca 159  Q
    |||||||||||||||||| |||   |||||||||| |||| ||||||||||| ||  | ||||| ||||||||||||||||||||||| |||||||||||    
T  9496567 ttcttcaagaataaagagtagc---caatcacaattcactgtttgccacaatacacagtggtgttgctgaaaaatagggagtgaacaaataaatcatgca 9496663  T
Q  160 attaaaacttg 170  Q
     ||||| ||||    
T  9496664 gttaaagcttg 9496674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 22650514 - 22650450
Alignment:
Q  106 cacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttg 170  Q
    ||||||| ||||||||||||||||||| ||   ||||||||| ||||||||||||||||||||||    
T  22650514 cacaatttaaggaggtgtggctgaaaagtaaaaagtgaacaaataaatcatgcaattaaaacttg 22650450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 544643 - 544687
Alignment:
Q  32 tatatctctagaaaaatatcatcgagaattcttcaagaataaaga 76  Q
    |||||||||||||||||| || | |||||||||||||||||||||    
T  544643 tatatctctagaaaaataacaccaagaattcttcaagaataaaga 544687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 43203251 - 43203318
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgc 96  Q
    ||||| ||||| |||| ||||||| |||| |||||||||||| |||||||   ||||||||||||||||||    
T  43203251 caatgctatatttctaaaaaaataacatcaagaattcttcaaaaataaag---agcagccaatcacaatgc 43203318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 456
Target Start/End: Complemental strand, 10755867 - 10755806
Alignment:
Q  395 tataaaattttatctaaggtttttgttaataggctaaggaagatggttggtaaggttgtgtc 456  Q
    ||||||||||||||||| ||||| | |||| |||| || ||| ||||||||||||| |||||    
T  10755867 tataaaattttatctaaagttttggctaatcggcttagaaaggtggttggtaaggtggtgtc 10755806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 29011379 - 29011343
Alignment:
Q  85 caatcacaatgcactatttgccacaattcaaggaggt 121  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  29011379 caatcacaatgtactatttaccacaattcaaggaggt 29011343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 38169389 - 38169328
Alignment:
Q  85 caatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaat 148  Q
    |||||||||| ||||  ||| |||||| |||||||||||| || ||||||||| ||||||||||    
T  38169389 caatcacaatccact--ttgtcacaatacaaggaggtgtgactaaaaaataggaagtgaacaat 38169328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 13685996 - 13686168
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||||||||||||||| |||| |||||| |||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||    
T  13685996 caatgctatatctctagaaaaataacatcaagaatttttcaagaataaagagca---gccaatcacaatgcactacttgccacaattcaaggaggtgtgg 13686092  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||||||||||| ||||||||| |||||||||||||||||||||| ||| ||| |||| || ||||||||||||||    
T  13686093 ctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaattgtgtcttaaaaaattcttgatgcta 13686168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 41465089 - 41464926
Alignment:
Q  32 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 131  Q
    |||||||||||||||||| |||| |||||||||||||||||||| ||||| |   |||||||||||||||||||| |||||||||||||||||| |||||    
T  41465089 tatatctctagaaaaataacatcaagaattcttcaagaataaagtgcagcgg---atcacaatgcactatttgccgcaattcaaggaggtgtggttgaaa 41464993  T
Q  132 aatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatg 198  Q
    |||||  ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  41464992 aatagaaagtgaacaaataaatcatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatg 41464926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 42263832 - 42263975
Alignment:
Q  24 aacaatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgt 123  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||   |||||||||||||||| ||||| ||||||||||||||||||    
T  42263832 aacaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagca---gccaatcacaatgcacaatttgtcacaattcaaggaggtgt 42263928  T
Q  124 ggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttg 170  Q
    |||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  42263929 ggctgaaaaataggaaatgaacaaataaattatgcaattaaaacttg 42263975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 45093335 - 45093173
Alignment:
Q  32 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 131  Q
    |||||||||||||||||| |||| | ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| || ||||||    
T  45093335 tatatctctagaaaaataacatcaataattcttcaagaataaagagca-------atcacaatgcactatttgccacaattcaaggaggtatgactgaaa 45093243  T
Q  132 aatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||||| ||| |||||||||||||||||||||||| ||  |||||||||||| || ||||||||||||||    
T  45093242 aataggaagtaaacaattaaatcatgcaattaaaatttcccaactgtatcttaaaaaattcttgatgcta 45093173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 3810453 - 3810293
Alignment:
Q  38 tctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagg 137  Q
    |||||||||||| |||  | |||||||||||||||||||| |||   |||| ||||||||||||||||||||||||||||||||||| |||||||||| |    
