View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0589_low_6 (Length: 569)
Name: NF0589_low_6
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_6 |
 | |
|
| [»] scaffold0295 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 29 - 531
Target Start/End: Original strand, 24564840 - 24565336
Alignment:
| Q |
29 |
acatgaaagttttctcgtcgatacgttagcatagcacgtccaccaccatctcccagtaagaaacttggccccccactgcaccgactactgtgtgacttcg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24564840 |
acatgaaagttttctcgtcgatacgttagcatagcacgtccaccaccatctcccagtaagaaacttggccccccactgcaccgactactgtgtgacttcg |
24564939 |
T |
|
| Q |
129 |
tcactgccacagacaccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggccttgatgccctagtcctttcctatttcttcatct |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24564940 |
tcactgccacagacaccgaaatgtctccatttctctatcgaaaaactgattgatgaaaaatgtggccttgatgccctagtcctttcctatttcttcatct |
24565039 |
T |
|
| Q |
229 |
tttctctatctctacaataccaaacgtaataaaggtcactaggtaaggatgaaatttgaatgacaaaaattcacatcaaaggtccgcatcctttgtataa |
328 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24565040 |
tttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaatttgaatgacaaaaattcacatcaaaggtccgcatcctttgtataa |
24565139 |
T |
|
| Q |
329 |
agatatacatattaagatgactaaatatgaaaaactaattctctcaaaaacataaattataaacaattctgaaaaacatacttgaagggaaccagaaatg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24565140 |
agatatacatattaagatgactaaatatgaaaaactaattctctcaaaaacataaattataaacaattctgaaaaacatacttgaagggaaccagaaatg |
24565239 |
T |
|
| Q |
429 |
tccatcataaattagaaaatatataacgataattgtcaaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattat |
528 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24565240 |
tccatcataaattagaaaatat------ataattgtcaaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattat |
24565333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 184 - 278
Target Start/End: Original strand, 14164926 - 14165020
Alignment:
| Q |
184 |
aaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaacgtaataaaggtcactaggtaaggat |
278 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||||||| ||||||||| ||||| ||| ||||| ||||||| | ||||| | ||||||| |
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|
| T |
14164926 |
aaaaatgtggccttgatgctcaactcctttcctatttcttcaccttttctctgtctcttcaaaaccaagtgtaataatgatcacttgctaaggat |
14165020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 29 - 448
Target Start/End: Complemental strand, 45533214 - 45532792
Alignment:
| Q |
29 |
acatgaaagttttctcgtcgatacgttagcatagcacgtccaccaccatctcccagtaagaaacttggccccccactgcaccgactactgtgtgacttcg |
128 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| |||| |||||| ||||| |||||||||||||| || |||||||||||| ||||||||| |
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|
| T |
45533214 |
acatcaaagttttctcgtctatacgttagcatagcataatcaccgccatcttccagttagaaacttggcccct-accgcaccgactactttgtgacttct |
45533116 |
T |
|
| Q |
129 |
tcactgccacagacaccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggccttgatgccctagtcctttcctatttcttcatct |
228 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||| | |||||||||||||||| |||| |
|
|
| T |
45533115 |
tcactaccaccgacaccgaaatgtcaccatttctccatcgaaaaa---------------tgtggccttgatgccccactcctttcctatttcttgatct |
45533031 |
T |
|
| Q |
229 |
tttctctatctctacaataccaaacgtaataaaggtcactaggtaaggatgaaatttgaatgacaaaaattcacatcaaaggtccgcatcctttgta--- |
325 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| ||| | |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |
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|
| T |
45533030 |
tttctctatctctacaaaaccaaatgtaataaagatcatttggtaaggatgaaatttgaatgacaaaaattcagatcaaaggttcacatcctttgtaatt |
45532931 |
T |
|
| Q |
326 |
------------taaagat----atacatattaagatgactaaatatgaaaaactaattctctcaaaaacataaattataaacaattctgaaaaacatac |
