View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0589_low_52 (Length: 270)

Name: NF0589_low_52
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0589_low_52
NF0589_low_52
[»] chr8 (3 HSPs)
chr8 (13-242)||(44684893-44685124)
chr8 (21-91)||(13172244-13172317)
chr8 (120-179)||(13172349-13172403)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 44684893 - 44685124
Alignment:
Q  13 aatatatgaagatgtgttgaaatattttactcatatcatacaaatattaatttgtgcagttctttagtattgatttatatgatcataagagtataannnn 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  44684893 aatatatgaagatgtgttgaaatattttactcatatcatacaaatattaatttgtgcagttctttagtattgatttatatgatcataagagtataatttt 44684992  T
Q  113 nnnnn-ctttctctgagttaatgat-gacaaatgtaataagaacctataggaatctcactatttttaagctgtaatgctcctgtacaatgcagcactcat 210  Q
          ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  44684993 ttttttctttctctgagttaatgatagacaaatgtaataagaacctataggaatctcactatttttaagctgtaatgcccctgtacaatgtagcactcat 44685092  T
Q  211 ctcagagttatcttctcagggacaaacatatt 242  Q
    ||||||||||||||||||||||||||||||||    
T  44685093 ctcagagttatcttctcagggacaaacatatt 44685124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 13172244 - 13172317
Alignment:
Q  21 aagatgtgttgaaatattttactcatatc---atacaaatattaatttgtgcagttctttagtattgatttata 91  Q
    ||||||||| || |||||||||| |||||   |||||| ||||||||||||||||| |||||||||||||||||    
T  13172244 aagatgtgtcgagatattttacttatatcttcatacaagtattaatttgtgcagttatttagtattgatttata 13172317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 13172349 - 13172403
Alignment:
Q  120 ttctctgagttaatgatgacaaatgtaataagaacctataggaatctcactatttttaag 179  Q
    |||| ||||||||||||||||| ||||||||||||||     ||||||||||||||||||    
T  13172349 ttctttgagttaatgatgacaagtgtaataagaacct-----aatctcactatttttaag 13172403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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