T  3810453 tctagaaaaataacattaataattcttcaagaataaagagtagc---caattacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataag 3810357  T
Q  138 gagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
     ||||||||| |||||||||||||||||||||| || |||| ||||||| | ||||||||||||    
T  3810356 aagtgaacaaataaatcatgcaattaaaacttgccagctgtgtcttgaaaatttcttgatgcta 3810293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 25414934 - 25415081
Alignment:
Q  44 aaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtga 143  Q
    |||||| |||| ||||||||||||||||||||| |||    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||  |||||    
T  25414934 aaaataacatcaagaattcttcaagaataaagaacagt---caatcacaatgcactatttgccacaattcaaggaggtatggctgaaaaaaagaaagtga 25415030  T
Q  144 acaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattctt 194  Q
    |||| ||||||||||||||||||||| ||| |||| ||||||| |||||||    
T  25415031 acaaataaatcatgcaattaaaacttatcagctgtgtcttgaaaaattctt 25415081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 28429284 - 28429453
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| ||||||| ||||||||||  ||| ||||||||||||||||||||||||||   ||| ||||||||| ||||||||| |||| |||||||||||     
T  28429284 caatgctatatctttagaaaaataatatcaagaattcttcaagaataaagagcagc---caaacacaatgcattatttgccataatttaaggaggtgtga 28429380  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||||||||| | ||||||||| |||||||||||||||||||||||||   || || |||| ||||||||||||||    
T  28429381 ctgaaaaataagaagtgaacaaataaatcatgcaattaaaacttgtca---gtgtcatgaaaaattcttgatgcta 28429453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 14941169 - 14941011
Alignment:
Q  41 agaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggct-gaaaaataggga 139  Q
    ||||||||| |||| | |||||||||||||||||||||||    ||||||||||||||||||||||||||||||| |||||||| || |||||||| | |    
T  14941169 agaaaaataacatcaataattcttcaagaataaagagcagt---caatcacaatgcactatttgccacaattcaaagaggtgtgactcgaaaaataagaa 14941073  T
Q  140 gtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||||||| ||||||||| |||||||||||| ||  ||| ||||||| ||||||||||||||    
T  14941072 gtgaacaaataaatcatgaaattaaaacttgccagttgtgtcttgaaaaattcttgatgcta 14941011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 56 - 201
Target Start/End: Original strand, 19898952 - 19899094
Alignment:
Q  56 agaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatca 155  Q
    ||||||||||||||||||||||||   ||||||||||||||| |||||| |||||||||||||||| | |||||||| |||| ||||||||| |||||||    
T  19898952 agaattcttcaagaataaagagca---gccaatcacaatgcattatttgtcacaattcaaggaggtattgctgaaaattaggaagtgaacaaataaatca 19899048  T
Q  156 tgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||||||||||||||| ||  ||| ||||||| ||||| ||||||||    
T  19899049 tgcaattaaaacttgccagttgtgtcttgaaaaattcgtgatgcta 19899094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 29689408 - 29689277
Alignment:
Q  31 ttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaa 130  Q
    ||||||||||||||||||| |||| |||||| || ||||||||||||||      |||||||||||||||||||| | ||||||||||||| || |||||    
T  29689408 ttatatctctagaaaaataacatcaagaattttttaagaataaagagca------aatcacaatgcactatttgctataattcaaggaggtttgactgaa 29689315  T
Q  131 aaatagggagtgaacaattaaatcatgcaattaaaact 168  Q
    ||||||| ||||||| | ||||||||||||||||||||    
T  29689314 aaataggaagtgaactaataaatcatgcaattaaaact 29689277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 35676470 - 35676349
Alignment:
Q  29 tgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctg 128  Q
    ||||||||||||| ||||||| |||| ||||||||| |||||||||||||||    ||| |||||||||||||||||||||||||||||||||||| |||    
T  35676470 tgttatatctctaaaaaaataacatcaagaattctttaagaataaagagcagt---caaccacaatgcactatttgccacaattcaaggaggtgtgactg 35676374  T
Q  129 aaaaatagggagtgaacaattaaat 153  Q
    ||||||| | ||||||||| |||||    
T  35676373 aaaaatatgaagtgaacaaataaat 35676349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 35323657 - 35323522
Alignment:
Q  40 tagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaataggga 139  Q
    |||||||||| |||| | ||||||||||||||||||| |||    |||||||||| |||||||||||||||||||| |||||||||||||||||||   |    
T  35323657 tagaaaaataacatcaaaaattcttcaagaataaagaacagt---caatcacaatacactatttgccacaattcaatgaggtgtggctgaaaaataaaaa 35323561  T
Q  140 gtgaacaattaaatcatgcaattaaaacttgtcaactgt 178  Q
     ||||||  ||||||||| ||||||||||||||||||||    
T  35323560 ctgaacatataaatcatgtaattaaaacttgtcaactgt 35323522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 26 - 166
Target Start/End: Complemental strand, 2752829 - 2752692
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| ||||| |||||||||||| |||  ||||||||||||||| ||| ||||||   ||||||||||||||||||||||||||||||||||| | ||     