409 |
Q |
| |
|
|| |||| ||| | |||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |||||||||||| |
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|
| T |
45532930 |
tttcttataatgtatagataaagatatagattaagatgactaaatatgaaaaactaattctctcaaaaacatacaatataaacgattatgaaaaacatac |
45532831 |
T |
|
| Q |
410 |
ttgaagggaaccagaaatgtccatcataaattagaaaat |
448 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
45532830 |
ttgacgggaaccagaaatctccatcataaattagaaaat |
45532792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 36 - 554
Target Start/End: Original strand, 44338975 - 44339478
Alignment:
| Q |
36 |
agttttctcgtcgatacgttagcatagcacgtccaccaccatctcccagtaagaaacttggccccccactgcaccgactactgtgtgacttcgtcactgc |
135 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| |||||||| || | ||||||| ||||| |||||| |||||||| ||||||||| ||| || |
|
|
| T |
44338975 |
agttttctcatctctacgttagcatagcacgtccaccgccatctcctggttaaaaacttgtccccc-actgcatcgactactttgtgacttcttcaaagc |
44339073 |
T |
|
| Q |
136 |
cacagacaccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctct |
235 |
Q |
| |
|
||| ||||||||||| | ||||||||| | ||| | | |||||||||||||||||||||| | | |||||||||||||||||||||||||||| |
|
|
| T |
44339074 |
cac------cgaaatgtctcgacttctctatcaataaagttgctgatgaaaaatgtggccttgattctcccctcctttcctatttcttcatcttttctct |
44339167 |
T |
|
| Q |
236 |
atctctacaataccaaacgtaataaaggtcactaggtaaggatgaaatttgaatgacaaaaattcacatcaaaggtccgcatccttt-------gtataa |
328 |
Q |
| |
|
||||||||| ||||| |||| | || ||||| ||||||||||||||| |||||| |||||| | ||||||||||| |||||||| || || |
|
|
| T |
44339168 |
gtctctacaaaaccaagtgtaaaacagatcacttggtaaggatgaaattggaatgataaaaatcgaaatcaaaggtccacatccttttgttatagtgtat |
44339267 |
T |
|
| Q |
329 |
agat----atacatattaagatgactaaatatgaaaaactaattctctcaaaaacataaattataaacaattctgaaaaacatacttgaagggaaccaga |
424 |
Q |
| |
|
|||| ||| | ||||| || ||| ||||||||||||||||||||||||||||||||| || ||||||||| | | ||||||||| | | |
|
|
| T |
44339268 |
agataaagatatagattaaaattacttaatatgaaaaactaattctctcaaaaacataaacta----------tgaaaaacacattggaagggaacgata |
44339357 |
T |
|
| Q |
425 |
aatgtccatcataaattagaaaatatataacgataattgtcaaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaa |
524 |
Q |
| |
|
||| |||||| ||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||| ||| |||| || |||||| |
|
|
| T |
44339358 |
aatatccatcgtaaattagaaaatat------ataattgtcaaatctaaaaaaagaaatatcatgaagaataaaaactgctaa---ttttatactttgaa |
44339448 |
T |
|
| Q |
525 |
ttataagtggtcatattataacccaatgat |
554 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |
|
|
| T |
44339449 |
ttataattggtcatattataactcaatgat |
44339478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 36 - 551
Target Start/End: Complemental strand, 44335999 - 44335499
Alignment:
| Q |
36 |
agttttctcgtcgatacgttagcatagcacgtccaccaccatctcccagtaagaaacttggccccccactgcaccgactactgtgtgacttcgtcactgc |
135 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| ||||||| || | ||||||| ||||| | |||||||||||| ||||||||| ||| |
|
|
| T |
44335999 |
agttttctcatctctacgttagcatagcacgtccaccatcatctcctggttaaaaacttgtcccccatc-gcaccgactactttgtgacttcttcaa--- |
44335904 |
T |
|
| Q |
136 |
cacagacaccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctct |
235 |
Q |
| |
|
|| ||||||||||||| | ||||||||| | ||| | | |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
44335903 |
---agttaccgaaatgtctcgacttctctatcaataaagttgctgatgaaaaatgtggccttgatgctcccctcctttcctatttcttcatcttttctcc |
44335807 |
T |
|
| Q |
236 |
atctctacaataccaaacgtaataaaggtcactaggtaaggatgaaatttgaatgacaaaaattcacatcaaaggtccgcatcctt-------------t |
322 |
Q |
| |
|
||||||||| ||||| |||| | || ||||| ||||||||||||||| |||||| |||||| | ||||||||||| ||||||| | |
|
|
| T |
44335806 |
gtctctacaaaaccaagtgtaaaacagatcacttggtaaggatgaaattggaatgataaaaatcaaaatcaaaggtccacatccttttgttatagtgtat |
44335707 |
