View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_54 (Length: 268)
Name: NF0589_low_54
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 31026920 - 31027037
Alignment:
| Q |
88 |
tgactaactgtaatattcttatggtttgaacttgaaagttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaacaagtactag |
187 |
Q |
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| T |
31026920 |
tgactaactgtaatattcttatggtttgaacttgaaagttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaacaagtactag |
31027019 |
T |
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| Q |
188 |
tattatgagatatattta |
205 |
Q |
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| T |
31027020 |
tattatgagatacattta |
31027037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 31029787 - 31029891
Alignment:
| Q |
102 |
attcttatggtttgaacttgaaagttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaacaagtactagtattatgagatata |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31029787 |
attcttatggtttgaacttgaaagttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaacaagtactagtattatgagataca |
31029886 |
T |
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| Q |
202 |
tttat |
206 |
Q |
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||||| |
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| T |
31029887 |
tttat |
31029891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 31036757 - 31036865
Alignment:
| Q |
102 |
attcttatggtttgaacttgaaagttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaacaagtactagtattatgagatata |
201 |
Q |
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| T |
31036757 |
attcttatggtttgaacttgaaagttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaaca------agtattatgagatata |
31036850 |
T |
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| Q |
202 |
tttatttgttgatat |
216 |
Q |
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| T |
31036851 |
tttatttgttgatat |
31036865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 31041927 - 31042020
Alignment:
| Q |
88 |
tgactaactgtaatattcttatggtttgaacttgaaa--gttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaacaa |
180 |
Q |
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||||||| |||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
31041927 |
tgactaattgtaat-ttcttatggtttgaacttgaaaaagttgacgattgaacgaatcaaacttcttgtgccccaaattatacacacgaaaacaa |
31042020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 31032137 - 31032204
Alignment:
| Q |
201 |
atttatttgttgatatatgtattatgtatacccatannnnnnncccccgttggctatcaaaatacaga |
268 |
Q |
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| T |
31032137 |
atttatttgttgatatatgtattatgtatacccatatttttttcccccgttggctatcaaaatacaga |
31032204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 31022879 - 31022948
Alignment:
| Q |
102 |
attcttatggtttgaacttgaaagttgacaattgaacgaatcaaac-ttcttgtgcaccaaactatacac |
170 |
Q |
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|||| ||||| ||||||||||| ||||| | | ||||||||||||| |||||||||||||||||| |||| |
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| T |
31022879 |
attcgtatgggttgaacttgaaggttgaaagtagaacgaatcaaactttcttgtgcaccaaactaaacac |
31022948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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