T  2752829 caatgatatatttctagaaaaataacattaagaattcttcaagaaaaaatagcagc---caatcacaatgcactatttgccacaattcaaggagatctga 2752733  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaa 166  Q
    |||||||||| | |||||| || |||||||| |||||||||    
T  2752732 ctgaaaaataagaagtgaataaataaatcatacaattaaaa 2752692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 28716535 - 28716435
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||||| || ||| |   ||||||||||||||||||||||||||||| |||||||||    
T  28716535 caatgttatatctctagaaaaatgacatcaagaattcttcaagaataaatagtagccg---atcacaatgcactatttgccacaattcaaagaggtgtgg 28716439  T
Q  126 ctga 129  Q
    ||||    
T  28716438 ctga 28716435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 28716435 - 28716341
Alignment:
Q  107 acaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| ||  ||| ||||||| ||||||||||||||    
T  28716435 acaattcaaagaggtgtggctgaaaaataggaagtgaacaaataaataatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgcta 28716341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 23454456 - 23454350
Alignment:
Q  27 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcact-atttgccacaattcaaggaggtgtgg 125  Q
    |||| |||||||||||||||||| |||  | |||||||||||||||||||   |||| ||||||||||||||| ||||| ||||||||||||||||| |     
T  23454456 aatgctatatctctagaaaaataacataaaaaattcttcaagaataaaga---gcagtcaatcacaatgcactaatttgacacaattcaaggaggtgcga 23454360  T
Q  126 ctgaaaaata 135  Q
    ||||||||||    
T  23454359 ctgaaaaata 23454350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 16058569 - 16058426
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggag--gtgt 123  Q
    ||||| |||||||||||||||||| |||  |||||||||||||||||||||| ||    | || | |||| || ||||| ||||||||||||||  ||||    
T  16058569 caatgctatatctctagaaaaataacattaagaattcttcaagaataaagagtagt---ctataataatgaac-atttgtcacaattcaaggagttgtgt 16058474  T
Q  124 ggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgt 171  Q
    |||||||||||| | |||||| || |||||||||||| ||||||||||    
T  16058473 ggctgaaaaatatgaagtgaataaataaatcatgcaaataaaacttgt 16058426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 36691016 - 36690860
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    |||||||||||||||| ||| ||| |||| | |||||||||| |||||| | || |   |||| | ||| || |||||||||||||||||||| | ||||    
T  36691016 caatgttatatctctaaaaatataacatcaaaaattcttcaaaaataaaaaacatc---caattataatacagtatttgccacaattcaaggaagcgtgg 36690920  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaa 186  Q
    ||| ||| |||| ||||||||| ||||||| | |||||||| |||||| |||| |||||||    
T  36690919 ctg-aaagtaggaagtgaacaaataaatcaagtaattaaaatttgtcagctgtgtcttgaa 36690860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 64 - 201
Target Start/End: Complemental strand, 40126658 - 40126524
Alignment:
Q  64 tcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaatta 163  Q
    |||||||||||||||||    || ||| ||||||||||||  ||||||| ||| || | | | ||||||||||| ||||||||| |||||||| ||||||    
T  40126658 tcaagaataaagagcagt---cattcataatgcactatttatcacaatttaagaagatatagttgaaaaataggaagtgaacaaataaatcatacaatta 40126562  T
Q  164 aaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||| |||| | ||||||||| || |||||| |||||||    
T  40126561 aaatttgtgagctgtatcttaaaaaattctcgatgcta 40126524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 24683079 - 24683247
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| | |||||||     
T  24683079 caatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagca---gccaatcacaatgcactatttgccacaattcaggaaggtgtga 24683175  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 197  Q
    |||||||||||| ||||||||| ||||||||||||||||||||| |||| ||| ||||||| ||||||||||    
T  24683176 ctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttatcaagtgtgtcttgaaaaattcttgat 24683247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 18375586 - 18375415
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||| || |    |||||||||||||||||||||||||||||||||||||||||    
T  18375586 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaagtgcggt---caatcacaatgcactatttgccacaattcaaggaggtgtgg 18375490  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||| |||||||| ||||||||| |||||||||||||||||||||| ||  ||| ||||||| ||||||||||||||    
T  18375489 ctg-aaaataggaagtgaacaaataaatcatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgcta 18375415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 41633220 - 41633391
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||    
T  41633220 caatgttatatctctagaaaaataacattaagaattcttcaagaataaagagca---gccaatcacaatgcactacttgccacaattcaaggaggtgtgg 41633316  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||||||||||| ||||||||| ||||| ||| |||||||| |||||| || | ||||||| ||||||||||||||    