T |
|
| Q |
323 |
gtataaagatatacatattaagatgactaaatatgaaaaactaattctctcaaaaacataaattataaacaattctgaaaaacatacttgaagggaacca |
422 |
Q |
| |
|
| |||||||||| | ||||| || || ||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||| | |
|
|
| T |
44335706 |
ggataaagatat--agattaaaattccttaatatgaaaaattaattctctcaaaaacataaaata----------tgaaaaacatactcgaagggaacga |
44335619 |
T |
|
| Q |
423 |
gaaatgtccatcataaattagaaaatatataacgataattgtcaaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttg |
522 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||| ||| |||| || |||| |
|
|
| T |
44335618 |
taaatatccatcgtaaattagaaaatat------ataattgtcaaatctaaaaaaagaaatatcatgaagaataaaaactgctaa---ttttatactttg |
44335528 |
T |
|
| Q |
523 |
aattataagtggtcatattataacccaat |
551 |
Q |
| |
|
|||||||| |||| |||||||||| |||| |
|
|
| T |
44335527 |
aattataactggtaatattataactcaat |
44335499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 466 - 560
Target Start/End: Complemental strand, 45532795 - 45532704
Alignment:
| Q |
466 |
aaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattataagtggtcatattataacccaatgatcagtat |
560 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
45532795 |
aaatctttaaaatgtaatatctttaagaataaaaacttcaaatttttt---attttgaattataattggtcatattataacccaatgatgagtat |
45532704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 313
Target Start/End: Complemental strand, 29633561 - 29633314
Alignment:
| Q |
58 |
catagcacgtccaccaccatctcccagtaagaaacttggccccccactgcaccgactactgtgtgacttcgtcactgccacagacaccgaaatgtctcca |
157 |
Q |
| |
|
||||||| | ||||| |||||||| ||| | |||||| |||||| |||||||||| || ||||| ||| |||||||||| | |||| || ||| |
|
|
| T |
29633561 |
catagcaggaccaccgccatctcctagttaaaaacttagccccca--tgcaccgactgctttgtgatttcttcactgccac------caaaatatcccca |
29633470 |
T |
|
| Q |
158 |
tttctctatcgaaaaactggttgatgaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaacgtaa |
257 |
Q |
| |
|
|||| |||||| |||||||| | ||||||| |||| ||||| ||||| || ||||||||||||| || |||||| | |||| ||| ||||| |||| |
|
|
| T |
29633469 |
tttccctatcgcaaaactggcagttgaaaaacatggcattgataccctactcgtttcctatttctttatattttctttgcctcttcaagaccaagtgtaa |
29633370 |
T |
|
| Q |
258 |
taaaggtcactaggtaaggatgaaatttgaatgacaaaaattcacatcaaaggtcc |
313 |
Q |
| |
|
||| | ||||| | |||| || |||| |||||| |||||| || || |||||||| |
|
|
| T |
29633369 |
taacgatcacttgctaagaatagaattggaatgataaaaatccagattaaaggtcc |
29633314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 339 - 439
Target Start/End: Complemental strand, 19190196 - 19190095
Alignment:
| Q |
339 |
attaagatgactaaatatgaaaaactaattctctcaaaaacataaattataaacaattct-gaaaaacatacttgaagggaaccagaaatgtccatcata |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19190196 |
attaagatgactaaatatgaaaaactaattctctcaaaaacataaaatataaacaattctaaaaaaacatacttgaagggaaccagaaatgtcaatcata |
19190097 |
T |
|
| Q |
438 |
aa |
439 |
Q |
| |
|
|| |
|
|
| T |
19190096 |
aa |
19190095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 16351 - 16257
Alignment:
| Q |
184 |
aaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaacgtaataaaggtcactaggtaaggat |
278 |
Q |
| |
|
||||||||||||||||||| | | |||||| ||||||||||| ||||||||| ||||| ||| ||||| ||||||| | ||||| | ||||||| |
|
|
| T |
16351 |
aaaaatgtggccttgatgctcaactccttttctatttcttcaccttttctctgtctcttcaaaaccaagtgtaataatgatcacttgctaaggat |
16257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 23096176 - 23096252
Alignment:
| Q |
184 |
aaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaacgtaataa |
260 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||||||||| |||||||| |||||| ||| ||||| ||||||| |
|
|
| T |
23096176 |
aaaaatgtagccttgatgccccacccctttcctatttcttcaccttttctccatctcttcaaaaccaagtgtaataa |
23096252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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