View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_59 (Length: 251)
Name: NF0589_low_59
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_59 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 1088151 - 1088391
Alignment:
| Q |
11 |
acaatatctatatattcgaatggatgcttccacagtaggtaaatgctatgttcttctcacacatttatgcattttttatggattatatatgtctagtctt |
110 |
Q |
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| T |
1088151 |
acaatatctatatattcgaatggatgcttccacagtaggtaaatgctatgttcttctcacacatttatgcattttttatggattatatatgtctagtctt |
1088250 |
T |
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| Q |
111 |
taactatatggttttagtaaatgcttaatttgtttacctaagttttgtctcttgtcaatttaacttgcacaaaattgttcctaaaacattctgaaccatc |
210 |
Q |
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| T |
1088251 |
taactatatggttttagtaaatgattaatttgtttacctaagttttgtctcttgtcaatttaacttgcacaaaattgatcctaaaacattctgaaccatc |
1088350 |
T |
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| Q |
211 |
tttcaatagttcattctaggcatttatgaagcattctatca |
251 |
Q |
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| T |
1088351 |
tgtcaatagtttattctaggcttttatgaagcattctatca |
1088391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 1072487 - 1072634
Alignment:
| Q |
11 |
acaatatctatatattcgaatggatgcttccacagtaggtaaatgctatgttcttctcacacatttatgcattttttatggat--tatatatgtctagtc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||||| | || || |
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| T |
1072487 |
acaatatctatatattcgaatggatgcttccacagtaggtaaatgctatattcttctcaaacatttatgctttttttatggattatatatatttttaatc |
1072586 |
T |
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| Q |
109 |
tttaactatatggttttagtaaatgcttaatttgtttacctaagtttt |
156 |
Q |
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| T |
1072587 |
tctagctatatagttttagttaatactaaatttgtttgcctaagtttt |
1072634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 1047677 - 1047765
Alignment:
| Q |
11 |
acaatatctatatattcgaatggatgcttccacagtaggtaaatgctatgttcttctcacacatttatgcattttttatggattatata |
99 |
Q |
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| T |
1047677 |
acaatatctatatattcgaatggatgcttccacagtaggtaaatgctatgttcttctcaaacatttattctttttgtatggattatata |
1047765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 1104704 - 1104748
Alignment:
| Q |
11 |
acaatatctatatattcgaatggatgcttccacagtaggtaaatg |
55 |
Q |
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| T |
1104704 |
acaagatctttatgttcgaatggatgcttccacagtaggtaaatg |
1104748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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