T  41633317 ctgaaaaataggaagtgaacaaataaat-atgtaattaaaatttgtcagctttgtcttgaaaaattcttgatgcta 41633391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 26179406 - 26179238
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||||||||   |||||||| ||||||||||  ||||||||||||||||||||    
T  26179406 caatgttatatctctagaaaaataacattaagaattcttcaagaataaagagcagc---caatcacagtgcactatttaacacaattcaaggaggtgtgg 26179310  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 197  Q
    |||||||||||| ||||||||| ||||||||  |||| ||||||| || |||| | || || ||||||||||    
T  26179309 ctgaaaaataggaagtgaacaaataaatcatcaaattgaaacttgacagctgtgttttaaaaaattcttgat 26179238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 81 - 201
Target Start/End: Original strand, 54358167 - 54358287
Alignment:
Q  81 cagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtat 180  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| | |    
T  54358167 cagccaatcacaatgcactatttgccacaatttaagggggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactatgt 54358266  T
Q  181 cttgaagaattcttgatgcta 201  Q
    |||||| ||||||||||||||    
T  54358267 cttgaaaaattcttgatgcta 54358287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 37674185 - 37674024
Alignment:
Q  37 ctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatag 136  Q
    ||||||||||||| |||| |||||||||||||| ||||||||||    ||||||||||| ||||||| | ||||||||| |||||||||||||||||||     
T  37674185 ctctagaaaaataacatcaagaattcttcaagactaaagagcagt---caatcacaatgtactatttactacaattcaaagaggtgtggctgaaaaataa 37674089  T
Q  137 ggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
      ||| ||||| |||||||||||||||||||||||||   || ||||||| ||||||||||||||    
T  37674088 aaagttaacaaataaatcatgcaattaaaacttgtcacacgtgtcttgaaaaattcttgatgcta 37674024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 47281732 - 47281588
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaat----tcaaggaggt 121  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||||||||| |  ||   |||||||||||||||||||||||| |    ||||||||||    
T  47281732 caatgttatatgtctagaaaaataacatcaagaattcttcaagaataaagaacgaca---aatcacaatgcactatttgccacattaatttcaaggaggt 47281636  T
Q  122 gtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaactt 169  Q
    |||| ||||||||||| ||||||||| |||||||||||||||||||||    
T  47281635 gtggttgaaaaataggaagtgaacaaataaatcatgcaattaaaactt 47281588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 17847733 - 17847566
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||||||||||||||| |||  | |||||||||||| |||| |||||    |||||| |||||||     |||||||||||||||||||||     
T  17847733 caatgctatatctctagaaaaataacataaaaaattcttcaagattaaaaagcagt---caatcataatgcac-----gccacaattcaaggaggtgtga 17847642  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    | |||||||||  ||||||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  17847641 cagaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgcta 17847566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 4512309 - 4512187
Alignment:
Q  79 agcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgt 178  Q
    ||||| ||||||||||  ||||||||||||||||||||||| |||| |||||||||||| ||| ||||| ||||| |||||||||||||||| || |||     
T  4512309 agcagtcaatcacaatatactatttgccacaattcaaggagatgtgactgaaaaataggaagtaaacaaataaatgatgcaattaaaacttgccacctga 4512210  T
Q  179 atcttgaagaattcttgatgcta 201  Q
     | ||||| ||||||||||||||    
T  4512209 gtattgaaaaattcttgatgcta 4512187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 23348256 - 23348137
Alignment:
Q  85 caatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaat---agggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatc 181  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||||||||   ||| ||||||||| ||||||||||||||||||||||||   ||| ||    
T  23348256 caatcacaatacactatttaccataattcaaggaggtgtggctgaaaaataggaggaagtgaacaaataaatcatgcaattaaaacttgtcggttgtttc 23348157  T
Q  182 ttgaagaattcttgatgcta 201  Q
    ||||| |||| |||||||||    
T  23348156 ttgaaaaattattgatgcta 23348137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 41878592 - 41878691
Alignment:
Q  102 ttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||||||||||||||  |||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||  | | ||||||| ||||||||||||||    
T  41878592 ttgccacaattcaataaggtgtggctgaaaaataggaagtaaacaaataaatcatgcaattaaaacttgtcagttatgtcttgaaaaattcttgatgcta 41878691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 54021391 - 54021266
Alignment:
Q  79 agcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatca---tgcaattaaaacttgtcaac 175  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||  ||| ||||| |||| ||      ||||||||||||||| |    
T  54021391 agcagccaatcacaatgcactatgtgccacaatttaaggaggtgtggttgaaaaatagaaagtaaacaaataaagcaattaaaaattaaaacttgtcagc 54021292  T
Q  176 tgtatcttgaagaattcttgatgcta 201  Q
