View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0589_low_50 (Length: 275)

Name: NF0589_low_50
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0589_low_50
NF0589_low_50
[»] chr6 (3 HSPs)
chr6 (33-239)||(31262812-31263018)
chr6 (142-226)||(19845504-19845589)
chr6 (142-222)||(15342386-15342467)
[»] scaffold0186 (1 HSPs)
scaffold0186 (142-222)||(27627-27708)
[»] chr8 (4 HSPs)
chr8 (142-222)||(24921069-24921150)
chr8 (142-222)||(1083397-1083478)
chr8 (142-222)||(31390889-31390970)
chr8 (142-222)||(40502704-40502785)
[»] chr3 (3 HSPs)
chr3 (142-222)||(13819041-13819122)
chr3 (142-222)||(4267597-4267678)
chr3 (142-189)||(12211238-12211285)
[»] chr1 (4 HSPs)
chr1 (142-222)||(29496742-29496823)
chr1 (142-222)||(24707721-24707802)
chr1 (142-222)||(19148840-19148921)
chr1 (142-222)||(23675894-23675975)
[»] chr7 (1 HSPs)
chr7 (142-222)||(41549133-41549214)
[»] chr4 (1 HSPs)
chr4 (142-222)||(55042433-55042514)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 31262812 - 31263018
Alignment:
Q  33 gttttgacatgaagtggggttctgcgtttgccgtggatgaatggtgatacgagaaagaagatttaaattaatgaagtggcttgataaaattgtaatgtaa 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31262812 gttttgacatgaagtggggttctgcgtttgccgtggatgaatggtgatacgagaaagaagatttaaattaatgaagtggcttgataaaattgtaatgtaa 31262911  T
Q  133 aannnnnnnatgctatttttaatttagtagaaccatgttgcacctataatattaatgaaacataatatgttgctagttactaactttgttcaacaatcgt 232  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31262912 aaaatttttatgctatttttaatttagtagaaccatgttgcacctataatattaatgaaacataatatgttgctagttactaactttgttgaacaatcgt 31263011  T
Q  233 atagtat 239  Q
    |||||||    
T  31263012 atagtat 31263018  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 19845504 - 19845589
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgttcaac 226  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||  |||||||| ||||||||||| |||||||||    
T  19845504 atgctattttttatttaataggaccatgttgcacctataatattaatggaaacaccatatgttgttagttactaacattgttcaac 19845589  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 15342467 - 15342386
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    ||||||||||| | ||||||| ||||||| ||| || |||||||||| ||||||  |||||||| ||||||||||| |||||    
T  15342467 atgctattttttaattagtaggaccatgtcgcatctgtaatattaatggaaacaccatatgttgttagttactaacattgtt 15342386  T

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Target: scaffold0186 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 27627 - 27708
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||  |||||||| ||||||||||| |||||    
T  27627 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccatatgttgttagttactaacattgtt 27708  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 24921150 - 24921069
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||  |||||||| ||||||||||| |||||    
T  24921150 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccatatgttgttagttactaacattgtt 24921069  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 1083478 - 1083397
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||  |||||||| |||||| |||| |||||    
T  1083478 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccatatgttgttagttattaacattgtt 1083397  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 31390889 - 31390970
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||  |||||||| |||||| |||| |||||    
T  31390889 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccatatgttgttagttattaacattgtt 31390970  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 40502785 - 40502704
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    ||||||||||| | ||||||| ||||||||||| || |||||||||| ||||||  |||||||| ||||||||||| |||||    
T  40502785 atgctattttttaattagtaggaccatgttgcatctgtaatattaatggaaacaccatatgttgttagttactaacattgtt 40502704  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 13819122 - 13819041
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||  |||||||| ||||||||||| |||||    
T  13819122 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccatatgttgttagttactaacattgtt 13819041  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 4267597 - 4267678
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||   ||||||| |||||| |||| |||||    
T  4267597 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccgtatgttgttagttattaacattgtt 4267678  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 12211238 - 12211285
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaatg 189  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||||    
T  12211238 atgctattttttatttagtaggacaatgtcgcacctataatattaatg 12211285  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 29496742 - 29496823
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    |||||| |||| ||||||||| ||||||||||||||||||||||| | ||||||  |||||||| ||||||||||| |||||    
T  29496742 atgctactttttatttagtaggaccatgttgcacctataatattattggaaacaccatatgttgttagttactaacattgtt 29496823  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 24707721 - 24707802
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    ||||||||||| | ||||||| | ||||| ||||||||||||||||| ||||||  |||||||| ||||||||||| |||||    
T  24707721 atgctattttttaattagtaggatcatgtcgcacctataatattaatggaaacaccatatgttgttagttactaacattgtt 24707802  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 19148921 - 19148840
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||   ||||||| |||||| |||| |||||    
T  19148921 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccgtatgttgttagttattaacattgtt 19148840  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 23675975 - 23675894
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||   ||||||| |||||| |||| |||||    
T  23675975 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccgtatgttgttagttattaacattgtt 23675894  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 41549133 - 41549214
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||   ||||||| |||||| |||| |||||    
T  41549133 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccgtatgttgttagttattaacattgtt 41549214  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 55042433 - 55042514
Alignment:
Q  142 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 222  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||   ||||||| |||||| |||| |||||    
T  55042433 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccgtatgttgttagttattaacattgtt 55042514  T

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