View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_56 (Length: 266)
Name: NF0589_low_56
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_56 |
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| [»] scaffold0891 (1 HSPs) |
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| [»] scaffold1268 (1 HSPs) |
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| [»] scaffold1267 (1 HSPs) |
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| [»] scaffold2116 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 35775386 - 35775136
Alignment:
| Q |
1 |
ggttctaggcttgttggatgtagaaaatgttttaaagattgactaattcaaacaagatgacatccgttcaagtttatattgtgaaactttattcccttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35775386 |
ggttctaggcttgttggatgtagaaaatgttttaaagattgactaattcaaacaagatgacatccgttcaagtttatattgtgaaactttattcccttta |
35775287 |
T |
|
| Q |
101 |
acttactttaatcaaatttttaggtgaaacttttattgatgatggcaccttggataaaagtctagattggatctcaggaatgaaagatatcagactaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35775286 |
acttactttaatcaaatttttaggtgaaacttttattgatgatggcaccttggatacaagtctagattggatctcaggaatgaaagatatcagactaaaa |
35775187 |
T |
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| Q |
201 |
gatcttccaagcttcatgagaatcaccgatctaagtgatattttgtttgat |
251 |
Q |
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| T |
35775186 |
gatcttccaagcttcatgagaatcaccgatctaagtgatattttgtttgat |
35775136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 35849052 - 35848917
Alignment:
| Q |
116 |
atttttaggtgaaacttttattgatgatggcaccttggataaaagtctagattggatctcaggaatgaaagatatcagactaaaagatcttccaagcttc |
215 |
Q |
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|||||||| ||||| |||||||| |||||||||||||||| |||| ||||||||||||| ||||| ||||| |||||| | ||||| |||||||||||| |
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| T |
35849052 |
atttttagatgaaaattttattgccgatggcaccttggatacaagtttagattggatctctggaataaaagacatcagattgaaagaccttccaagcttc |
35848953 |
T |
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| Q |
216 |
atgagaatcaccgatctaagtgatattttgtttgat |
251 |
Q |
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|||||| |||||||||||| ||||||| |||||||| |
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| T |
35848952 |
atgagagtcaccgatctaaatgatattatgtttgat |
35848917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 251
Target Start/End: Complemental strand, 35755165 - 35755013
Alignment:
| Q |
99 |
taacttactttaatcaaatttttaggtgaaacttttattgatgatggcaccttggataaaagtctagattggatctcaggaatgaaagatatcagactaa |
198 |
Q |
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||||||| ||| |||||||||||| |||| |||| || |||||||||||||| | |||| |||||||||||||||||||||||||||||| | ||| |
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| T |
35755165 |
taacttaattttgtcaaatttttagatgaacattttgtttgcgatggcaccttggaaacaagtatagattggatctcaggaatgaaagatatcaaattaa |
35755066 |
T |
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| Q |
199 |
aagatcttccaagcttcatgagaatcaccgatctaagtgatattttgtttgat |
251 |
Q |
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|||| |||||||||||||||||| |||| ||||||| ||||||| |||||||| |
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| T |
35755065 |
aagaccttccaagcttcatgagagtcactgatctaaatgatattatgtttgat |
35755013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 251
Target Start/End: Complemental strand, 35866740 - 35866588
Alignment:
| Q |
99 |
taacttactttaatcaaatttttaggtgaaacttttattgatgatggcaccttggataaaagtctagattggatctcaggaatgaaagatatcagactaa |
198 |
Q |
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||||||||||| ||||||| | || ||||| |||||||| |||||||||||||||| |||| ||||||||||||| ||||| ||||| |||||| | | |
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| T |
35866740 |
taacttacttttgtcaaattatcagatgaaaattttattgccgatggcaccttggatacaagtttagattggatctctggaataaaagacatcagattga |
35866641 |
T |
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| Q |
199 |
aagatcttccaagcttcatgagaatcaccgatctaagtgatattttgtttgat |
251 |
Q |
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|||| |||||||||||||||||| |||| ||||||| ||||||| |||||||| |
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| T |
35866640 |
aagaccttccaagcttcatgagagtcactgatctaaatgatattatgtttgat |
35866588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 82 - 248
Target Start/End: Original strand, 2786 - 2952
Alignment:
| Q |
82 |
tgaaactttattccctttaacttactttaatcaaatttttaggtgaaacttttattgatgatggcaccttggataaaagtctagattggatctcaggaat |
181 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| |||||||||| |||||||| |
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| T |
2786 |
tgaaactttattcccttgaacttactttaatcaaatttttagatgaaacttttatcgatgatggcaccttggatacaagtttagattggatatcaggaat |
2885 |
T |
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| Q |
182 |
gaaagatatcagactaaaagatcttccaagcttcatgagaatcaccgatctaagtgatattttgttt |
248 |
Q |
| |
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||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||| ||||||||| |
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| T |
2886 |
gaaagatatcagaataaaagatcttccaagcttcgtcagagtcaccgatctaagtgacattttgttt |
2952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1268 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 1938 - 2063
Alignment:
| Q |
114 |
aaatttttaggtgaaacttttattgatgatggcaccttggataaaagtctagattggatctcaggaatgaaagatatcagactaaaagatcttccaagct |
213 |
Q |
| |
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||||| |||| ||||| |||||||| |||||||||||||| | |||| ||||||||||||| |||||||||||||| || |||||||| |||||||||| |
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| T |
1938 |
aaattattagatgaaaattttattgccgatggcaccttggaaacaagtttagattggatctcgggaatgaaagatattagcctaaaagaccttccaagct |
2037 |
T |
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| Q |
214 |
tcatgagaatcaccgatctaagtgat |
239 |
Q |
| |
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|||| |||||||| ||||||| |||| |
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| T |
2038 |
tcataagaatcacagatctaaatgat |
2063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1267 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 1938 - 2063
Alignment:
| Q |
114 |
aaatttttaggtgaaacttttattgatgatggcaccttggataaaagtctagattggatctcaggaatgaaagatatcagactaaaagatcttccaagct |
213 |
Q |
| |
|
||||| |||| ||||| |||||||| |||||||||||||| | |||| ||||||||||||| |||||||||||||| || |||||||| |||||||||| |
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| T |
1938 |
aaattattagatgaaaattttattgccgatggcaccttggaaacaagtttagattggatctcgggaatgaaagatattagcctaaaagaccttccaagct |
2037 |
T |
|
| Q |
214 |
tcatgagaatcaccgatctaagtgat |
239 |
Q |
| |
|
|||| |||||||| ||||||| |||| |
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| T |
2038 |
tcataagaatcacagatctaaatgat |
2063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2116 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold2116
Description:
Target: scaffold2116; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 799 - 897
Alignment:
| Q |
141 |
gatggcaccttggataaaagtctagattggatctcaggaatgaaagatatcagactaaaagatcttccaagcttcatgagaatcaccgatctaagtgat |
239 |
Q |
| |
|
|||||||||||||| | | || ||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |||| |
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| T |
799 |
gatggcaccttggaaacacgtttagattggacctccggaatgaaagatattagactaaaagatcttccaagcttcataagaatcacagatctaaatgat |
897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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