    | |||||| || ||||||||||||||    
T  54021291 tttatcttaaaaaattcttgatgcta 54021266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 47839102 - 47838967
Alignment:
Q  62 cttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaat 161  Q
    |||||||||||||||||||    ||| ||||||| |||||||||||||||| ||||||||||||| |||||||||  | |||||||  | ||||||||||    
T  47839102 cttcaagaataaagagcagt---caaccacaatgtactatttgccacaatttaaggaggtgtggccgaaaaatagaaaatgaacaaaaacatcatgcaat 47839006  T
Q  162 taaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||| ||   || |||| ||||||| ||||||||||||||    
T  47839005 taaatctcaccagctgtgtcttgaa-aattcttgatgcta 47838967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 41878324 - 41878406
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaat 111  Q
    ||||||| ||||| |||||||||| ||||  |||||||||| ||||||||| ||||   ||||||||||||||||||||| |||||    
T  41878324 caatgttgtatctatagaaaaataacatcatgaattcttcatgaataaagatcagc---caatcacaatgcactatttgctacaat 41878406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 4098577 - 4098532
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaat 71  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||    
T  4098577 caatgttatatctctagaaaaataacatcaagaattcttcaagaat 4098532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 41497977 - 41497915
Alignment:
Q  141 tgaacaattaaatcatgcaattaaaacttgtcaac--tgtatcttgaagaattcttgatgcta 201  Q
    ||||||| ||||||||||||||||||||| |||||  ||| ||||||| |||| |||||||||    
T  41497977 tgaacaaataaatcatgcaattaaaacttatcaactgtgtgtcttgaataatttttgatgcta 41497915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 23992146 - 23991978
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    |||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||    
T  23992146 caatgttatatctctacaaatataacatcaagaattcttcaagaataaagagcagc---ctatcacaatgcactatttgccacaattcaaggaggtgtgg 23992050  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 197  Q
    |||||||||||  |||||||||  | ||||||||||||||||||||||  ||| ||||||| ||||||||||    
T  23992049 ctgaaaaatagaaagtgaacaaaaatatcatgcaattaaaacttgtcagttgtgtcttgaaaaattcttgat 23991978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 27425953 - 27425777
Alignment:
Q  22 taaacaatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggt 121  Q
    ||||||||| ||||||| |||||||||| |||| ||||||||| ||||||||||| |||    ||||||||||||| ||||||||||||||||||||| |    
T  27425953 taaacaatgctatatctttagaaaaataacatcaagaattcttaaagaataaagaacagt---caatcacaatgcattatttgccacaattcaaggagtt 27425857  T
Q  122 gtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||| |||| |||||||||    
T  27425856 gtggttgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattgttgatgcta 27425777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 32 - 169
Target Start/End: Original strand, 22326867 - 22327001
Alignment:
Q  32 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 131  Q
    ||||||| |||||||||| |||| ||||||||||||||| ||||||| |    ||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  22326867 tatatctttagaaaaataacatcaagaattcttcaagaagaaagagccgt---caatcacaatgtactatttgccacaattcagggaggtgtgactgaaa 22326963  T
Q  132 aatagggagtgaacaattaaatcatgcaattaaaactt 169  Q
    |||||  ||||||||| |||||||||||||||||||||    
T  22326964 aatagaaagtgaacaaataaatcatgcaattaaaactt 22327001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 17611845 - 17611989
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||| ||||||||||| |||| ||||||||||||||||||||| || |   |||||| |||| | ||||||||||||||||||||| |||||    
T  17611845 caatgctatatcgctagaaaaataacatcaagaattcttcaagaataaagaacaac---caatcataatgaattatttgccacaattcaaggagatgtgg 17611941  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtca 173  Q
    || ||||||||| |||||| || |||||||| ||||||||||||||||    
T  17611942 ctaaaaaataggaagtgaataaataaatcatacaattaaaacttgtca 17611989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 42195437 - 42195549
Alignment:
Q  86 aatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttga 185  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| | |  |||||||| |    
T  42195437 aatctcaatgcactatttaccacaattcaaggaggtgtgtctgaaaaataaggagtgaacaaataaatcatgcaattaaaactttttagttgtatcttaa 42195536  T
Q  186 agaattcttgatg 198  Q
    | |||||||||||    
T  42195537 aaaattcttgatg 42195549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 191
Target Start/End: Original strand, 8307540 - 8307687
Alignment:
Q  38 tctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagg 137  Q
    |||||||||||| |||| |||||| || |||||||||||  ||    |||||| ||||||||||| ||||||||||||||   ||||||| |||||||||    
T  8307540 tctagaaaaataacatcaagaattttttaagaataaagacgagt---caatcataatgcactattagccacaattcaagg---tgtggctcaaaaatagg 8307633  T
Q  138 gagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaatt 191  Q
     ||||||||| ||||||||||| |||||| ||| ||  ||| ||||||| ||||    
T  8307634 aagtgaacaaataaatcatgcagttaaaatttgccagttgtgtcttgaaaaatt 8307687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 41405851 - 41405803
Alignment:
Q  88 tcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatag 136  Q
    |||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  41405851 tcacaatgcactatttgccacaatacaaggaggtatggttgaaaaatag 41405803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 25686424 - 25686514
Alignment:
Q  85 caatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaac-aatta--aatcatgcaattaaaacttgtc 172  Q
    |||||| |||| ||||||| |||||||| ||||||||||||||| |||||||| ||| ||| |||||  |||||| |||| ||||||||||    
T  25686424 caatcataatgtactatttaccacaatttaaggaggtgtggctggaaaataggaagtaaacaaattaataatcatacaatcaaaacttgtc 25686514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 19479444 - 19479495
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagag 77  Q
    ||||| |||||||||||||||||| |||| | |||||||||| |||||||||    
T  19479444 caatgctatatctctagaaaaataacatcaaaaattcttcaaaaataaagag 19479495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 492667 - 492810
Alignment:
Q  24 aacaatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgt 123  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||   |||||||||||||||| ||||| ||||||||||||||||||    
T  492667 aacaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagca---gccaatcacaatgcacaatttgtcacaattcaaggaggtgt 492763  T
Q  124 ggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttg 170  Q
    |||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  492764 ggctgaaaaataggaaatgaacaaataaattatgcaattaaaacttg 492810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 7646964 - 7646802
Alignment:
Q  32 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 131  Q
    |||||||||||||||||| |||| ||||||||| || |||||||||||||   |||||||||||||||||||||||||||||||||| ||||| ||||||    
T  7646964 tatatctctagaaaaataacatcaagaattctttaaaaataaagagcagc---caatcacaatgcactatttgccacaattcaaggatgtgtgactgaaa 7646868  T
Q  132 aatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 197  Q
    |||||| | ||||||| |||||||||||||||||||||| ||  ||| ||||||| ||||| ||||    
T  7646867 aataggaaatgaacaaataaatcatgcaattaaaacttgccagatgtgtcttgaaaaattcctgat 7646802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 25935512 - 25935683
Alignment:
Q  27 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 126  Q
    ||||||||||||||||||||||| |||  |||||| ||||||||||||||||| |    ||||| |||| |||||||| ||||||| |||||||||||||    
T  25935512 aatgttatatctctagaaaaataacattaagaattattcaagaataaagagcatct---aatcataatgtactatttgtcacaatttaaggaggtgtggc 25935608  T
Q  127 tgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    ||||||||||  ||||||  | ||||||||| |||||||||||| || |||| ||||||| ||||||||||||||    
T  25935609 tgaaaaatagaaagtgaaagaataaatcatgtaattaaaacttgccagctgtgtcttgaaaaattcttgatgcta 25935683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 29487655 - 29487541
Alignment:
Q  85 caatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttg 184  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| || ||||  ||||||| ||| |    
T  29487655 caatcacattgcactatttgccacaattaaatgaggtgtggctgaaaaatagggagtgaacaaataaatcatgcaatcaacacttaccaactgtgtctgg 29487556  T
Q  185 aagaattcttgatgc 199  Q
    || ||||||||||||    
T  29487555 aaaaattcttgatgc 29487541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 12607226 - 12607123
Alignment:
Q  56 agaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatca 155  Q
    |||||||||||||||||||||||||    |||||||| ||||||||||||||||||| ||||||||||| |||||||||||  ||||||||| |||||||    
T  12607226 agaattcttcaagaataaagagcagt---caatcacagtgcactatttgccacaatttaaggaggtgtgactgaaaaatagaaagtgaacaaataaatca 12607130  T
Q  156 tgcaatt 162  Q
    |||||||    
T  12607129 tgcaatt 12607123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 28898482 - 28898429
Alignment:
Q  125 gctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgt 178  Q
    |||| |||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  28898482 gctgtaaaatagggagtgaacaaataaatcatgcaattaaaactttttaactgt 28898429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 17366853 - 17366929
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgc 105  Q
    ||||| |||||||||||||||| | |||  |||||| |||||||||||||   | |||| ||||||| ||||||||||||    
T  17366853 caatgctatatctctagaaaaacaacattaagaatttttcaagaataaag---aacagctaatcacactgcactatttgc 17366929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 29637008 - 29637081
Alignment:
Q  79 agcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaa 152  Q
    ||||| |||||||||   ||||||||||||||| |||||||||   ||||||||||||  ||||||||| ||||    
T  29637008 agcagtcaatcacaactaactatttgccacaatacaaggaggtaaagctgaaaaatagaaagtgaacaaataaa 29637081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 28898552 - 28898504
Alignment:
Q  32 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcag 80  Q
    ||||| |||||||||| | ||||  ||||||||||||||||||||||||    
T  28898552 tatatatctagaaaaagagcatcacgaattcttcaagaataaagagcag 28898504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 41322532 - 41322704
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| ||||||| || ||||||| |||| |||||||||||||||||||||||||    ||||||||||||||||||||  | |||||||||||||||||    
T  41322532 caatgctatatctttaaaaaaataacatcaagaattcttcaagaataaagagcagt---caatcacaatgcactatttgtgaaaattcaaggaggtgtgg 41322628  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
      |||||||||| ||| ||||||||||||||||||||||||||||  |||| | ||||||| ||||||||||||||    
T  41322629 tagaaaaataggaagttaacaattaaatcatgcaattaaaacttgctaactatgtcttgaaaaattcttgatgcta 41322704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 15562047 - 15561938
Alignment:
Q  92 aatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaatt 191  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||| ||||    
T  15562047 aatgcattatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaataaatcatacaattaaaacttgccaactgtatcttgaaaaatt 15561948  T
Q  192 cttgatgcta 201  Q
    ||||||||||    
T  15561947 cttgatgcta 15561938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 29314008 - 29314170
Alignment:
Q  32 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 131  Q
    |||||||||||||||||| |||| |||||| || |||||||||||| ||    |||||||||||||||||||||||||||| ||||||||||| ||||||    
T  29314008 tatatctctagaaaaataacatcaagaattgtttaagaataaagagaagt---caatcacaatgcactatttgccacaatttaaggaggtgtgactgaaa 29314104  T
Q  132 aatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgat 197  Q
    |||||  |||| |||| ||||| |||||||||||||||  ||||||| ||||||| ||||||||||    
T  29314105 aatagaaagtggacaaataaataatgcaattaaaacttaccaactgtgtcttgaaaaattcttgat 29314170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 36473226 - 36473076
Alignment:
Q  45 aaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaa 144  Q
    ||||| |||| |||||||||||||||||||||||||    |||||||| | ||||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  36473226 aaataacatcaagaattcttcaagaataaagagcagt---caatcacagtacactatttgacacaatttaaggaggtgtggctgaaaaataggaagtgaa 36473130  T
Q  145 caattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatg 198  Q
    ||| |||||||||||||||||||||  ||| ||| ||||||| |||||||||||    
T  36473129 caaataaatcatgcaattaaaacttaccaattgtgtcttgaaaaattcttgatg 36473076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 39112658 - 39112808
Alignment:
Q  33 atatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaa 132  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||||| |   ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  39112658 atatctctagaaaaataacatcaagaattcttcaaaaataaagagcaac---caatcacaatgcactatttgccataattcaaggaggtgcggctgaaaa 39112754  T
Q  133 atagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaa 186  Q
    ||||  ||||||||| |||||||| ||||||||| ||| ||| ||| |||||||    
T  39112755 atagaaagtgaacaaataaatcatccaattaaaatttgccaattgtgtcttgaa 39112808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 4851736 - 4851885
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||||||||||||||| |||| |||||| || |||||||||||||||    |||||| |||||||||||| |||||||| ||||| ||||||    
T  4851736 caatgctatatctctagaaaaataacatcaagaattttttaagaataaagagcagt---caatcataatgcactattttccacaatttaaggaagtgtgg 4851832  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgt 178  Q
    |||||||||||| | | ||||| ||||||||||||||||||||||||| ||||    
T  4851833 ctgaaaaataggaaataaacaaataaatcatgcaattaaaacttgtcagctgt 4851885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 11653894 - 11653738
Alignment:
Q  42 gaaaaatatcatcgagaattcttcaagaataaagagcag-cagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggag 140  Q
    |||||||| |||| ||||||||||||||||||||||||| ||  |||||| |||| |||||||||||||||||||||| |||||||| ||||| ||  ||    
T  11653894 gaaaaataacatcaagaattcttcaagaataaagagcagtcaatcaatcataatgtactatttgccacaattcaaggatgtgtggcttaaaaa-agtaag 11653796  T
Q  141 tgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatg 198  Q
    ||||||| ||||||||| ||||||||||||||| | || |||| || |||||||||||    
T  11653795 tgaacaaataaatcatgtaattaaaacttgtcagccgtgtcttaaaaaattcttgatg 11653738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 34392112 - 34392251
Alignment:
Q  27 aatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggc 126  Q
    |||| |||||||||| ||||||| |||| |||||| |||||||||||||||||     ||||||||||| |||||||||||||||| ||| |||||||||    
T  34392112 aatgctatatctctaaaaaaataacatcaagaatttttcaagaataaagagcact---caatcacaatgtactatttgccacaatttaagaaggtgtggc 34392208  T
Q  127 tgaaaaatagggagtgaacaattaaatcatgcaattaaaactt 169  Q
    ||||||||    ||||||||| |||||||||||||||||||||    
T  34392209 tgaaaaatgaaaagtgaacaaataaatcatgcaattaaaactt 34392251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 2001681 - 2001807
Alignment:
Q  56 agaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatca 155  Q
    |||||||||||||||||||||||||    |||||| ||| ||| ||||||||||||| ||||||||||||||| |||||||  ||||||||| |||||||    
T  2001681 agaattcttcaagaataaagagcagt---caatca-aatacacgatttgccacaatttaaggaggtgtggctggaaaatagatagtgaacaaataaatca 2001776  T
Q  156 tgcaattaaaacttgtcaactgtatcttgaa 186  Q
    || |||||||||||| || |||| |||||||    
T  2001777 tgtaattaaaacttggcagctgtgtcttgaa 2001807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 1005596 - 1005736
Alignment:
Q  30 gttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctga 129  Q
    ||||||||||||||||||||  ||  | ||||||| |||||||||||| |     |||| | ||||||| ||||| ||||||| || |||||||| ||||    
T  1005596 gttatatctctagaaaaataatattaaaaattcttaaagaataaagagtaat---caattataatgcaccatttgacacaatttaaagaggtgtgactga 1005692  T
Q  130 aaaatagggagtgaacaattaaatcatgcaattaaaacttgtca 173  Q
    |||||||| ||||||||| ||||| |||||||||||||||||||    
T  1005693 aaaataggaagtgaacaaataaattatgcaattaaaacttgtca 1005736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 33888946 - 33889023
Alignment:
Q  124 ggctgaaaaatagggagtgaacaattaaatcatgcaattaaaacttgtcaactgtatcttgaagaattcttgatgcta 201  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||  ||| ||||||| ||||||||||||||    
T  33888946 ggctgaaaaatagggagtgaacaaataaattatgcaattaaaacttgtcagttgtttcttgaaaaattcttgatgcta 33889023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 8551492 - 8551625
Alignment:
Q  26 caatgttatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 125  Q
    ||||| |||||||||| ||||||| |||  |||||||||| |||||||||| || |   ||||||||||||| | |||||||||||| |||||| |||||    
T  8551492 caatgctatatctctaaaaaaataacattaagaattcttcgagaataaagaacaac---caatcacaatgcattgtttgccacaattaaaggagatgtgg 8551588  T
Q  126 ctgaaaaatagggagtgaacaattaaatcatgcaatt 162  Q
     | ||||||||  | ||||||| ||||||||||||||    
T  8551589 ttaaaaaatagaaaatgaacaaataaatcatgcaatt 8551625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 11643324 - 11643423
Alignment:
Q  64 tcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaatta 163  Q
    |||||||||||||||||    ||||||||||||||||||| |||||||| ||| | |||| | ||||||||| | ||||||||| |||||||| ||||||    
T  11643324 tcaagaataaagagcagt---caatcacaatgcactatttaccacaatttaagaaagtgtagttgaaaaatacgaagtgaacaaataaatcatacaatta 11643420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 4794174 - 4794243
Alignment:
Q  79 agcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaat 148  Q
    |||||||||||||||||||||||||||||||||  | |||||| ||||  ||||||||| ||||||||||    
T  4794174 agcagccaatcacaatgcactatttgccacaatatatggaggtttggccaaaaaataggaagtgaacaat 4794243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 60 - 178
Target Start/End: Original strand, 5548972 - 5549087
Alignment:
Q  60 ttcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgca 159  Q
    |||||||||||||||||||||    |||||| ||| || || |||||| ||| || || |||||  ||||| |||||||||||||||| |||||||||||    
T  5548972 ttcttcaagaataaagagcagt---caatcataattcagtacttgccataatacacggtggtgtccctgaacaatagggagtgaacaaataaatcatgca 5549068  T
Q  160 attaaaacttgtcaactgt 178  Q
    |||| | |||| |||||||    
T  5549069 attataccttgacaactgt 5549087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 37919679 - 37919603
Alignment:
Q  85 caatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagggagtgaacaattaaatcatgcaat 161  Q
    ||||||||||||| |||||| ||||||| |||||| ||||  ||||||||||  ||||||||| |||||||||||||    
T  37919679 caatcacaatgcattatttgtcacaatttaaggagatgtgagtgaaaaatagtaagtgaacaaataaatcatgcaat 37919603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 545 - 642
Alignment:
Q  32 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 131  Q
    ||||||| || ||||||| |||| ||||||||||||||||||||   ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||    
T  545 tatatctataaaaaaataacatcaagaattcttcaagaataaag---agcagtcaatcacaatgcactatttg-cacaatttaaggaggtgtggctgaaa 640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 8505 - 8602
Alignment:
Q  32 tatatctctagaaaaatatcatcgagaattcttcaagaataaagagcagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 131  Q
    ||||||| || ||||||| |||| ||||||||||||||||||||   ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||    
T  8505 tatatctataaaaaaataacatcaagaattcttcaagaataaag---agcagtcaatcacaatgcactatttg-cacaatttaaggaggtgtggctgaaa 8600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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